{"id":"https://openalex.org/W2097617881","doi":"https://doi.org/10.1093/nar/gkm407","title":"SplicePort--An interactive splice-site analysis tool","display_name":"SplicePort--An interactive splice-site analysis tool","publication_year":2007,"publication_date":"2007-05-08","ids":{"openalex":"https://openalex.org/W2097617881","doi":"https://doi.org/10.1093/nar/gkm407","mag":"2097617881","pmid":"https://pubmed.ncbi.nlm.nih.gov/17576680"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkm407","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkm407","pdf_url":"https://academic.oup.com/nar/article-pdf/35/suppl_2/W285/9587441/gkm407.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/35/suppl_2/W285/9587441/gkm407.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"R. I. Dogan","orcid":null},"institutions":[{"id":"https://openalex.org/I66946132","display_name":"University of Maryland, College Park","ror":"https://ror.org/047s2c258","country_code":"US","type":"education","lineage":["https://openalex.org/I66946132"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"R. I. Dogan","raw_affiliation_strings":["Computer Science Department, University of Maryland, College Park, Maryland 20742, USA. rezarta@cs.umd.edu","University of Maryland, College Park, College Park, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Science Department, University of Maryland, College Park, Maryland 20742, USA. rezarta@cs.umd.edu","institution_ids":["https://openalex.org/I66946132"]},{"raw_affiliation_string":"University of Maryland, College Park, College Park, United States","institution_ids":["https://openalex.org/I66946132"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086169451","display_name":"Lise Getoor","orcid":null},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]},{"id":"https://openalex.org/I66946132","display_name":"University of Maryland, College Park","ror":"https://ror.org/047s2c258","country_code":"US","type":"education","lineage":["https://openalex.org/I66946132"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"L. Getoor","raw_affiliation_strings":["Computer Science Department, University of Maryland, College Park, Maryland, 20742, 2National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, Maryland, 20894, 3Department of Cell Biology and Molecular Genetics and 4Center for Bioinformatics and Computational Biology, University of Maryland, College Park, Maryland 20742, USA","University of Maryland, College Park, College Park, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Science Department, University of Maryland, College Park, Maryland, 20742, 2National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, Maryland, 20894, 3Department of Cell Biology and Molecular Genetics and 4Center for Bioinformatics and Computational Biology, University of Maryland, College Park, Maryland 20742, USA","institution_ids":["https://openalex.org/I4210109390","https://openalex.org/I1299303238","https://openalex.org/I66946132"]},{"raw_affiliation_string":"University of Maryland, College Park, College Park, United States","institution_ids":["https://openalex.org/I66946132"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111895206","display_name":"W. John Wilbur","orcid":null},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]},{"id":"https://openalex.org/I66946132","display_name":"University of Maryland, College Park","ror":"https://ror.org/047s2c258","country_code":"US","type":"education","lineage":["https://openalex.org/I66946132"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"W. J. Wilbur","raw_affiliation_strings":["Computer Science Department, University of Maryland, College Park, Maryland, 20742, 2National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, Maryland, 20894, 3Department of Cell Biology and Molecular Genetics and 4Center for Bioinformatics and Computational Biology, University of Maryland, College Park, Maryland 20742, USA","University of Maryland, College Park, College Park, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Science Department, University of Maryland, College Park, Maryland, 20742, 2National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, Maryland, 20894, 3Department of Cell Biology and Molecular Genetics and 4Center for Bioinformatics and Computational Biology, University of Maryland, College Park, Maryland 20742, USA","institution_ids":["https://openalex.org/I4210109390","https://openalex.org/I1299303238","https://openalex.org/I66946132"]},{"raw_affiliation_string":"University of Maryland, College Park, College Park, United States","institution_ids":["https://openalex.org/I66946132"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5040594310","display_name":"Stephen M. Mount","orcid":"https://orcid.org/0000-0003-2748-8205"},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]},{"id":"https://openalex.org/I66946132","display_name":"University of Maryland, College Park","ror":"https://ror.org/047s2c258","country_code":"US","type":"education","lineage":["https://openalex.org/I66946132"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"S. M. Mount","raw_affiliation_strings":["Computer Science Department, University of Maryland, College Park, Maryland, 20742, 2National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, Maryland, 20894, 3Department of Cell Biology and Molecular Genetics and 4Center for Bioinformatics and Computational Biology, University of Maryland, College Park, Maryland 20742, USA","University of Maryland, College Park, College Park, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Science Department, University of Maryland, College Park, Maryland, 20742, 2National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, Maryland, 20894, 3Department of Cell Biology and Molecular Genetics and 4Center for Bioinformatics and Computational Biology, University of Maryland, College Park, Maryland 20742, USA","institution_ids":["https://openalex.org/I4210109390","https://openalex.org/I1299303238","https://openalex.org/I66946132"]},{"raw_affiliation_string":"University of Maryland, College Park, College Park, United States","institution_ids":["https://openalex.org/I66946132"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I66946132"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":3.2289,"has_fulltext":false,"cited_by_count":215,"citation_normalized_percentile":{"value":0.92484407,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":95,"max":100},"biblio":{"volume":"35","issue":"Web Server","first_page":"W285","last_page":"W291"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.996399998664856,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/splice","display_name":"splice","score":0.8396787643432617},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.6071062088012695},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5736886262893677},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.4935976266860962},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.47306692600250244},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.4573367238044739},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4522770047187805},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.44166266918182373},{"id":"https://openalex.org/keywords/feature-selection","display_name":"Feature