{"id":"https://openalex.org/W2146368849","doi":"https://doi.org/10.1093/nar/gkm427","title":"oPOSSUM: integrated tools for analysis of regulatory motif over-representation","display_name":"oPOSSUM: integrated tools for analysis of regulatory motif over-representation","publication_year":2007,"publication_date":"2007-06-18","ids":{"openalex":"https://openalex.org/W2146368849","doi":"https://doi.org/10.1093/nar/gkm427","mag":"2146368849","pmid":"https://pubmed.ncbi.nlm.nih.gov/17576675"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkm427","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkm427","pdf_url":"https://academic.oup.com/nar/article-pdf/35/suppl_2/W245/16747791/gkm427.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/35/suppl_2/W245/16747791/gkm427.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5110721438","display_name":"Shannan J. Ho Sui","orcid":null},"institutions":[{"id":"https://openalex.org/I4210162161","display_name":"Child and Family Research Institute","ror":"https://ror.org/04yqm9y25","country_code":"CA","type":"facility","lineage":["https://openalex.org/I4210162161"]},{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Shannan J. Ho Sui","raw_affiliation_strings":["Centre for Molecular Medicine and Therapeutics, Child and Family Research Institute, University of British Columbia, Vancouver BC, Canada","Centre for Molecular Medicine and Therapeutics, Child & Family Research Institute, University of British Columbia, Vancouver, BC, Canada"],"affiliations":[{"raw_affiliation_string":"Centre for Molecular Medicine and Therapeutics, Child and Family Research Institute, University of British Columbia, Vancouver BC, Canada","institution_ids":[]},{"raw_affiliation_string":"Centre for Molecular Medicine and Therapeutics, Child & Family Research Institute, University of British Columbia, Vancouver, BC, Canada","institution_ids":["https://openalex.org/I4210162161","https://openalex.org/I141945490"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013186691","display_name":"Debra L. Fulton","orcid":null},"institutions":[{"id":"https://openalex.org/I4210162161","display_name":"Child and Family Research Institute","ror":"https://ror.org/04yqm9y25","country_code":"CA","type":"facility","lineage":["https://openalex.org/I4210162161"]},{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Debra L. Fulton","raw_affiliation_strings":["Centre for Molecular Medicine and Therapeutics, Child and Family Research Institute, 2Genetics Graduate Program and 3Department of Medical Genetics, University of British Columbia, Vancouver BC, Canada"],"affiliations":[{"raw_affiliation_string":"Centre for Molecular Medicine and Therapeutics, Child and Family Research Institute, 2Genetics Graduate Program and 3Department of Medical Genetics, University of British Columbia, Vancouver BC, Canada","institution_ids":["https://openalex.org/I4210162161","https://openalex.org/I141945490"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012024330","display_name":"David J. Arenillas","orcid":"https://orcid.org/0000-0001-8639-3957"},"institutions":[{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]},{"id":"https://openalex.org/I4210162161","display_name":"Child and Family Research Institute","ror":"https://ror.org/04yqm9y25","country_code":"CA","type":"facility","lineage":["https://openalex.org/I4210162161"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"David J. Arenillas","raw_affiliation_strings":["Centre for Molecular Medicine and Therapeutics, Child and Family Research Institute, 2Genetics Graduate Program and 3Department of Medical Genetics, University of British Columbia, Vancouver BC, Canada"],"affiliations":[{"raw_affiliation_string":"Centre for Molecular Medicine and Therapeutics, Child and Family Research Institute, 2Genetics Graduate Program and 3Department of Medical Genetics, University of British Columbia, Vancouver BC, Canada","institution_ids":["https://openalex.org/I4210162161","https://openalex.org/I141945490"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002438145","display_name":"Andrew Tae-Jun Kwon","orcid":"https://orcid.org/0000-0001-5019-8156"},"institutions":[{"id":"https://openalex.org/I4210162161","display_name":"Child and Family Research Institute","ror":"https://ror.org/04yqm9y25","country_code":"CA","type":"facility","lineage":["https://openalex.org/I4210162161"]},{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Andrew T. Kwon","raw_affiliation_strings":["Centre for Molecular Medicine and Therapeutics, Child and Family Research Institute, 2Genetics Graduate Program and 3Department of Medical Genetics, University of British Columbia, Vancouver BC, Canada"],"affiliations":[{"raw_affiliation_string":"Centre for Molecular Medicine and Therapeutics, Child and Family Research Institute, 2Genetics Graduate Program and 3Department of Medical Genetics, University of British Columbia, Vancouver BC, Canada","institution_ids":["https://openalex.org/I4210162161","https://openalex.org/I141945490"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5026664289","display_name":"Wyeth W. Wasserman","orcid":"https://orcid.org/0000-0001-6098-6412"},"institutions":[{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]},{"id":"https://openalex.org/I4210162161","display_name":"Child and Family Research