{"id":"https://openalex.org/W2146368849","doi":"https://doi.org/10.1093/nar/gkm427","title":"oPOSSUM: integrated tools for analysis of regulatory motif over-representation","display_name":"oPOSSUM: integrated tools for analysis of regulatory motif over-representation","publication_year":2007,"publication_date":"2007-06-18","ids":{"openalex":"https://openalex.org/W2146368849","doi":"https://doi.org/10.1093/nar/gkm427","mag":"2146368849","pmid":"https://pubmed.ncbi.nlm.nih.gov/17576675"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkm427","doi":"https://doi.org/10.1093/nar/gkm427","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkm427","pdf_url":"https://academic.oup.com/nar/article-pdf/35/suppl_2/W245/16747791/gkm427.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-scientific","cwts-core","doaj","dongbi-a","doyens","jufo-3","ki-jl-3","medline","norway-2","poland-200","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"volume":null,"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/35/suppl_2/W245/16747791/gkm427.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5110721438","display_name":"Shannan J. Ho Sui","orcid":"https://orcid.org/0000-0002-6191-4709","observed_orcids":["https://orcid.org/0000-0002-6191-4709"]},"institutions":[{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]},{"id":"https://openalex.org/I4210162161","display_name":"Child and Family Research Institute","ror":"https://ror.org/04yqm9y25","country_code":"CA","type":"facility","lineage":["https://openalex.org/I4210162161"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Shannan J. Ho Sui","raw_affiliation_strings":["Centre for Molecular Medicine and Therapeutics, Child and Family Research Institute, University of British Columbia, Vancouver BC, Canada","Centre for Molecular Medicine and Therapeutics, Child & Family Research Institute, University of British Columbia, Vancouver, BC, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Molecular Medicine and Therapeutics, Child and Family Research Institute, University of British Columbia, Vancouver BC, Canada","institution_ids":["https://openalex.org/I141945490","https://openalex.org/I4210162161"]},{"raw_affiliation_string":"Centre for Molecular Medicine and Therapeutics, Child & Family Research Institute, University of British Columbia, Vancouver, BC, Canada","institution_ids":["https://openalex.org/I141945490","https://openalex.org/I4210162161"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013186691","display_name":"Debra L. Fulton","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]},{"id":"https://openalex.org/I4210162161","display_name":"Child and Family Research Institute","ror":"https://ror.org/04yqm9y25","country_code":"CA","type":"facility","lineage":["https://openalex.org/I4210162161"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Debra L. Fulton","raw_affiliation_strings":["Centre for Molecular Medicine and Therapeutics, Child and Family Research Institute, 2 Genetics Graduate Program and 3 Department of Medical Genetics, University of British Columbia, Vancouver BC, Canada","Centre for Molecular Medicine and Therapeutics, Child and Family Research Institute, 2Genetics Graduate Program and 3Department of Medical Genetics, University of British Columbia, Vancouver BC, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Molecular Medicine and Therapeutics, Child and Family Research Institute, 2 Genetics Graduate Program and 3 Department of Medical Genetics, University of British Columbia, Vancouver BC, Canada","institution_ids":["https://openalex.org/I141945490","https://openalex.org/I4210162161"]},{"raw_affiliation_string":"Centre for Molecular Medicine and Therapeutics, Child and Family Research Institute, 2Genetics Graduate Program and 3Department of Medical Genetics, University of British Columbia, Vancouver BC, Canada","institution_ids":["https://openalex.org/I141945490","https://openalex.org/I4210162161"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012024330","display_name":"David J. Arenillas","orcid":"https://orcid.org/0000-0001-8639-3957","observed_orcids":["https://orcid.org/0000-0001-8639-3957"]},"institutions":[{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]},{"id":"https://openalex.org/I4210162161","display_name":"Child and Family Research Institute","ror":"https://ror.org/04yqm9y25","country_code":"CA","type":"facility","lineage":["https://openalex.org/I4210162161"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"David J. Arenillas","raw_affiliation_strings":["Centre for Molecular Medicine and Therapeutics, Child and Family Research Institute, 2 Genetics Graduate Program and 3 Department of Medical Genetics, University of British Columbia, Vancouver BC, Canada","Centre for Molecular Medicine and Therapeutics, Child and Family Research Institute, 2Genetics Graduate Program and 3Department of Medical Genetics, University of British Columbia, Vancouver BC, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Molecular Medicine and Therapeutics, Child and Family Research Institute, 2 Genetics Graduate Program and 3 Department of Medical