{"id":"https://openalex.org/W2095718954","doi":"https://doi.org/10.1093/nar/gkm955","title":"JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update","display_name":"JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update","publication_year":2007,"publication_date":"2007-11-15","ids":{"openalex":"https://openalex.org/W2095718954","doi":"https://doi.org/10.1093/nar/gkm955","mag":"2095718954","pmid":"https://pubmed.ncbi.nlm.nih.gov/18006571"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkm955","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkm955","pdf_url":"https://academic.oup.com/nar/article-pdf/36/suppl_1/D102/7635284/gkm955.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/36/suppl_1/D102/7635284/gkm955.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5108499417","display_name":"Jan Christian Bryne","orcid":null},"institutions":[{"id":"https://openalex.org/I96673099","display_name":"Technical University of Denmark","ror":"https://ror.org/04qtj9h94","country_code":"DK","type":"education","lineage":["https://openalex.org/I96673099"]}],"countries":["DK"],"is_corresponding":true,"raw_author_name":"J. C. Bryne","raw_affiliation_strings":["Computational Biology Unit, Bergen Center for Computational Science, University of Bergen, Thorm\u00f8hlensgate 55, N-5008 Bergen, Norway","Technical University of Denmark, Kongens Lyngby, Denmark"],"affiliations":[{"raw_affiliation_string":"Computational Biology Unit, Bergen Center for Computational Science, University of Bergen, Thorm\u00f8hlensgate 55, N-5008 Bergen, Norway","institution_ids":[]},{"raw_affiliation_string":"Technical University of Denmark, Kongens Lyngby, Denmark","institution_ids":["https://openalex.org/I96673099"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067360861","display_name":"Eivind Valen","orcid":"https://orcid.org/0000-0003-1840-6108"},"institutions":[{"id":"https://openalex.org/I96673099","display_name":"Technical University of Denmark","ror":"https://ror.org/04qtj9h94","country_code":"DK","type":"education","lineage":["https://openalex.org/I96673099"]}],"countries":["DK"],"is_corresponding":false,"raw_author_name":"E. Valen","raw_affiliation_strings":["Technical University of Denmark, Kongens Lyngby, Denmark"],"affiliations":[{"raw_affiliation_string":"Technical University of Denmark, Kongens Lyngby, Denmark","institution_ids":["https://openalex.org/I96673099"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001803514","display_name":"Man\u2010Hung Eric Tang","orcid":"https://orcid.org/0000-0002-3483-0219"},"institutions":[{"id":"https://openalex.org/I96673099","display_name":"Technical University of Denmark","ror":"https://ror.org/04qtj9h94","country_code":"DK","type":"education","lineage":["https://openalex.org/I96673099"]}],"countries":["DK"],"is_corresponding":false,"raw_author_name":"M.-H. E. Tang","raw_affiliation_strings":["Technical University of Denmark, Kongens Lyngby, Denmark"],"affiliations":[{"raw_affiliation_string":"Technical University of Denmark, Kongens Lyngby, Denmark","institution_ids":["https://openalex.org/I96673099"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064876078","display_name":"Troels Marstrand","orcid":"https://orcid.org/0000-0002-8290-223X"},"institutions":[{"id":"https://openalex.org/I96673099","display_name":"Technical University of Denmark","ror":"https://ror.org/04qtj9h94","country_code":"DK","type":"education","lineage":["https://openalex.org/I96673099"]}],"countries":["DK"],"is_corresponding":false,"raw_author_name":"T. Marstrand","raw_affiliation_strings":["Technical University of Denmark, Kongens Lyngby, Denmark"],"affiliations":[{"raw_affiliation_string":"Technical University of Denmark, Kongens Lyngby, Denmark","institution_ids":["https://openalex.org/I96673099"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082357240","display_name":"Ole Winther","orcid":"https://orcid.org/0000-0002-1966-3205"},"institutions":[{"id":"https://openalex.org/I96673099","display_name":"Technical University of Denmark","ror":"https://ror.org/04qtj9h94","country_code":"DK","type":"education","lineage":["https://openalex.org/I96673099"]}],"countries":["DK"],"is_corresponding":false,"raw_author_name":"O. Winther","raw_affiliation_strings":["Technical University of Denmark, Kongens