selection","score":0.42458999156951904},{"id":"https://openalex.org/keywords/user-interface","display_name":"User interface","score":0.42286115884780884},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.37406694889068604},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.36055392026901245},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3562270402908325},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3502327799797058},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3005134165287018},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.2659904956817627},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.18927642703056335},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.09897956252098083}],"concepts":[{"id":"https://openalex.org/C2780989783","wikidata":"https://www.wikidata.org/wiki/Q7578557","display_name":"splice","level":3,"score":0.8396787643432617},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.6071062088012695},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5736886262893677},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.4935976266860962},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.47306692600250244},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.4573367238044739},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4522770047187805},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.44166266918182373},{"id":"https://openalex.org/C148483581","wikidata":"https://www.wikidata.org/wiki/Q446488","display_name":"Feature selection","level":2,"score":0.42458999156951904},{"id":"https://openalex.org/C89505385","wikidata":"https://www.wikidata.org/wiki/Q47146","display_name":"User interface","level":2,"score":0.42286115884780884},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.37406694889068604},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.36055392026901245},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3562270402908325},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3502327799797058},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3005134165287018},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.2659904956817627},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.18927642703056335},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.09897956252098083},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D022821","descriptor_name":"RNA Splice Sites","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D022821","descriptor_name":"RNA Splice Sites","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D022821","descriptor_name":"RNA Splice Sites","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gkm407","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkm407","pdf_url":"https://academic.oup.com/nar/article-pdf/35/suppl_2/W285/9587441/gkm407.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:17576680","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17576680","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.98.4945","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.98.4945","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/cgi/reprint/gkm407v1.pdf","raw_type":"text"},{"id":"pmh:oai:pubmedcentral.nih.gov:1933122","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/1933122","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkm407","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkm407","pdf_url":"https://academic.oup.com/nar/article-pdf/35/suppl_2/W285/9587441/gkm407.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320332382","display_name":"Oak Ridge Institute for Science and Education","ror":"https://ror.org/0526p1y61"},{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2097617881.pdf"},"referenced_works_count":17,"referenced_works":["https://openalex.org/W1524688041","https://openalex.org/W1532556888","https://openalex.org/W1913751664","https://openalex.org/W1975687045","https://openalex.org/W2013235753","https://openalex.org/W2014181394","https://openalex.org/W2034691490","https://openalex.org/W2038921819","https://openalex.org/W2090335524","https://openalex.org/W2110400205","https://openalex.org/W2113099049","https://openalex.org/W2129682060","https://openalex.org/W2130395351","https://openalex.org/W2144885757","https://openalex.org/W2158266834","https://openalex.org/W2166960413","https://openalex.org/W2914218031"],"related_works":["https://openalex.org/W2029220916","https://openalex.org/W2274928342","https://openalex.org/W1552032432","https://openalex.org/W1505791290","https://openalex.org/W3007430196","https://openalex.org/W2032059901","https://openalex.org/W2345230016","https://openalex.org/W2008389025","https://openalex.org/W2134451695","https://openalex.org/W2027970165"],"abstract_inverted_index":{"SplicePort":[0,162],"is":[1,52],"a":[2,102],"web-based":[3],"tool":[4],"for":[5,16,54,67,98,136,151],"splice-site":[6,14,91],"analysis":[7],"that":[8,31,96],"allows":[9],"the":[10,21,26,59,80,94,99,107,143],"user":[11,22,81,123,140],"to":[12,64],"make":[13],"predictions":[15],"submitted":[17],"sequences.":[18],"In":[19],"addition,":[20],"can":[23,82,115,124,133,141,156,165],"also":[24],"browse":[25,142],"rich":[27],"catalog":[28],"of":[29,41,87,101,110],"features":[30,61,88,95,126],"underlies":[32],"these":[33],"predictions,":[34],"and":[35,77,84,129,146,170],"which":[36],"we":[37],"have":[38],"found":[39],"capable":[40],"providing":[42],"high":[43],"classification":[44,100],"accuracy":[45],"on":[46],"human":[47,55],"splice":[48,56],"sites.":[49],"Feature":[50],"selection":[51],"optimized":[53],"sites,":[57],"but":[58],"selected":[60],"are":[62],"likely":[63],"be":[65,116,134,166],"predictive":[66],"other":[68],"mammals":[69],"as":[70],"well.":[71],"With":[72],"our":[73],"interactive":[74],"feature":[75,113],"browsing":[76],"visualization":[78],"tool,":[79],"view":[83],"explore":[85],"subsets":[86],"used":[89],"in":[90],"prediction":[92],"(either":[93],"account":[97],"specific":[103],"input":[104],"sequence":[105],"or":[106,119,155],"complete":[108],"collection":[109],"features).":[111],"Selected":[112],"sets":[114],"searched,":[117],"ranked":[118],"displayed":[120],"easily.":[121],"The":[122,139,161],"group":[125],"into":[127],"clusters":[128,145],"frequency":[130],"plot":[131],"WebLogos":[132],"generated":[135],"each":[137],"cluster.":[138],"identified":[144],"their":[147],"contributing":[148],"elements,":[149],"looking":[150],"new":[152],"interesting":[153],"signals,":[154],"validate":[157],"previously":[158],"observed":[159],"signals.":[160],"web":[163],"server":[164],"accessed":[167],"at":[168],"http://www.cs.umd.edu/projects/SplicePort":[169],"http://www.spliceport.org.":[171]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":7},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":12},{"year":2019,"cited_by_count":14},{"year":2018,"cited_by_count":20},{"year":2017,"cited_by_count":21},{"year":2016,"cited_by_count":12},{"year":2015,"cited_by_count":21},{"year":2014,"cited_by_count":13},{"year":2013,"cited_by_count":21},{"year":2012,"cited_by_count":23}],"updated_date":"2026-05-22T06:13:13.366637","created_date":"2025-10-10T00:00:00"}
