{"id":"https://openalex.org/W2035686342","doi":"https://doi.org/10.1093/nar/gkm364","title":"ProtSweep, 2Dsweep and DomainSweep: protein analysis suite at DKFZ","display_name":"ProtSweep, 2Dsweep and DomainSweep: protein analysis suite at DKFZ","publication_year":2007,"publication_date":"2007-05-08","ids":{"openalex":"https://openalex.org/W2035686342","doi":"https://doi.org/10.1093/nar/gkm364","mag":"2035686342","pmid":"https://pubmed.ncbi.nlm.nih.gov/17526514"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkm364","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkm364","pdf_url":"https://academic.oup.com/nar/article-pdf/35/suppl_2/W444/9585517/gkm364.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/35/suppl_2/W444/9585517/gkm364.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5037940023","display_name":"Coral del Val","orcid":"https://orcid.org/0000-0002-2212-2039"},"institutions":[{"id":"https://openalex.org/I17937529","display_name":"German Cancer Research Center","ror":"https://ror.org/04cdgtt98","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I17937529"]},{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"C. del Val","raw_affiliation_strings":["DKFZ, German Cancer Research Center, Division of Molecular Biophysics, Im Neuenheimer Feld 580, D-69120 Heidelberg, Germany. c.delval@dkfz.de","German Cancer Research Center, Heidelberg, Germany"],"affiliations":[{"raw_affiliation_string":"DKFZ, German Cancer Research Center, Division of Molecular Biophysics, Im Neuenheimer Feld 580, D-69120 Heidelberg, Germany. c.delval@dkfz.de","institution_ids":["https://openalex.org/I17937529","https://openalex.org/I223822909"]},{"raw_affiliation_string":"German Cancer Research Center, Heidelberg, Germany","institution_ids":["https://openalex.org/I17937529","https://openalex.org/I223822909"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102900245","display_name":"Peter B. Ernst","orcid":"https://orcid.org/0000-0001-7777-1813"},"institutions":[{"id":"https://openalex.org/I173304897","display_name":"Universidad de Granada","ror":"https://ror.org/04njjy449","country_code":"ES","type":"education","lineage":["https://openalex.org/I173304897"]},{"id":"https://openalex.org/I17937529","display_name":"German Cancer Research Center","ror":"https://ror.org/04cdgtt98","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I17937529"]},{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]}],"countries":["DE","ES"],"is_corresponding":false,"raw_author_name":"P. Ernst","raw_affiliation_strings":["DKFZ, German Cancer Research Center, Division of Molecular Biophysics, Im Neuenheimer Feld 580, D-69120 Heidelberg, Germany and 2Department of Computer Science and Artificial Intelligence, ETSII University of Granada, C/Daniel Saucedo Aranda s/n 18071, Granada, Spain","German Cancer Research Center, Heidelberg, Germany"],"affiliations":[{"raw_affiliation_string":"DKFZ, German Cancer Research Center, Division of Molecular Biophysics, Im Neuenheimer Feld 580, D-69120 Heidelberg, Germany and 2Department of Computer Science and Artificial Intelligence, ETSII University of Granada, C/Daniel Saucedo Aranda s/n 18071, Granada, Spain","institution_ids":["https://openalex.org/I173304897","https://openalex.org/I17937529","https://openalex.org/I223822909"]},{"raw_affiliation_string":"German Cancer Research Center, Heidelberg, Germany","institution_ids":["https://openalex.org/I17937529","https://openalex.org/I223822909"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090602806","display_name":"Mechthild Falkenhahn","orcid":null},"institutions":[{"id":"https://openalex.org/I17937529","display_name":"German Cancer Research Center","ror":"https://ror.org/04cdgtt98","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I17937529"]},{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]},{"id":"https://openalex.org/I173304897","display_name":"Universidad de Granada","ror":"https://ror.org/04njjy449","country_code":"ES","type":"education","lineage":["https://openalex.org/I173304897"]}],"countries":["DE","ES"],"is_corresponding":false,"raw_author_name":"M Falkenhahn","raw_affiliation_strings":["DKFZ, German Cancer Research Center, Division of Molecular Biophysics, Im Neuenheimer Feld 580, D-69120 Heidelberg, Germany and 2Department of Computer Science and Artificial Intelligence, ETSII University of Granada, C/Daniel Saucedo Aranda s/n 18071, Granada, Spain","German Cancer Research Center, Heidelberg, Germany"],"affiliations":[{"raw_affiliation_string":"DKFZ, German Cancer Research Center, Division of Molecular Biophysics, Im Neuenheimer Feld 580, D-69120 Heidelberg, Germany and 2Department of Computer Science and Artificial Intelligence, ETSII University of Granada, C/Daniel Saucedo Aranda