{"id":"https://openalex.org/W2054373621","doi":"https://doi.org/10.1093/nar/gkm697","title":"The Gypsy Database (GyDB) of mobile genetic elements","display_name":"The Gypsy Database (GyDB) of mobile genetic elements","publication_year":2007,"publication_date":"2007-09-26","ids":{"openalex":"https://openalex.org/W2054373621","doi":"https://doi.org/10.1093/nar/gkm697","mag":"2054373621","pmid":"https://pubmed.ncbi.nlm.nih.gov/17895280"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkm697","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkm697","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/nar/gkm697","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5037439879","display_name":"Carlos Llor\u00e9ns","orcid":"https://orcid.org/0000-0003-1402-4743"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"C. Llorens","raw_affiliation_strings":["Biotech Vana, Valencia, Institut Cavanilles de Biodiversitat i Biolog\u00eda Evolutiva Universitat de Val\u00e8ncia, Spain"],"affiliations":[{"raw_affiliation_string":"Biotech Vana, Valencia, Institut Cavanilles de Biodiversitat i Biolog\u00eda Evolutiva Universitat de Val\u00e8ncia, Spain","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076747986","display_name":"Ricardo Futami","orcid":null},"institutions":[{"id":"https://openalex.org/I4210154894","display_name":"Centro de Investigaci\u00f3n Biom\u00e9dica en Red de Epidemiolog\u00eda y Salud P\u00fablica","ror":"https://ror.org/050q0kv47","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2801357902","https://openalex.org/I4210115082","https://openalex.org/I4210154894","https://openalex.org/I4387152914"]},{"id":"https://openalex.org/I16097986","display_name":"Universitat de Val\u00e8ncia","ror":"https://ror.org/043nxc105","country_code":"ES","type":"education","lineage":["https://openalex.org/I16097986"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"R. Futami","raw_affiliation_strings":["Biotech Vana, Valencia, 2 Institut Cavanilles de Biodiversitat i Biolog\u00eda Evolutiva Universitat de Val\u00e8ncia, Spain, 3 HIV Monitoring Foundation, Amsterdam, The Netherlands and 4 CIBER de Epidemiolog\u00eda y Salud P\u00fablica (CIBERESP), Spain"],"affiliations":[{"raw_affiliation_string":"Biotech Vana, Valencia, 2 Institut Cavanilles de Biodiversitat i Biolog\u00eda Evolutiva Universitat de Val\u00e8ncia, Spain, 3 HIV Monitoring Foundation, Amsterdam, The Netherlands and 4 CIBER de Epidemiolog\u00eda y Salud P\u00fablica (CIBERESP), Spain","institution_ids":["https://openalex.org/I4210154894","https://openalex.org/I16097986"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103138084","display_name":"Daniela Bezemer","orcid":"https://orcid.org/0000-0001-9304-0877"},"institutions":[{"id":"https://openalex.org/I4210154894","display_name":"Centro de Investigaci\u00f3n Biom\u00e9dica en Red de Epidemiolog\u00eda y Salud P\u00fablica","ror":"https://ror.org/050q0kv47","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2801357902","https://openalex.org/I4210115082","https://openalex.org/I4210154894","https://openalex.org/I4387152914"]},{"id":"https://openalex.org/I16097986","display_name":"Universitat de Val\u00e8ncia","ror":"https://ror.org/043nxc105","country_code":"ES","type":"education","lineage":["https://openalex.org/I16097986"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"D. Bezemer","raw_affiliation_strings":["Biotech Vana, Valencia, 2 Institut Cavanilles de Biodiversitat i Biolog\u00eda Evolutiva Universitat de Val\u00e8ncia, Spain, 3 HIV Monitoring Foundation, Amsterdam, The Netherlands and 4 CIBER de Epidemiolog\u00eda y Salud P\u00fablica (CIBERESP), Spain"],"affiliations":[{"raw_affiliation_string":"Biotech Vana, Valencia, 2 Institut Cavanilles de Biodiversitat i Biolog\u00eda Evolutiva Universitat de Val\u00e8ncia, Spain, 3 HIV Monitoring Foundation, Amsterdam, The Netherlands and 4 CIBER de Epidemiolog\u00eda y Salud P\u00fablica (CIBERESP), Spain","institution_ids":["https://openalex.org/I4210154894","https://openalex.org/I16097986"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5004234488","display_name":"Andr\u00e9s Moy\u00e1","orcid":"https://orcid.org/0000-0002-2867-1119"},"institutions":[{"id":"https://openalex.org/I16097986","display_name":"Universitat de Val\u00e8ncia","ror":"https://ror.org/043nxc105","country_code":"ES","type":"education","lineage":["https://openalex.org/I16097986"]},{"id":"https://openalex.org/I4210154894","display_name":"Centro de Investigaci\u00f3n Biom\u00e9dica en Red de Epidemiolog\u00eda y Salud