Lyngby, Denmark"],"affiliations":[{"raw_affiliation_string":"Technical University of Denmark, Kongens Lyngby, Denmark","institution_ids":["https://openalex.org/I96673099"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014700799","display_name":"Isabelle da Piedade","orcid":null},"institutions":[{"id":"https://openalex.org/I96673099","display_name":"Technical University of Denmark","ror":"https://ror.org/04qtj9h94","country_code":"DK","type":"education","lineage":["https://openalex.org/I96673099"]}],"countries":["DK"],"is_corresponding":false,"raw_author_name":"I. da Piedade","raw_affiliation_strings":["Technical University of Denmark, Kongens Lyngby, Denmark"],"affiliations":[{"raw_affiliation_string":"Technical University of Denmark, Kongens Lyngby, Denmark","institution_ids":["https://openalex.org/I96673099"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083542637","display_name":"Anders Krogh","orcid":"https://orcid.org/0000-0002-5147-6282"},"institutions":[{"id":"https://openalex.org/I96673099","display_name":"Technical University of Denmark","ror":"https://ror.org/04qtj9h94","country_code":"DK","type":"education","lineage":["https://openalex.org/I96673099"]}],"countries":["DK"],"is_corresponding":false,"raw_author_name":"A. Krogh","raw_affiliation_strings":["Technical University of Denmark, Kongens Lyngby, Denmark"],"affiliations":[{"raw_affiliation_string":"Technical University of Denmark, Kongens Lyngby, Denmark","institution_ids":["https://openalex.org/I96673099"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052661284","display_name":"Boris Lenhard","orcid":"https://orcid.org/0000-0002-1114-1509"},"institutions":[{"id":"https://openalex.org/I96673099","display_name":"Technical University of Denmark","ror":"https://ror.org/04qtj9h94","country_code":"DK","type":"education","lineage":["https://openalex.org/I96673099"]}],"countries":["DK"],"is_corresponding":false,"raw_author_name":"B. Lenhard","raw_affiliation_strings":["Technical University of Denmark, Kongens Lyngby, Denmark"],"affiliations":[{"raw_affiliation_string":"Technical University of Denmark, Kongens Lyngby, Denmark","institution_ids":["https://openalex.org/I96673099"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5026910430","display_name":"Albin Sandelin","orcid":"https://orcid.org/0000-0002-7109-7378"},"institutions":[{"id":"https://openalex.org/I96673099","display_name":"Technical University of Denmark","ror":"https://ror.org/04qtj9h94","country_code":"DK","type":"education","lineage":["https://openalex.org/I96673099"]}],"countries":["DK"],"is_corresponding":false,"raw_author_name":"A. Sandelin","raw_affiliation_strings":["Technical University of Denmark, Kongens Lyngby, Denmark"],"affiliations":[{"raw_affiliation_string":"Technical University of Denmark, Kongens Lyngby, Denmark","institution_ids":["https://openalex.org/I96673099"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5108499417"],"corresponding_institution_ids":["https://openalex.org/I96673099"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":17.076,"has_fulltext":false,"cited_by_count":688,"citation_normalized_percentile":{"value":0.99602407,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":100},"biblio":{"volume":"36","issue":"Database","first_page":"D102","last_page":"D106"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9957000017166138,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9922000169754028,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7051883935928345},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.5191159248352051},{"id":"https://openalex.org/keywords/data-matrix","display_name":"Data Matrix","score":0.483803927898407},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3654715120792389},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.15348857641220093},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.1058817207813263}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7051883935928345},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.5191159248352051},{"id":"https://openalex.org/C2780985081","wikidata":"https://www.wikidata.org/wiki/Q676502","display_name":"Data