{"id":"https://openalex.org/W2163017458","doi":"https://doi.org/10.1093/nar/gkm800","title":"PPT-DB: the protein property prediction and testing database","display_name":"PPT-DB: the protein property prediction and testing database","publication_year":2007,"publication_date":"2007-10-05","ids":{"openalex":"https://openalex.org/W2163017458","doi":"https://doi.org/10.1093/nar/gkm800","mag":"2163017458","pmid":"https://pubmed.ncbi.nlm.nih.gov/17916570"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkm800","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkm800","pdf_url":"https://academic.oup.com/nar/article-pdf/36/suppl_1/D222/7628201/gkm800.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/36/suppl_1/D222/7628201/gkm800.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5003573061","display_name":"David S. Wishart","orcid":"https://orcid.org/0000-0002-3207-2434"},"institutions":[{"id":"https://openalex.org/I154425047","display_name":"University of Alberta","ror":"https://ror.org/0160cpw27","country_code":"CA","type":"education","lineage":["https://openalex.org/I154425047"]},{"id":"https://openalex.org/I40752897","display_name":"National Institute for Nanotechnology","ror":"https://ror.org/05c0g2426","country_code":"CA","type":"facility","lineage":["https://openalex.org/I40752897","https://openalex.org/I4210159778"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"D. S. Wishart","raw_affiliation_strings":["Department of Biological Sciences, Department of Computing Science, University of Alberta, Edmonton, Alberta, Canada","Department of Biological Sciences, 2 Department of Computing Science, University of Alberta, Edmonton, Alberta, Canada T6G 2E8 and 3 National Institute for Nanotechnology, 11421 Saskatchewan Drive, Edmonton, AB, Canada T6G 2M9"],"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, Department of Computing Science, University of Alberta, Edmonton, Alberta, Canada","institution_ids":[]},{"raw_affiliation_string":"Department of Biological Sciences, 2 Department of Computing Science, University of Alberta, Edmonton, Alberta, Canada T6G 2E8 and 3 National Institute for Nanotechnology, 11421 Saskatchewan Drive, Edmonton, AB, Canada T6G 2M9","institution_ids":["https://openalex.org/I40752897","https://openalex.org/I154425047"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041046661","display_name":"D. Arndt","orcid":null},"institutions":[{"id":"https://openalex.org/I40752897","display_name":"National Institute for Nanotechnology","ror":"https://ror.org/05c0g2426","country_code":"CA","type":"facility","lineage":["https://openalex.org/I40752897","https://openalex.org/I4210159778"]},{"id":"https://openalex.org/I154425047","display_name":"University of Alberta","ror":"https://ror.org/0160cpw27","country_code":"CA","type":"education","lineage":["https://openalex.org/I154425047"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"D. Arndt","raw_affiliation_strings":["Department of Biological Sciences, 2 Department of Computing Science, University of Alberta, Edmonton, Alberta, Canada T6G 2E8 and 3 National Institute for Nanotechnology, 11421 Saskatchewan Drive, Edmonton, AB, Canada T6G 2M9"],"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, 2 Department of Computing Science, University of Alberta, Edmonton, Alberta, Canada T6G 2E8 and 3 National Institute for Nanotechnology, 11421 Saskatchewan Drive, Edmonton, AB, Canada T6G 2M9","institution_ids":["https://openalex.org/I40752897","https://openalex.org/I154425047"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020947661","display_name":"Mark Berjanskii","orcid":null},"institutions":[{"id":"https://openalex.org/I154425047","display_name":"University of Alberta","ror":"https://ror.org/0160cpw27","country_code":"CA","type":"education","lineage":["https://openalex.org/I154425047"]},{"id":"https://openalex.org/I40752897","display_name":"National Institute for Nanotechnology","ror":"https://ror.org/05c0g2426","country_code":"CA","type":"facility","lineage":["https://openalex.org/I40752897","https://openalex.org/I4210159778"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"M. Berjanskii","raw_affiliation_strings":["Department of Biological Sciences, 2 Department of Computing Science, University of Alberta, Edmonton, Alberta, Canada T6G 2E8 and 3 National Institute for Nanotechnology, 11421 Saskatchewan Drive, Edmonton, AB, Canada T6G 2M9"],"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, 2 Department of Computing Science, University of Alberta, Edmonton, Alberta, Canada T6G 2E8 and 3 National Institute for Nanotechnology, 11421 Saskatchewan Drive, Edmonton, AB, Canada T6G 