Genetics, University of British Columbia, Vancouver BC, Canada","institution_ids":["https://openalex.org/I141945490","https://openalex.org/I4210162161"]},{"raw_affiliation_string":"Centre for Molecular Medicine and Therapeutics, Child and Family Research Institute, 2Genetics Graduate Program and 3Department of Medical Genetics, University of British Columbia, Vancouver BC, Canada","institution_ids":["https://openalex.org/I141945490","https://openalex.org/I4210162161"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002438145","display_name":"Andrew Tae-Jun Kwon","orcid":"https://orcid.org/0000-0001-5019-8156","observed_orcids":["https://orcid.org/0000-0001-5019-8156"]},"institutions":[{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]},{"id":"https://openalex.org/I4210162161","display_name":"Child and Family Research Institute","ror":"https://ror.org/04yqm9y25","country_code":"CA","type":"facility","lineage":["https://openalex.org/I4210162161"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Andrew T. Kwon","raw_affiliation_strings":["Centre for Molecular Medicine and Therapeutics, Child and Family Research Institute, 2 Genetics Graduate Program and 3 Department of Medical Genetics, University of British Columbia, Vancouver BC, Canada","Centre for Molecular Medicine and Therapeutics, Child and Family Research Institute, 2Genetics Graduate Program and 3Department of Medical Genetics, University of British Columbia, Vancouver BC, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Molecular Medicine and Therapeutics, Child and Family Research Institute, 2 Genetics Graduate Program and 3 Department of Medical Genetics, University of British Columbia, Vancouver BC, Canada","institution_ids":["https://openalex.org/I141945490","https://openalex.org/I4210162161"]},{"raw_affiliation_string":"Centre for Molecular Medicine and Therapeutics, Child and Family Research Institute, 2Genetics Graduate Program and 3Department of Medical Genetics, University of British Columbia, Vancouver BC, Canada","institution_ids":["https://openalex.org/I141945490","https://openalex.org/I4210162161"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5026664289","display_name":"Wyeth W. Wasserman","orcid":"https://orcid.org/0000-0001-6098-6412","observed_orcids":["https://orcid.org/0000-0001-6098-6412"]},"institutions":[{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]},{"id":"https://openalex.org/I4210162161","display_name":"Child and Family Research Institute","ror":"https://ror.org/04yqm9y25","country_code":"CA","type":"facility","lineage":["https://openalex.org/I4210162161"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Wyeth W. Wasserman","raw_affiliation_strings":["Centre for Molecular Medicine and Therapeutics, Child and Family Research Institute, 2 Genetics Graduate Program and 3 Department of Medical Genetics, University of British Columbia, Vancouver BC, Canada","Centre for Molecular Medicine and Therapeutics, Child and Family Research Institute, 2Genetics Graduate Program and 3Department of Medical Genetics, University of British Columbia, Vancouver BC, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Molecular Medicine and Therapeutics, Child and Family Research Institute, 2 Genetics Graduate Program and 3 Department of Medical Genetics, University of British Columbia, Vancouver BC, Canada","institution_ids":["https://openalex.org/I141945490","https://openalex.org/I4210162161"]},{"raw_affiliation_string":"Centre for Molecular Medicine and Therapeutics, Child and Family Research Institute, 2Genetics Graduate Program and 3Department of Medical Genetics, University of British Columbia, Vancouver BC, Canada","institution_ids":["https://openalex.org/I141945490","https://openalex.org/I4210162161"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5026664289"],"corresponding_institution_ids":["https://openalex.org/I141945490","https://openalex.org/I4210162161"],"apc_list":{"value":3992,"currency":"USD","value_usd":3992},"apc_paid":{"value":3992,"currency":"USD","value_usd":3992},"fwci":4.1967,"has_fulltext":true,"cited_by_count":161,"citation_normalized_percentile":{"value":0.95426272,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":93,"max":100},"biblio":{"volume":"35","issue":"suppl_2","first_page":"W245","last_page":"W252"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9789999723434448,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9789999723434448,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.009800000116229057,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.003000000026077032,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/opossum","display_name":"Didelphidae","score":0.8679999709129333},{"id":"https://openalex.org/keywords/transcription-factor-binding-sites","display_name":"transcription factor binding sites","score":0.9229999780654907},{"id":"https://openalex.org/keywords/co-expressed-genes","display_name":"co-expressed genes","score":0.8740000128746033},{"id":"https://openalex.org/keywords/gene-expression-regulation","display_name":"gene expression