Institute","ror":"https://ror.org/04yqm9y25","country_code":"CA","type":"facility","lineage":["https://openalex.org/I4210162161"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Wyeth W. Wasserman","raw_affiliation_strings":["Centre for Molecular Medicine and Therapeutics, Child and Family Research Institute, 2Genetics Graduate Program and 3Department of Medical Genetics, University of British Columbia, Vancouver BC, Canada"],"affiliations":[{"raw_affiliation_string":"Centre for Molecular Medicine and Therapeutics, Child and Family Research Institute, 2Genetics Graduate Program and 3Department of Medical Genetics, University of British Columbia, Vancouver BC, Canada","institution_ids":["https://openalex.org/I4210162161","https://openalex.org/I141945490"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5110721438"],"corresponding_institution_ids":["https://openalex.org/I141945490","https://openalex.org/I4210162161"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":4.6845,"has_fulltext":false,"cited_by_count":163,"citation_normalized_percentile":{"value":0.95872773,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"35","issue":"suppl_2","first_page":"W245","last_page":"W252"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9940999746322632,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.9139627814292908},{"id":"https://openalex.org/keywords/opossum","display_name":"Opossum","score":0.9126996994018555},{"id":"https://openalex.org/keywords/caenorhabditis-elegans","display_name":"Caenorhabditis elegans","score":0.7698162794113159},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.6201802492141724},{"id":"https://openalex.org/keywords/transcription-factor","display_name":"Transcription factor","score":0.6036979556083679},{"id":"https://openalex.org/keywords/dna-binding-site","display_name":"DNA binding site","score":0.5977087616920471},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.5888334512710571},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.558280885219574},{"id":"https://openalex.org/keywords/binding-site","display_name":"Binding site","score":0.5303186774253845},{"id":"https://openalex.org/keywords/promoter","display_name":"Promoter","score":0.48572593927383423},{"id":"https://openalex.org/keywords/caenorhabditis","display_name":"Caenorhabditis","score":0.4799897372722626},{"id":"https://openalex.org/keywords/saccharomyces-cerevisiae","display_name":"Saccharomyces cerevisiae","score":0.4791909456253052},{"id":"https://openalex.org/keywords/sequence-analysis","display_name":"Sequence analysis","score":0.43279531598091125},{"id":"https://openalex.org/keywords/motif","display_name":"Motif (music)","score":0.4258873462677002},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.17840614914894104},{"id":"https://openalex.org/keywords/anatomy","display_name":"Anatomy","score":0.0635308027267456}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.9139627814292908},{"id":"https://openalex.org/C2780837108","wikidata":"https://www.wikidata.org/wiki/Q21834","display_name":"Opossum","level":2,"score":0.9126996994018555},{"id":"https://openalex.org/C2778944004","wikidata":"https://www.wikidata.org/wiki/Q91703","display_name":"Caenorhabditis elegans","level":3,"score":0.7698162794113159},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.6201802492141724},{"id":"https://openalex.org/C86339819","wikidata":"https://www.wikidata.org/wiki/Q407384","display_name":"Transcription factor","level":3,"score":0.6036979556083679},{"id":"https://openalex.org/C3662595","wikidata":"https://www.wikidata.org/wiki/Q5205743","display_name":"DNA binding site","level":5,"score":0.5977087616920471},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5888334512710571},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.558280885219574},{"id":"https://openalex.org/C107824862","wikidata":"https://www.wikidata.org/wiki/Q616005","display_name":"Binding site","level":2,"score":0.5303186774253845},{"id":"https://openalex.org/C101762097","wikidata":"https://www.wikidata.org/wiki/Q224093","display_name":"Promoter","level":4,"score":0.48572593927383423},{"id":"https://openalex.org/C2776496032","wikidata":"https://www.wikidata.org/wiki/Q1904768","display_name":"Caenorhabditis","level":4,"score":0.4799897372722626},{"id":"https://openalex.org/C2777576037","wikidata":"https://www.wikidata.org/wiki/Q719725","display_name":"Saccharomyces cerevisiae","level":3,"score":0.4791909456253052},{"id":"https://openalex.org/C61053724","wikidata":"https://www.wikidata.org/wiki/Q1154615","display_name":"Sequence analysis","level":3,"score":0.43279531598091125},{"id":"https://openalex.org/C32276052","wikidata":"https://www.wikidata.org/wiki/Q908349","display_name":"Motif (music)","level":2,"score":0.4258873462677002},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.17840614914894104},{"id":"https://openalex.org/C105702510","wikidata":"https://www.wikidata.org/wiki/Q514","display_name":"Anatomy","level":1,"score":0.0635308027267456},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C24890656","wikidata":"https://www.wikidata.org/wiki/Q82811","display_name":"Acoustics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011401","descriptor_name":"Promoter Regions, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011401","descriptor_name":"Promoter Regions, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011401","descriptor_name":"Promoter Regions, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011401","descriptor_name":"Promoter