2M9","institution_ids":["https://openalex.org/I40752897","https://openalex.org/I154425047"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113668291","display_name":"An Chi Guo","orcid":"https://orcid.org/0009-0003-7256-1317"},"institutions":[{"id":"https://openalex.org/I154425047","display_name":"University of Alberta","ror":"https://ror.org/0160cpw27","country_code":"CA","type":"education","lineage":["https://openalex.org/I154425047"]},{"id":"https://openalex.org/I40752897","display_name":"National Institute for Nanotechnology","ror":"https://ror.org/05c0g2426","country_code":"CA","type":"facility","lineage":["https://openalex.org/I40752897","https://openalex.org/I4210159778"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"A. C. Guo","raw_affiliation_strings":["Department of Biological Sciences, 2 Department of Computing Science, University of Alberta, Edmonton, Alberta, Canada T6G 2E8 and 3 National Institute for Nanotechnology, 11421 Saskatchewan Drive, Edmonton, AB, Canada T6G 2M9"],"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, 2 Department of Computing Science, University of Alberta, Edmonton, Alberta, Canada T6G 2E8 and 3 National Institute for Nanotechnology, 11421 Saskatchewan Drive, Edmonton, AB, Canada T6G 2M9","institution_ids":["https://openalex.org/I40752897","https://openalex.org/I154425047"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088947252","display_name":"Yi Shi","orcid":"https://orcid.org/0000-0002-5279-3239"},"institutions":[{"id":"https://openalex.org/I154425047","display_name":"University of Alberta","ror":"https://ror.org/0160cpw27","country_code":"CA","type":"education","lineage":["https://openalex.org/I154425047"]},{"id":"https://openalex.org/I40752897","display_name":"National Institute for Nanotechnology","ror":"https://ror.org/05c0g2426","country_code":"CA","type":"facility","lineage":["https://openalex.org/I40752897","https://openalex.org/I4210159778"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Y. Shi","raw_affiliation_strings":["Department of Biological Sciences, 2 Department of Computing Science, University of Alberta, Edmonton, Alberta, Canada T6G 2E8 and 3 National Institute for Nanotechnology, 11421 Saskatchewan Drive, Edmonton, AB, Canada T6G 2M9"],"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, 2 Department of Computing Science, University of Alberta, Edmonton, Alberta, Canada T6G 2E8 and 3 National Institute for Nanotechnology, 11421 Saskatchewan Drive, Edmonton, AB, Canada T6G 2M9","institution_ids":["https://openalex.org/I40752897","https://openalex.org/I154425047"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074814702","display_name":"S. Shrivastava","orcid":null},"institutions":[{"id":"https://openalex.org/I40752897","display_name":"National Institute for Nanotechnology","ror":"https://ror.org/05c0g2426","country_code":"CA","type":"facility","lineage":["https://openalex.org/I40752897","https://openalex.org/I4210159778"]},{"id":"https://openalex.org/I154425047","display_name":"University of Alberta","ror":"https://ror.org/0160cpw27","country_code":"CA","type":"education","lineage":["https://openalex.org/I154425047"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"S. Shrivastava","raw_affiliation_strings":["Department of Biological Sciences, 2 Department of Computing Science, University of Alberta, Edmonton, Alberta, Canada T6G 2E8 and 3 National Institute for Nanotechnology, 11421 Saskatchewan Drive, Edmonton, AB, Canada T6G 2M9"],"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, 2 Department of Computing Science, University of Alberta, Edmonton, Alberta, Canada T6G 2E8 and 3 National Institute for Nanotechnology, 11421 Saskatchewan Drive, Edmonton, AB, Canada T6G 2M9","institution_ids":["https://openalex.org/I40752897","https://openalex.org/I154425047"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024564391","display_name":"Jianjun Zhou","orcid":"https://orcid.org/0000-0001-9122-2933"},"institutions":[{"id":"https://openalex.org/I154425047","display_name":"University of Alberta","ror":"https://ror.org/0160cpw27","country_code":"CA","type":"education","lineage":["https://openalex.org/I154425047"]},{"id":"https://openalex.org/I40752897","display_name":"National Institute for Nanotechnology","ror":"https://ror.org/05c0g2426","country_code":"CA","type":"facility","lineage":["https://openalex.org/I40752897","https://openalex.org/I4210159778"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"J. Zhou","raw_affiliation_strings":["Department of Biological Sciences, 2 Department of Computing Science, University of Alberta, Edmonton, Alberta, Canada T6G 2E8 and 3 National Institute for Nanotechnology, 