regulation","score":0.5479999780654907},{"id":"https://openalex.org/keywords/caenorhabditis-elegans","display_name":"Caenorhabditis elegans","score":0.9010000228881836},{"id":"https://openalex.org/keywords/caenorhabditis-briggsae","display_name":"Caenorhabditis briggsae","score":0.9990000128746033},{"id":"https://openalex.org/keywords/saccharomyces-cerevisiae","display_name":"Saccharomyces cerevisiae","score":0.9950000047683716},{"id":"https://openalex.org/keywords/ortholog-mapping","display_name":"ortholog mapping","score":0.9110000133514404},{"id":"https://openalex.org/keywords/alternative-promoter-usage","display_name":"alternative promoters","score":0.972000002861023},{"id":"https://openalex.org/keywords/web-based-analysis-tool","display_name":"web-based analysis tool","score":0.503000020980835}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.9139627814292908},{"id":"https://openalex.org/C2780837108","wikidata":"https://www.wikidata.org/wiki/Q21834","display_name":"Opossum","level":2,"score":0.9126996994018555},{"id":"https://openalex.org/C2778944004","wikidata":"https://www.wikidata.org/wiki/Q91703","display_name":"Caenorhabditis elegans","level":3,"score":0.7698162794113159},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.6201802492141724},{"id":"https://openalex.org/C86339819","wikidata":"https://www.wikidata.org/wiki/Q407384","display_name":"Transcription factor","level":3,"score":0.6036979556083679},{"id":"https://openalex.org/C3662595","wikidata":"https://www.wikidata.org/wiki/Q5205743","display_name":"DNA binding site","level":5,"score":0.5977087616920471},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5888334512710571},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.558280885219574},{"id":"https://openalex.org/C107824862","wikidata":"https://www.wikidata.org/wiki/Q616005","display_name":"Binding site","level":2,"score":0.5303186774253845},{"id":"https://openalex.org/C101762097","wikidata":"https://www.wikidata.org/wiki/Q224093","display_name":"Promoter","level":4,"score":0.48572593927383423},{"id":"https://openalex.org/C2776496032","wikidata":"https://www.wikidata.org/wiki/Q1904768","display_name":"Caenorhabditis","level":4,"score":0.4799897372722626},{"id":"https://openalex.org/C2777576037","wikidata":"https://www.wikidata.org/wiki/Q719725","display_name":"Saccharomyces cerevisiae","level":3,"score":0.4791909456253052},{"id":"https://openalex.org/C61053724","wikidata":"https://www.wikidata.org/wiki/Q1154615","display_name":"Sequence analysis","level":3,"score":0.43279531598091125},{"id":"https://openalex.org/C32276052","wikidata":"https://www.wikidata.org/wiki/Q908349","display_name":"Motif (music)","level":2,"score":0.4258873462677002},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.17840614914894104},{"id":"https://openalex.org/C105702510","wikidata":"https://www.wikidata.org/wiki/Q514","display_name":"Anatomy","level":1,"score":0.0635308027267456},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C24890656","wikidata":"https://www.wikidata.org/wiki/Q82811","display_name":"Acoustics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011401","descriptor_name":"Promoter Regions, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011401","descriptor_name":"Promoter Regions, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011401","descriptor_name":"Promoter Regions, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011401","descriptor_name":"Promoter Regions, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D016328","descriptor_name":"NF-kappa B","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D016328","descriptor_name":"NF-kappa B","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D016328","descriptor_name":"NF-kappa B","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D016328","descriptor_name":"NF-kappa B","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D017173","descriptor_name":"Caenorhabditis elegans","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017173","descriptor_name":"Caenorhabditis elegans","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017173","descriptor_name":"Caenorhabditis elegans","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017173","descriptor_name":"Caenorhabditis elegans","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gkm427","doi":"https://doi.org/10.1093/nar/gkm427","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkm427","pdf_url":"https://academic.oup.com/nar/article-pdf/35/suppl_2/W245/16747791/gkm427.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-scientific","cwts-core","doaj","dongbi-a","doyens","jufo-3","ki-jl-3","medline","norway-2","poland-200","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:17576675","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17576675","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:1933229","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/1933229","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkm427","doi":"https://doi.org/10.1093/nar/gkm427","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkm427","pdf_url":"https://academic.oup.com/nar/article-pdf/35/suppl_2/W245/16747791/gkm427.