Matrix","level":5,"score":0.483803927898407},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3654715120792389},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.15348857641220093},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1058817207813263},{"id":"https://openalex.org/C44465124","wikidata":"https://www.wikidata.org/wiki/Q713623","display_name":"Clade","level":4,"score":0.0},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003627","descriptor_name":"Data Interpretation, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003627","descriptor_name":"Data Interpretation, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003627","descriptor_name":"Data Interpretation, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011401","descriptor_name":"Promoter Regions, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011401","descriptor_name":"Promoter Regions, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011401","descriptor_name":"Promoter Regions, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D022126","descriptor_name":"Access to Information","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D022126","descriptor_name":"Access to Information","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D022126","descriptor_name":"Access to Information","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D022821","descriptor_name":"RNA Splice Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D022821","descriptor_name":"RNA Splice Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D022821","descriptor_name":"RNA Splice Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D050436","descriptor_name":"Regulatory Elements, Transcriptional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D050436","descriptor_name":"Regulatory Elements, Transcriptional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D050436","descriptor_name":"Regulatory Elements, Transcriptional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":7,"locations":[{"id":"doi:10.1093/nar/gkm955","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkm955","pdf_url":"https://academic.oup.com/nar/article-pdf/36/suppl_1/D102/7635284/gkm955.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:18006571","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18006571","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.1032.9728","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.1032.9728","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/content/36/suppl_1/D102.full.pdf","raw_type":"text"},{"id":"pmh:oai:bora.uib.no:1956/11949","is_oa":true,"landing_page_url":"http://hdl.handle.net/1956/11949","pdf_url":null,"source":{"id":"https://openalex.org/S4306400085","display_name":"Bergen Open Research Archive (BORA) (University of Bergen)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4432739","host_organization_name":"University of Bergen","host_organization_lineage":["https://openalex.org/I4432739"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2238834","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2238834","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"},{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/eeaea370-990d-11dd-86a6-000ea68e967b","is_oa":false,"landing_page_url":"https://researchprofiles.ku.dk/da/publications/eeaea370-990d-11dd-86a6-000ea68e967b","pdf_url":null,"source":{"id":"https://openalex.org/S4306401983","display_name":"Research at the University of Copenhagen (University of Copenhagen)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I124055696","host_organization_name":"University of Copenhagen","host_organization_lineage":["https://openalex.org/I124055696"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bryne , J C , Valen , E , Tang , M-H E , Marstrand , T , Winther , O , da Piedade , I , Krogh , A , Lenhard , B & Sandelin , A 2008 , ' JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update. ' , Nucleic Acids Research , vol. 36 , no. Database issue , pp. D102-6 . https://doi.org/10.1093/nar/gkm955","raw_type":"article"},{"id":"pmh:oai:pure.atira.dk:publications/52aae134-e0e9-45fa-9558-e668ab900fed","is_oa":false,"landing_page_url":"https://orbit.dtu.dk/en/publications/52aae134-e0e9-45fa-9558-e668ab900fed","pdf_url":null,"source":{"id":"https://openalex.org/S4306400705","display_name":"Technical University of Denmark, DTU Orbit (Technical University of