11421 Saskatchewan Drive, Edmonton, AB, Canada T6G 2M9"],"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, 2 Department of Computing Science, University of Alberta, Edmonton, Alberta, Canada T6G 2E8 and 3 National Institute for Nanotechnology, 11421 Saskatchewan Drive, Edmonton, AB, Canada T6G 2M9","institution_ids":["https://openalex.org/I40752897","https://openalex.org/I154425047"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073467023","display_name":"You Zhou","orcid":"https://orcid.org/0000-0002-7081-921X"},"institutions":[{"id":"https://openalex.org/I40752897","display_name":"National Institute for Nanotechnology","ror":"https://ror.org/05c0g2426","country_code":"CA","type":"facility","lineage":["https://openalex.org/I40752897","https://openalex.org/I4210159778"]},{"id":"https://openalex.org/I154425047","display_name":"University of Alberta","ror":"https://ror.org/0160cpw27","country_code":"CA","type":"education","lineage":["https://openalex.org/I154425047"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Y. Zhou","raw_affiliation_strings":["Department of Biological Sciences, 2 Department of Computing Science, University of Alberta, Edmonton, Alberta, Canada T6G 2E8 and 3 National Institute for Nanotechnology, 11421 Saskatchewan Drive, Edmonton, AB, Canada T6G 2M9"],"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, 2 Department of Computing Science, University of Alberta, Edmonton, Alberta, Canada T6G 2E8 and 3 National Institute for Nanotechnology, 11421 Saskatchewan Drive, Edmonton, AB, Canada T6G 2M9","institution_ids":["https://openalex.org/I40752897","https://openalex.org/I154425047"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5089344475","display_name":"Guohui Lin","orcid":"https://orcid.org/0000-0003-4283-3396"},"institutions":[{"id":"https://openalex.org/I154425047","display_name":"University of Alberta","ror":"https://ror.org/0160cpw27","country_code":"CA","type":"education","lineage":["https://openalex.org/I154425047"]},{"id":"https://openalex.org/I40752897","display_name":"National Institute for Nanotechnology","ror":"https://ror.org/05c0g2426","country_code":"CA","type":"facility","lineage":["https://openalex.org/I40752897","https://openalex.org/I4210159778"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"G. Lin","raw_affiliation_strings":["Department of Biological Sciences, 2 Department of Computing Science, University of Alberta, Edmonton, Alberta, Canada T6G 2E8 and 3 National Institute for Nanotechnology, 11421 Saskatchewan Drive, Edmonton, AB, Canada T6G 2M9"],"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, 2 Department of Computing Science, University of Alberta, Edmonton, Alberta, Canada T6G 2E8 and 3 National Institute for Nanotechnology, 11421 Saskatchewan Drive, Edmonton, AB, Canada T6G 2M9","institution_ids":["https://openalex.org/I40752897","https://openalex.org/I154425047"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5003573061"],"corresponding_institution_ids":["https://openalex.org/I154425047","https://openalex.org/I40752897"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":1.0718,"has_fulltext":false,"cited_by_count":21,"citation_normalized_percentile":{"value":0.76418918,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"36","issue":"Database","first_page":"D222","last_page":"D229"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9962000250816345,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/property","display_name":"Property (philosophy)","score":0.71877121925354},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.563694179058075},{"id":"https://openalex.org/keywords/categorical-variable","display_name":"Categorical variable","score":0.5150325298309326},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.4810043275356293},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.46928250789642334},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.46365129947662354},{"id":"https://openalex.org/keywords/protein-sequencing","display_name":"Protein sequencing","score":0.46146538853645325},{"id":"https://openalex.org/keywords/protein-folding","display_name":"Protein folding","score":0.451445996761322},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.45002323389053345},{"id":"https://openalex.org/keywords/protein-structure-prediction","display_name":"Protein structure prediction","score":0.4431374669075012},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.43377649784088135},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.4259004294872284},{"id":"https://openalex.org/keywords/folding","display_name":"Folding (DSP