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-scientific","cwts-core","doaj","dongbi-a","doyens","jufo-3","ki-jl-3","medline","norway-2","poland-200","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"sustainable_development_goals_aurora":[],"study_designs":[],"awards":[{"id":"https://openalex.org/G2068928830","display_name":null,"funder_award_id":"69153","funder_id":"https://openalex.org/F4320334506","funder_display_name":"Canadian Institutes of Health Research"},{"id":"https://openalex.org/G6587413448","display_name":null,"funder_award_id":"64231","funder_id":"https://openalex.org/F4320334506","funder_display_name":"Canadian Institutes of Health Research"}],"funders":[{"id":"https://openalex.org/F4320319965","display_name":"Michael Smith Health Research BC","ror":"https://ror.org/020x39229"},{"id":"https://openalex.org/F4320320290","display_name":"University of Oxford","ror":"https://ror.org/052gg0110"},{"id":"https://openalex.org/F4320334506","display_name":"Canadian Institutes of Health Research","ror":"https://ror.org/01gavpb45"},{"id":"https://openalex.org/F4320334593","display_name":"Natural Sciences and Engineering Research Council of Canada","ror":"https://ror.org/01h531d29"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2146368849.pdf","grobid_xml":"https://content.openalex.org/works/W2146368849.grobid-xml"},"referenced_works_count":33,"referenced_works":["https://openalex.org/W1970282394","https://openalex.org/W1972857806","https://openalex.org/W1976998737","https://openalex.org/W2018901423","https://openalex.org/W2023162706","https://openalex.org/W2025289680","https://openalex.org/W2027662098","https://openalex.org/W2032117740","https://openalex.org/W2033352293","https://openalex.org/W2034091087","https://openalex.org/W2041476574","https://openalex.org/W2057998009","https://openalex.org/W2064384066","https://openalex.org/W2068011423","https://openalex.org/W2080204223","https://openalex.org/W2082881281","https://openalex.org/W2084620487","https://openalex.org/W2090255118","https://openalex.org/W2106848313","https://openalex.org/W2109745159","https://openalex.org/W2110396486","https://openalex.org/W2113833510","https://openalex.org/W2129293106","https://openalex.org/W2130527936","https://openalex.org/W2131581981","https://openalex.org/W2135000328","https://openalex.org/W2137464714","https://openalex.org/W2154447604","https://openalex.org/W2162891889","https://openalex.org/W2171024087","https://openalex.org/W4212987372","https://openalex.org/W4245106190","https://openalex.org/W6660723967"],"related_works":["https://openalex.org/W4385516583","https://openalex.org/W2276115873","https://openalex.org/W2345399109","https://openalex.org/W4313474347","https://openalex.org/W2111599449","https://openalex.org/W2145924285","https://openalex.org/W4286855404","https://openalex.org/W4210410370","https://openalex.org/W2562084017","https://openalex.org/W2079040627"],"abstract_inverted_index":{"The":[0,75,126],"identification":[1],"of":[2,10,18,31,68,71,90,99,102],"over-represented":[3,100],"transcription":[4,127],"factor":[5,128],"binding":[6,50,129],"sites":[7,51],"from":[8,139],"sets":[9,70,122],"co-expressed":[11,69],"genes":[12],"provides":[13],"insights":[14],"into":[15],"the":[16,66,88,97,113,140],"mechanisms":[17],"regulation":[19],"for":[20,28,48,65,96],"diverse":[21],"biological":[22],"contexts.":[23],"oPOSSUM,":[24],"an":[25],"internet-based":[26],"system":[27],"such":[29],"studies":[30],"regulation,":[32],"has":[33,109],"been":[34,110,133],"improved":[35],"and":[36,56,77,87,106],"expanded":[37],"in":[38,82,104],"this":[39],"new":[40,137],"release.":[41],"New":[42],"features":[43],"include":[44,136],"a":[45,62],"worm-specific":[46],"version":[47,64],"investigating":[49],"conserved":[52],"between":[53],"Caenorhabditis":[54],"elegans":[55],"C.":[57],"briggsae,":[58],"as":[59,61],"well":[60],"yeast-specific":[63],"analysis":[67,98],"Saccharomyces":[72],"cerevisiae":[73],"genes.":[74],"human":[76,105],"mouse":[78,107],"applications":[79],"feature":[80],"improvements":[81],"ortholog":[83],"mapping,":[84],"sequence":[85],"alignments":[86],"delineation":[89],"multiple":[91],"alternative":[92],"promoters.":[93],"oPOSSUM2,":[94],"introduced":[95],"combinations":[101],"motifs":[103],"genes,":[108],"integrated":[111],"with":[112],"original":[114],"oPOSSUM":[115,143],"system.":[116],"Analysis":[117],"using":[118],"user-defined":[119],"background":[120],"gene":[121],"is":[123,144],"now":[124],"supported.":[125],"site":[130],"models":[131],"have":[132],"updated":[134],"to":[135],"profiles":[138],"JASPAR":[141],"database.":[142],"available":[145],"at":[146],"http://www.cisreg.ca/oPOSSUM/":[147]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":7},{"year":2021,"cited_by_count":7},{"year":2020,"cited_by_count":10},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":5},{"year":2016,"cited_by_count":11},{"year":2015,"cited_by_count":13},{"year":2014,"cited_by_count":13},{"year":2013,"cited_by_count":12},{"year":2012,"cited_by_count":19}],"updated_date":"2026-10-08T09:06:37.294493","created_date":"2016-06-24T00:00:00"}