s/n 18071, Granada, Spain","institution_ids":["https://openalex.org/I173304897","https://openalex.org/I17937529","https://openalex.org/I223822909"]},{"raw_affiliation_string":"German Cancer Research Center, Heidelberg, Germany","institution_ids":["https://openalex.org/I17937529","https://openalex.org/I223822909"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019806146","display_name":"C. Fladerer","orcid":null},"institutions":[{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]},{"id":"https://openalex.org/I17937529","display_name":"German Cancer Research Center","ror":"https://ror.org/04cdgtt98","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I17937529"]},{"id":"https://openalex.org/I173304897","display_name":"Universidad de Granada","ror":"https://ror.org/04njjy449","country_code":"ES","type":"education","lineage":["https://openalex.org/I173304897"]}],"countries":["DE","ES"],"is_corresponding":false,"raw_author_name":"C. Fladerer","raw_affiliation_strings":["DKFZ, German Cancer Research Center, Division of Molecular Biophysics, Im Neuenheimer Feld 580, D-69120 Heidelberg, Germany and 2Department of Computer Science and Artificial Intelligence, ETSII University of Granada, C/Daniel Saucedo Aranda s/n 18071, Granada, Spain","German Cancer Research Center, Heidelberg, Germany"],"affiliations":[{"raw_affiliation_string":"DKFZ, German Cancer Research Center, Division of Molecular Biophysics, Im Neuenheimer Feld 580, D-69120 Heidelberg, Germany and 2Department of Computer Science and Artificial Intelligence, ETSII University of Granada, C/Daniel Saucedo Aranda s/n 18071, Granada, Spain","institution_ids":["https://openalex.org/I173304897","https://openalex.org/I17937529","https://openalex.org/I223822909"]},{"raw_affiliation_string":"German Cancer Research Center, Heidelberg, Germany","institution_ids":["https://openalex.org/I17937529","https://openalex.org/I223822909"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042914599","display_name":"Kay Glatting","orcid":"https://orcid.org/0009-0006-7388-8233"},"institutions":[{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]},{"id":"https://openalex.org/I173304897","display_name":"Universidad de Granada","ror":"https://ror.org/04njjy449","country_code":"ES","type":"education","lineage":["https://openalex.org/I173304897"]},{"id":"https://openalex.org/I17937529","display_name":"German Cancer Research Center","ror":"https://ror.org/04cdgtt98","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I17937529"]}],"countries":["DE","ES"],"is_corresponding":false,"raw_author_name":"K. H. Glatting","raw_affiliation_strings":["DKFZ, German Cancer Research Center, Division of Molecular Biophysics, Im Neuenheimer Feld 580, D-69120 Heidelberg, Germany and 2Department of Computer Science and Artificial Intelligence, ETSII University of Granada, C/Daniel Saucedo Aranda s/n 18071, Granada, Spain","German Cancer Research Center, Heidelberg, Germany"],"affiliations":[{"raw_affiliation_string":"DKFZ, German Cancer Research Center, Division of Molecular Biophysics, Im Neuenheimer Feld 580, D-69120 Heidelberg, Germany and 2Department of Computer Science and Artificial Intelligence, ETSII University of Granada, C/Daniel Saucedo Aranda s/n 18071, Granada, Spain","institution_ids":["https://openalex.org/I173304897","https://openalex.org/I17937529","https://openalex.org/I223822909"]},{"raw_affiliation_string":"German Cancer Research Center, Heidelberg, Germany","institution_ids":["https://openalex.org/I17937529","https://openalex.org/I223822909"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109939535","display_name":"S\u00e1ndor Suhai","orcid":null},"institutions":[{"id":"https://openalex.org/I173304897","display_name":"Universidad de Granada","ror":"https://ror.org/04njjy449","country_code":"ES","type":"education","lineage":["https://openalex.org/I173304897"]},{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]},{"id":"https://openalex.org/I17937529","display_name":"German Cancer Research Center","ror":"https://ror.org/04cdgtt98","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I17937529"]}],"countries":["DE","ES"],"is_corresponding":false,"raw_author_name":"S. Suhai","raw_affiliation_strings":["DKFZ, German Cancer Research Center, Division of Molecular Biophysics, Im Neuenheimer Feld 580, D-69120 Heidelberg, Germany and 2Department of Computer Science and Artificial Intelligence, ETSII University of Granada, C/Daniel Saucedo Aranda s/n 18071, Granada, Spain","German Cancer Research Center, Heidelberg, Germany"],"affiliations":[{"raw_affiliation_string":"DKFZ, German Cancer Research Center, Division of Molecular Biophysics, Im Neuenheimer Feld 580, D-69120 Heidelberg, Germany and 2Department of Computer Science