implementation)","score":0.421970933675766},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.41683024168014526},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.36751189827919006},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3627743124961853},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.239829421043396},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.21463871002197266},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.18957048654556274},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.1814386248588562},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.09388205409049988}],"concepts":[{"id":"https://openalex.org/C189950617","wikidata":"https://www.wikidata.org/wiki/Q937228","display_name":"Property (philosophy)","level":2,"score":0.71877121925354},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.563694179058075},{"id":"https://openalex.org/C5274069","wikidata":"https://www.wikidata.org/wiki/Q2285707","display_name":"Categorical variable","level":2,"score":0.5150325298309326},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.4810043275356293},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.46928250789642334},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.46365129947662354},{"id":"https://openalex.org/C10010492","wikidata":"https://www.wikidata.org/wiki/Q3142557","display_name":"Protein sequencing","level":4,"score":0.46146538853645325},{"id":"https://openalex.org/C204328495","wikidata":"https://www.wikidata.org/wiki/Q847556","display_name":"Protein folding","level":2,"score":0.451445996761322},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.45002323389053345},{"id":"https://openalex.org/C18051474","wikidata":"https://www.wikidata.org/wiki/Q899656","display_name":"Protein structure prediction","level":3,"score":0.4431374669075012},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.43377649784088135},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.4259004294872284},{"id":"https://openalex.org/C2776545253","wikidata":"https://www.wikidata.org/wiki/Q5464292","display_name":"Folding (DSP implementation)","level":2,"score":0.421970933675766},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.41683024168014526},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.36751189827919006},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3627743124961853},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.239829421043396},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.21463871002197266},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.18957048654556274},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.1814386248588562},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.09388205409049988},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011786","descriptor_name":"Quality Control","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011786","descriptor_name":"Quality Control","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011786","descriptor_name":"Quality Control","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011786","descriptor_name":"Quality Control","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017386","descriptor_name":"Sequence Homology, Amino Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017386","descriptor_name":"Sequence Homology, Amino Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017386","descriptor_name":"Sequence Homology, Amino Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017386","descriptor_name":"Sequence Homology, Amino Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gkm800","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkm800","pdf_url":"https://academic.oup.com/nar/article-pdf/36/suppl_1/D222/7628201/gkm800.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:17916570","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17916570","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:2238980","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2238980","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkm800","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkm800","pdf_url":"https://academic.oup.com/nar/article-pdf/36/suppl_1/D222/7628201/gkm800.