P\u00fablica","ror":"https://ror.org/050q0kv47","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2801357902","https://openalex.org/I4210115082","https://openalex.org/I4210154894","https://openalex.org/I4387152914"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"A. Moya","raw_affiliation_strings":["Biotech Vana, Valencia, 2 Institut Cavanilles de Biodiversitat i Biolog\u00eda Evolutiva Universitat de Val\u00e8ncia, Spain, 3 HIV Monitoring Foundation, Amsterdam, The Netherlands and 4 CIBER de Epidemiolog\u00eda y Salud P\u00fablica (CIBERESP), Spain"],"affiliations":[{"raw_affiliation_string":"Biotech Vana, Valencia, 2 Institut Cavanilles de Biodiversitat i Biolog\u00eda Evolutiva Universitat de Val\u00e8ncia, Spain, 3 HIV Monitoring Foundation, Amsterdam, The Netherlands and 4 CIBER de Epidemiolog\u00eda y Salud P\u00fablica (CIBERESP), Spain","institution_ids":["https://openalex.org/I4210154894","https://openalex.org/I16097986"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5037439879"],"corresponding_institution_ids":[],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":9.1961,"has_fulltext":false,"cited_by_count":53,"citation_normalized_percentile":{"value":0.97521691,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"36","issue":"Database","first_page":"D38","last_page":"D46"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9697999954223633,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9593999981880188,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.8895446062088013},{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.7262068390846252},{"id":"https://openalex.org/keywords/endogenous-retrovirus","display_name":"Endogenous retrovirus","score":0.5798407793045044},{"id":"https://openalex.org/keywords/long-terminal-repeat","display_name":"Long terminal repeat","score":0.5700443387031555},{"id":"https://openalex.org/keywords/monophyly","display_name":"Monophyly","score":0.5328370332717896},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.5054435729980469},{"id":"https://openalex.org/keywords/reverse-transcriptase","display_name":"Reverse transcriptase","score":0.5008940696716309},{"id":"https://openalex.org/keywords/phylogenetics","display_name":"Phylogenetics","score":0.4958396852016449},{"id":"https://openalex.org/keywords/genetic-diversity","display_name":"Genetic diversity","score":0.4914010763168335},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.47943466901779175},{"id":"https://openalex.org/keywords/mobile-genetic-elements","display_name":"Mobile genetic elements","score":0.4579753577709198},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3352968692779541},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.21155786514282227},{"id":"https://openalex.org/keywords/polymerase-chain-reaction","display_name":"Polymerase chain reaction","score":0.17333918809890747},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.11989179253578186},{"id":"https://openalex.org/keywords/clade","display_name":"Clade","score":0.07531487941741943}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8895446062088013},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.7262068390846252},{"id":"https://openalex.org/C121346293","wikidata":"https://www.wikidata.org/wiki/Q1340715","display_name":"Endogenous retrovirus","level":4,"score":0.5798407793045044},{"id":"https://openalex.org/C199491388","wikidata":"https://www.wikidata.org/wiki/Q1869477","display_name":"Long terminal repeat","level":4,"score":0.5700443387031555},{"id":"https://openalex.org/C12326286","wikidata":"https://www.wikidata.org/wiki/Q210958","display_name":"Monophyly","level":5,"score":0.5328370332717896},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5054435729980469},{"id":"https://openalex.org/C156719811","wikidata":"https://www.wikidata.org/wiki/Q28774","display_name":"Reverse transcriptase","level":4,"score":0.5008940696716309},{"id":"https://openalex.org/C90132467","wikidata":"https://www.wikidata.org/wiki/Q171184","display_name":"Phylogenetics","level":3,"score":0.4958396852016449},{"id":"https://openalex.org/C81977670","wikidata":"https://www.wikidata.org/wiki/Q585259","display_name":"Genetic diversity","level":3,"score":0.4914010763168335},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.47943466901779175},{"id":"https://openalex.org/C132533263","wikidata":"https://www.wikidata.org/wiki/Q2347362","display_name":"Mobile genetic elements","level":4,"score":0.4579753577709198},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3352968692779541},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.21155786514282227},{"id":"https://openalex.org/C49105822","wikidata":"https://www.wikidata.org/wiki/Q176996","display_name":"Polymerase