Denmark, DTU)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I96673099","host_organization_name":"Technical University of Denmark","host_organization_lineage":["https://openalex.org/I96673099"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bryne , J C , Valen , E , Tang , M H E , Marstrand , T , Winther , O , da Piedade , I , Krogh , A , Lenhard , B & Sandelin , A 2008 , ' JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update ' , Nucleic Acids Research , vol. 36 , pp. D102-D106 . https://doi.org/10.1093/nar/gkm955","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1093/nar/gkm955","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkm955","pdf_url":"https://academic.oup.com/nar/article-pdf/36/suppl_1/D102/7635284/gkm955.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2095718954.pdf","grobid_xml":"https://content.openalex.org/works/W2095718954.grobid-xml"},"referenced_works_count":37,"referenced_works":["https://openalex.org/W1544923801","https://openalex.org/W1590648220","https://openalex.org/W1987122345","https://openalex.org/W1994122295","https://openalex.org/W1996760543","https://openalex.org/W2011457803","https://openalex.org/W2019462186","https://openalex.org/W2027662098","https://openalex.org/W2054003305","https://openalex.org/W2064940205","https://openalex.org/W2065635150","https://openalex.org/W2084620487","https://openalex.org/W2092902314","https://openalex.org/W2098023550","https://openalex.org/W2099468911","https://openalex.org/W2102304447","https://openalex.org/W2107580398","https://openalex.org/W2113833510","https://openalex.org/W2115836056","https://openalex.org/W2118596665","https://openalex.org/W2119804413","https://openalex.org/W2120900302","https://openalex.org/W2123246614","https://openalex.org/W2123490534","https://openalex.org/W2126561976","https://openalex.org/W2134193442","https://openalex.org/W2135722286","https://openalex.org/W2137653635","https://openalex.org/W2147231162","https://openalex.org/W2149769193","https://openalex.org/W2155340806","https://openalex.org/W2161600258","https://openalex.org/W2164364100","https://openalex.org/W2168157737","https://openalex.org/W2170698318","https://openalex.org/W4245145908","https://openalex.org/W4320800138"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2082860237","https://openalex.org/W2119695867","https://openalex.org/W2130076355","https://openalex.org/W1990804418","https://openalex.org/W1993764875","https://openalex.org/W2788277189","https://openalex.org/W2013243191","https://openalex.org/W2151865869","https://openalex.org/W2117258802"],"abstract_inverted_index":{"JASPAR":[0,24,44,46,94],"is":[1,95],"a":[2,84],"popular":[3],"open-access":[4],"database":[5],"for":[6,12,91],"matrix":[7,67,92],"models":[8,68,82],"describing":[9],"DNA-binding":[10],"preferences":[11],"transcription":[13],"factors":[14],"and":[15,28,37,54,83],"other":[16],"DNA":[17],"patterns.":[18],"With":[19],"its":[20],"third":[21],"major":[22],"release,":[23],"has":[25],"been":[26,60],"expanded":[27],"equipped":[29],"with":[30],"additional":[31],"functions":[32,63],"aimed":[33],"at":[34,97],"both":[35],"casual":[36],"power":[38],"users.":[39],"The":[40],"heart":[41],"of":[42,66,72,80],"the":[43],"database-the":[45],"CORE":[47],"sub-database-has":[48],"increased":[49],"by":[50,69,75],"12%":[51],"in":[52],"size,":[53],"three":[55],"new":[56],"specialized":[57],"sub-databases":[58],"have":[59],"added.":[61],"New":[62],"include":[64],"clustering":[65],"similarity,":[70],"generation":[71],"random":[73],"matrices":[74],"sampling":[76],"from":[77],"selected":[78],"sets":[79],"existing":[81],"language-independent":[85],"Web":[86],"Service":[87],"applications":[88],"programming":[89],"interface":[90],"retrieval.":[93],"available":[96],"http://jaspar.genereg.net.":[98]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":11},{"year":2024,"cited_by_count":8},{"year":2023,"cited_by_count":17},{"year":2022,"cited_by_count":7},{"year":2021,"cited_by_count":16},{"year":2020,"cited_by_count":12},{"year":2019,"cited_by_count":21},{"year":2018,"cited_by_count":25},{"year":2017,"cited_by_count":19},{"year":2016,"cited_by_count":29},{"year":2015,"cited_by_count":43},{"year":2014,"cited_by_count":90},{"year":2013,"cited_by_count":102},{"year":2012,"cited_by_count":81}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}