and Artificial Intelligence, ETSII University of Granada, C/Daniel Saucedo Aranda s/n 18071, Granada, Spain","institution_ids":["https://openalex.org/I173304897","https://openalex.org/I17937529","https://openalex.org/I223822909"]},{"raw_affiliation_string":"German Cancer Research Center, Heidelberg, Germany","institution_ids":["https://openalex.org/I17937529","https://openalex.org/I223822909"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5081292832","display_name":"Agnes Hotz\u2010Wagenblatt","orcid":"https://orcid.org/0000-0003-1523-2093"},"institutions":[{"id":"https://openalex.org/I17937529","display_name":"German Cancer Research Center","ror":"https://ror.org/04cdgtt98","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I17937529"]},{"id":"https://openalex.org/I173304897","display_name":"Universidad de Granada","ror":"https://ror.org/04njjy449","country_code":"ES","type":"education","lineage":["https://openalex.org/I173304897"]},{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]}],"countries":["DE","ES"],"is_corresponding":false,"raw_author_name":"A. Hotz-Wagenblatt","raw_affiliation_strings":["DKFZ, German Cancer Research Center, Division of Molecular Biophysics, Im Neuenheimer Feld 580, D-69120 Heidelberg, Germany and 2Department of Computer Science and Artificial Intelligence, ETSII University of Granada, C/Daniel Saucedo Aranda s/n 18071, Granada, Spain","German Cancer Research Center, Heidelberg, Germany"],"affiliations":[{"raw_affiliation_string":"DKFZ, German Cancer Research Center, Division of Molecular Biophysics, Im Neuenheimer Feld 580, D-69120 Heidelberg, Germany and 2Department of Computer Science and Artificial Intelligence, ETSII University of Granada, C/Daniel Saucedo Aranda s/n 18071, Granada, Spain","institution_ids":["https://openalex.org/I173304897","https://openalex.org/I17937529","https://openalex.org/I223822909"]},{"raw_affiliation_string":"German Cancer Research Center, Heidelberg, Germany","institution_ids":["https://openalex.org/I17937529","https://openalex.org/I223822909"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5037940023"],"corresponding_institution_ids":["https://openalex.org/I17937529","https://openalex.org/I223822909"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":0.5354,"has_fulltext":true,"cited_by_count":19,"citation_normalized_percentile":{"value":0.6519234,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"35","issue":"Web Server","first_page":"W444","last_page":"W450"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7624815702438354},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.6585697531700134},{"id":"https://openalex.org/keywords/suite","display_name":"Suite","score":0.5516555905342102},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5265025496482849},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.5191554427146912},{"id":"https://openalex.org/keywords/server","display_name":"Server","score":0.4695858359336853},{"id":"https://openalex.org/keywords/software-suite","display_name":"Software suite","score":0.4288574457168579},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.42800015211105347},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3326677083969116},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.32252517342567444},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.25716888904571533},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.23851072788238525},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.1540999412536621}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7624815702438354},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.6585697531700134},{"id":"https://openalex.org/C79581498","wikidata":"https://www.wikidata.org/wiki/Q1367530","display_name":"Suite","level":2,"score":0.5516555905342102},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5265025496482849},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.5191554427146912},{"id":"https://openalex.org/C93996380","wikidata":"https://www.wikidata.org/wiki/Q44127","display_name":"Server","level":2,"score":0.4695858359336853},{"id":"https://openalex.org/C2778736646","wikidata":"https://www.wikidata.org/wiki/Q1143070","display_name":"Software suite","level":3,"score":0.4288574457168579},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.42800015211105347},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3326677083969116},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.32252517342567444},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.25716888904571533},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.23851072788238525},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.1540999412536621},{"id":"https://openalex.org/C95457728","wikidata":"https://www.wikidata.org/wiki/Q309","display_name":"History","level":0,"score":0.0},{"id":"https://openalex.org/C166957645","wikidata":"https://www.wikidata.org/wiki/Q23498","display_name":"Archaeology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gkm364","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkm364","pdf_url":"https://academic.oup.com/nar/article-pdf/35/suppl_2/W444/9585517/gkm364.