chain reaction","level":3,"score":0.17333918809890747},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.11989179253578186},{"id":"https://openalex.org/C44465124","wikidata":"https://www.wikidata.org/wiki/Q713623","display_name":"Clade","level":4,"score":0.07531487941741943},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.0},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D005814","descriptor_name":"Genes, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005814","descriptor_name":"Genes, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005814","descriptor_name":"Genes, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005814","descriptor_name":"Genes, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012190","descriptor_name":"Retroviridae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012190","descriptor_name":"Retroviridae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012190","descriptor_name":"Retroviridae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012190","descriptor_name":"Retroviridae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012191","descriptor_name":"Retroviridae Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D012191","descriptor_name":"Retroviridae Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D012191","descriptor_name":"Retroviridae Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D012191","descriptor_name":"Retroviridae Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D012191","descriptor_name":"Retroviridae Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012191","descriptor_name":"Retroviridae Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012191","descriptor_name":"Retroviridae Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012191","descriptor_name":"Retroviridae Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012191","descriptor_name":"Retroviridae Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012191","descriptor_name":"Retroviridae Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012191","descriptor_name":"Retroviridae Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012191","descriptor_name":"Retroviridae Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018626","descriptor_name":"Retroelements","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018626","descriptor_name":"Retroelements","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018626","descriptor_name":"Retroelements","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018626","descriptor_name":"Retroelements","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020079","descriptor_name":"Terminal Repeat Sequences","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020079","descriptor_name":"Terminal Repeat Sequences","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020079","descriptor_name":"Terminal Repeat Sequences","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020079","descriptor_name":"Terminal Repeat Sequences","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gkm697","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkm697","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:17895280","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17895280","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.292.5466","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.292.5466","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ftp://ftp.ncbi.nlm.nih.gov/pub/pmc/bd/0e/Nucleic_Acids_Res_2011_Jan_29_39(Database_issue)_D70-D74.tar.gz","raw_type":"text"},{"id":"pmh:oai:pubmedcentral.nih.gov:2238898","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2238898","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkm697","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkm697","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320334626","display_name":"Medical Research