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/11","score":0.6299999952316284,"display_name":"Sustainable cities and communities"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320310787","display_name":"Genome Canada","ror":"https://ror.org/029s29983"},{"id":"https://openalex.org/F4320326646","display_name":"Genome Alberta","ror":null},{"id":"https://openalex.org/F4320334593","display_name":"Natural Sciences and Engineering Research Council of Canada","ror":"https://ror.org/01h531d29"},{"id":"https://openalex.org/F4320337169","display_name":"Alberta Prion Research Institute","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2163017458.pdf","grobid_xml":"https://content.openalex.org/works/W2163017458.grobid-xml"},"referenced_works_count":30,"referenced_works":["https://openalex.org/W171003663","https://openalex.org/W1545479202","https://openalex.org/W1602915164","https://openalex.org/W1606410455","https://openalex.org/W1965151258","https://openalex.org/W1981387027","https://openalex.org/W1988004370","https://openalex.org/W2037704831","https://openalex.org/W2052623701","https://openalex.org/W2053721311","https://openalex.org/W2063608300","https://openalex.org/W2075811373","https://openalex.org/W2079928393","https://openalex.org/W2089597488","https://openalex.org/W2096495474","https://openalex.org/W2098187773","https://openalex.org/W2098783856","https://openalex.org/W2104226349","https://openalex.org/W2104652092","https://openalex.org/W2109261827","https://openalex.org/W2109872885","https://openalex.org/W2117709367","https://openalex.org/W2121293808","https://openalex.org/W2139592083","https://openalex.org/W2141803423","https://openalex.org/W2152178770","https://openalex.org/W2152770371","https://openalex.org/W2153153865","https://openalex.org/W2161746138","https://openalex.org/W2177731497"],"related_works":["https://openalex.org/W2035942032","https://openalex.org/W1594583051","https://openalex.org/W3044593510","https://openalex.org/W2040374420","https://openalex.org/W2032013788","https://openalex.org/W2092087990","https://openalex.org/W2042620497","https://openalex.org/W2053671774","https://openalex.org/W2167420772","https://openalex.org/W1635142857"],"abstract_inverted_index":{"The":[0,127],"protein":[1,23,86,118,140,178],"property":[2,24,87,119,141,156],"prediction":[3,120,236],"and":[4,38,78,109,152,180,238],"testing":[5,108],"database":[6,10],"(PPT-DB)":[7],"is":[8,60,68,134,221,226],"a":[9,55,73,96,136,148,154,159],"housing":[11],"nearly":[12],"30":[13],"carefully":[14],"curated":[15],"databases,":[16],"each":[17],"of":[18,57,82,117,150,167,209,240],"which":[19],"contains":[20],"commonly":[21],"predicted":[22,157],"information.":[25],"These":[26],"properties":[27,182],"include":[28],"both":[29],"structural":[30],"(i.e.":[31,40],"secondary":[32,204],"structure,":[33],"contact":[34],"order,":[35],"disulfide":[36],"pairing)":[37],"dynamic":[39,181],"order":[41],"parameters,":[42],"B-factors,":[43],"folding":[44],"rates)":[45],"features":[46],"that":[47,130,177],"have":[48,153],"been":[49],"measured,":[50],"derived":[51,190],"or":[52,84,206],"tabulated":[53],"from":[54,191,229],"variety":[56],"sources.":[58],"PPT-DB":[59,92,131,146,172],"designed":[61],"to":[62,70,103,125],"serve":[63,71,94],"two":[64],"purposes.":[65],"First":[66],"it":[67],"intended":[69],"as":[72,95,135,203,215],"centralized,":[74],"up-to-date,":[75],"freely":[76],"downloadable":[77],"easily":[79],"queried":[80],"repository":[81,100],"predictable":[83],"'derived'":[85],"data.":[88],"In":[89],"this":[90],"role,":[91],"can":[93,132],"one-stop,":[97],"fully":[98],"standardized":[99],"for":[101,113,138],"developers":[102],"obtain":[104],"the":[105,174],"required":[106],"training,":[107],"validation":[110],"data":[111],"needed":[112],"almost":[114],"any":[115],"kind":[116],"program":[121],"they":[122],"may":[123,144],"wish":[124],"create.":[126],"second":[128],"role":[129],"play":[133],"tool":[137],"homology-based":[139],"prediction.":[142],"Users":[143],"query":[145],"with":[147,169],"sequence":[149,160],"interest":[151],"specific":[155],"using":[158],"similarity":[161,193],"search":[162],"against":[163],"PPT-DB's":[164,192],"extensive":[165],"collection":[166],"proteins":[168],"known":[170],"properties.":[171],"exploits":[173],"well-known":[175],"fact":[176],"structure":[179],"are":[183,195,243],"highly":[184],"conserved":[185],"between":[186],"homologous":[187],"proteins.":[188],"Predictions":[189],"searches":[194],"typically":[196,227],"85-95%":[197],"correct":[198],"(for":[199,211],"categorical":[200],"predictions,":[201,213],"such":[202,214],"structure)":[205],"exhibit":[207],"correlations":[208],">0.80":[210],"numeric":[212],"accessible":[216],"surface":[217],"area).":[218],"This":[219],"performance":[220],"10-20%":[222],"better":[223],"than":[224],"what":[225],"obtained":[228],"standard":[230],"'ab":[231],"initio'":[232],"predictions.":[233],"PPT-DB,":[234],"its":[235,241],"utilities":[237],"all":[239],"contents":[242],"available":[244],"at":[245],"http://www.pptdb.ca.":[246]},"counts_by_year":[{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":2}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