Regions, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D016328","descriptor_name":"NF-kappa B","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D016328","descriptor_name":"NF-kappa B","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D016328","descriptor_name":"NF-kappa B","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D016328","descriptor_name":"NF-kappa B","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D017173","descriptor_name":"Caenorhabditis elegans","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017173","descriptor_name":"Caenorhabditis elegans","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017173","descriptor_name":"Caenorhabditis elegans","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017173","descriptor_name":"Caenorhabditis elegans","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gkm427","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkm427","pdf_url":"https://academic.oup.com/nar/article-pdf/35/suppl_2/W245/16747791/gkm427.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:17576675","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17576675","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:1933229","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/1933229","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkm427","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkm427","pdf_url":"https://academic.oup.com/nar/article-pdf/35/suppl_2/W245/16747791/gkm427.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2146368849.pdf","grobid_xml":"https://content.openalex.org/works/W2146368849.grobid-xml"},"referenced_works_count":33,"referenced_works":["https://openalex.org/W1970282394","https://openalex.org/W1972857806","https://openalex.org/W1976998737","https://openalex.org/W2018901423","https://openalex.org/W2023162706","https://openalex.org/W2025289680","https://openalex.org/W2027662098","https://openalex.org/W2032117740","https://openalex.org/W2033352293","https://openalex.org/W2034091087","https://openalex.org/W2041476574","https://openalex.org/W2057998009","https://openalex.org/W2064384066","https://openalex.org/W2068011423","https://openalex.org/W2080204223","https://openalex.org/W2082881281","https://openalex.org/W2084620487","https://openalex.org/W2090255118","https://openalex.org/W2106848313","https://openalex.org/W2109745159","https://openalex.org/W2110396486","https://openalex.org/W2113833510","https://openalex.org/W2129293106","https://openalex.org/W2130527936","https://openalex.org/W2131581981","https://openalex.org/W2135000328","https://openalex.org/W2137464714","https://openalex.org/W2154447604","https://openalex.org/W2162891889","https://openalex.org/W2171024087","https://openalex.org/W4212987372","https://openalex.org/W4245106190","https://openalex.org/W6660723967"],"related_works":["https://openalex.org/W4385516583","https://openalex.org/W2276115873","https://openalex.org/W2345399109","https://openalex.org/W4313474347","https://openalex.org/W2111599449","https://openalex.org/W2145924285","https://openalex.org/W4286855404","https://openalex.org/W4210410370","https://openalex.org/W2562084017","https://openalex.org/W2079040627"],"abstract_inverted_index":{"The":[0,75,126],"identification":[1],"of":[2,10,18,31,68,71,90,99,102],"over-represented":[3,100],"transcription":[4,127],"factor":[5,128],"binding":[6,50,129],"sites":[7,51],"from":[8,139],"sets":[9,70,122],"co-expressed":[11,69],"genes":[12],"provides":[13],"insights":[14],"into":[15],"the":[16,66,88,97,113,140],"mechanisms":[17],"regulation":[19],"for":[20,28,48,65,96],"diverse":[21],"biological":[22],"contexts.":[23],"oPOSSUM,":[24],"an":[25],"internet-based":[26],"system":[27],"such":[29],"studies":[30],"regulation,":[32],"has":[33,109],"been":[34,110,133],"improved":[35],"and":[36,56,77,87,106],"expanded":[37],"in":[38,82,104],"this":[39],"new":[40,137],"release.":[41],"New":[42],"features":[43],"include":[44,136],"a":[45,62],"worm-specific":[46],"version":[47,64],"investigating":[49],"conserved":[52],"between":[53],"Caenorhabditis":[54],"elegans":[55],"C.":[57],"briggsae,":[58],"as":[59,61],"well":[60],"yeast-specific":[63],"analysis":[67,98],"Saccharomyces":[72],"cerevisiae":[73],"genes.":[74],"human":[76,105],"mouse":[78,107],"applications":[79],"feature":[80],"improvements":[81],"ortholog":[83],"mapping,":[84],"sequence":[85],"alignments":[86],"delineation":[89],"multiple":[91],"alternative":[92],"promoters.":[93],"oPOSSUM2,":[94],"introduced":[95],"combinations":[101],"motifs":[103],"genes,":[108],"integrated":[111],"with":[112],"original":[114],"oPOSSUM":[115,143],"system.":[116],"Analysis":[117],"using":[118],"user-defined":[119],"background":[120],"gene":[121],"is":[123,144],"now":[124],"supported.":[125],"site":[130],"models":[131],"have":[132],"updated":[134],"to":[135],"profiles":[138],"JASPAR":[141],"database.":[142],"available":[145],"at":[146],"http://www.cisreg.ca/oPOSSUM/":[147]},"counts_by_year":[{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":7},{"year":2021,"cited_by_count":8},{"year":2020,"cited_by_count":10},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":5},{"year":2016,"cited_by_count":12},{"year":2015,"cited_by_count":13},{"year":2014,"cited_by_count":13},{"year":2013,"cited_by_count":12},{"year":2012,"cited_by_count":19}],"updated_date":"2026-03-10T16:38:18.471706","created_date":"2016-06-24T00:00:00"}