Council","ror":"https://ror.org/03x94j517"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":65,"referenced_works":["https://openalex.org/W56603265","https://openalex.org/W132994223","https://openalex.org/W233486025","https://openalex.org/W641091501","https://openalex.org/W1209236871","https://openalex.org/W1486570893","https://openalex.org/W1495845650","https://openalex.org/W1554644662","https://openalex.org/W1956732739","https://openalex.org/W1968873679","https://openalex.org/W1975598066","https://openalex.org/W1976228664","https://openalex.org/W1977282539","https://openalex.org/W1988714210","https://openalex.org/W2005663625","https://openalex.org/W2007302594","https://openalex.org/W2016534065","https://openalex.org/W2020974409","https://openalex.org/W2025497710","https://openalex.org/W2026163444","https://openalex.org/W2040197227","https://openalex.org/W2047111246","https://openalex.org/W2048756840","https://openalex.org/W2050557699","https://openalex.org/W2052868170","https://openalex.org/W2053611312","https://openalex.org/W2053880432","https://openalex.org/W2077977437","https://openalex.org/W2083378882","https://openalex.org/W2084192026","https://openalex.org/W2085708372","https://openalex.org/W2085747761","https://openalex.org/W2086143621","https://openalex.org/W2094339092","https://openalex.org/W2097382368","https://openalex.org/W2097706568","https://openalex.org/W2101721245","https://openalex.org/W2103065856","https://openalex.org/W2108337027","https://openalex.org/W2111449820","https://openalex.org/W2115705338","https://openalex.org/W2118969624","https://openalex.org/W2128827201","https://openalex.org/W2140525494","https://openalex.org/W2143254841","https://openalex.org/W2144666203","https://openalex.org/W2146133538","https://openalex.org/W2149055080","https://openalex.org/W2151147733","https://openalex.org/W2151464048","https://openalex.org/W2151831732","https://openalex.org/W2155428691","https://openalex.org/W2158714788","https://openalex.org/W2161844448","https://openalex.org/W2168909179","https://openalex.org/W2169644252","https://openalex.org/W2221571340","https://openalex.org/W2327639708","https://openalex.org/W2558766452","https://openalex.org/W2601913882","https://openalex.org/W4205911826","https://openalex.org/W4229621228","https://openalex.org/W4242565687","https://openalex.org/W4254683601","https://openalex.org/W4301120021"],"related_works":["https://openalex.org/W2462485992","https://openalex.org/W2039385853","https://openalex.org/W2069910696","https://openalex.org/W1971625212","https://openalex.org/W4211168216","https://openalex.org/W2031443751","https://openalex.org/W2101962898","https://openalex.org/W2403224177","https://openalex.org/W2620530030","https://openalex.org/W4394727590"],"abstract_inverted_index":{"In":[0,28],"this":[1,29],"article,":[2],"we":[3,32],"introduce":[4],"the":[5,18,47,88,95,122,165],"Gypsy":[6],"Database":[7],"(GyDB)":[8],"of":[9,24,62,126,135,157,167],"mobile":[10,25],"genetic":[11,26],"elements,":[12],"an":[13],"in-progress":[14],"database":[15],"devoted":[16],"to":[17,98,148],"non-redundant":[19,160],"analysis":[20],"and":[21,36,102,111,159,170],"evolutionary-based":[22],"classification":[23],"elements.":[27],"first":[30],"version,":[31],"contemplate":[33],"eukaryotic":[34],"Ty3/Gypsy":[35,65,169],"Retroviridae":[37,171],"long":[38],"terminal":[39],"repeats":[40],"(LTR)":[41],"retroelements.":[42],"Phylogenetic":[43],"analyses":[44],"based":[45],"on":[46],"gag-pro-pol":[48,123],"internal":[49,124],"region":[50,125],"commonly":[51],"presented":[52],"by":[53,87,105,121],"these":[54,127],"two":[55,128],"groups":[56,82,129],"strongly":[57],"support":[58],"a":[59,132,136,145,154],"certain":[60],"number":[61],"previously":[63],"described":[64],"lineages":[66],"originally":[67],"reported":[68],"from":[69],"reverse-transcriptase":[70],"(RT)":[71],"analyses.":[72],"Vertebrate":[73],"retroviruses":[74,104],"(Retroviridae)":[75],"are":[76],"also":[77],"constituted":[78],"in":[79,131,153,164],"several":[80],"monophyletic":[81],"consistent":[83],"with":[84,94],"genera":[85],"proposed":[86],"ICTV":[89],"nomenclature,":[90],"as":[91,93,144],"well":[92],"current":[96],"tendency":[97],"classify":[99],"both":[100],"endogenous":[101],"exogenous":[103],"three":[106],"major":[107],"classes":[108],"(I,":[109],"II":[110],"III).":[112],"Our":[113],"inference":[114],"indicates":[115],"that":[116],"all":[117],"protein":[118],"domains":[119],"codified":[120],"agree":[130],"collective":[133],"presentation":[134],"particular":[137],"evolutionary":[138],"history,":[139],"which":[140],"may":[141],"be":[142],"used":[143],"main":[146],"criterion":[147],"differentiate":[149],"their":[150],"molecular":[151,161],"diversity":[152],"comprehensive":[155],"collection":[156],"phylogenies":[158],"profiles":[162],"useful":[163],"identification":[166],"new":[168],"species.":[172],"The":[173],"GyDB":[174],"project":[175],"is":[176],"available":[177],"at":[178],"http://gydb.uv.es.":[179]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":3},{"year":2019,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":5},{"year":2012,"cited_by_count":1}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