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:17526514","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17526514","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:digibug.ugr.es:10481/32769","is_oa":true,"landing_page_url":"http://hdl.handle.net/10481/32769","pdf_url":null,"source":{"id":"https://openalex.org/S4306400567","display_name":"Institutional Repository of the University of Granada (University of Granada)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I173304897","host_organization_name":"Universidad de Granada","host_organization_lineage":["https://openalex.org/I173304897"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pubmedcentral.nih.gov:1933246","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/1933246","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkm364","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkm364","pdf_url":"https://academic.oup.com/nar/article-pdf/35/suppl_2/W444/9585517/gkm364.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320310693","display_name":"Deutsches Krebsforschungszentrum","ror":"https://ror.org/04cdgtt98"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2035686342.pdf","grobid_xml":"https://content.openalex.org/works/W2035686342.grobid-xml"},"referenced_works_count":36,"referenced_works":["https://openalex.org/W1730348256","https://openalex.org/W1974092887","https://openalex.org/W1979558885","https://openalex.org/W1994025789","https://openalex.org/W1996423252","https://openalex.org/W1997580772","https://openalex.org/W2039941094","https://openalex.org/W2053621743","https://openalex.org/W2055043387","https://openalex.org/W2099275700","https://openalex.org/W2107335514","https://openalex.org/W2111373249","https://openalex.org/W2114083522","https://openalex.org/W2117019496","https://openalex.org/W2121780841","https://openalex.org/W2124145810","https://openalex.org/W2125725297","https://openalex.org/W2126578619","https://openalex.org/W2131581981","https://openalex.org/W2139582206","https://openalex.org/W2140014285","https://openalex.org/W2141172196","https://openalex.org/W2141885858","https://openalex.org/W2142529984","https://openalex.org/W2143173841","https://openalex.org/W2144435864","https://openalex.org/W2147285856","https://openalex.org/W2148853951","https://openalex.org/W2157046483","https://openalex.org/W2158714788","https://openalex.org/W2159805782","https://openalex.org/W2163105490","https://openalex.org/W4210531204","https://openalex.org/W4236236547","https://openalex.org/W4241533536","https://openalex.org/W4252940386"],"related_works":["https://openalex.org/W1516095885","https://openalex.org/W4231704780","https://openalex.org/W2158573927","https://openalex.org/W2626999804","https://openalex.org/W2108921801","https://openalex.org/W4250004941","https://openalex.org/W1981336497","https://openalex.org/W4206079007","https://openalex.org/W2398058485","https://openalex.org/W254965819"],"abstract_inverted_index":{"The":[0,107,135],"wealth":[1],"of":[2,19,77,109,125],"transcript":[3],"information":[4],"that":[5],"has":[6,14],"been":[7],"made":[8],"publicly":[9],"available":[10,139],"in":[11,56,127],"recent":[12],"years":[13],"led":[15],"to":[16,25,41,46,52,91,113],"large":[17],"pools":[18],"individual":[20],"web":[21],"sites":[22],"offering":[23],"access":[24],"bioinformatics":[26],"software.":[27],"However,":[28],"finding":[29],"out":[30],"which":[31],"services":[32],"exist,":[33],"what":[34],"they":[35],"can":[36,60],"or":[37],"cannot":[38],"do,":[39],"how":[40,45],"use":[42],"them":[43],"and":[44,64,101,118],"feed":[47],"results":[48],"from":[49],"one":[50,55],"service":[51],"the":[53,57,84,130,144],"next":[54],"right":[58],"format":[59],"be":[61],"very":[62],"time":[63],"resource":[65],"consuming,":[66],"especially":[67],"for":[68,140],"non-experts.":[69],"Automating":[70],"this":[71],"task,":[72],"we":[73],"present":[74],"a":[75,122],"suite":[76],"protein":[78,92],"annotation":[79,93],"pipelines":[80],"(tasks)":[81],"developed":[82],"at":[83,143],"German":[85],"Cancer":[86],"Research":[87],"Centre":[88],"(DKFZ)":[89],"oriented":[90],"by":[94,97,102],"homology":[95],"(ProtSweep),":[96],"domain":[98],"analysis":[99,120],"(DomainSweep),":[100],"secondary":[103],"structure":[104],"elements":[105],"(2Dsweep).":[106],"aim":[108],"these":[110],"tasks":[111],"is":[112],"perform":[114],"an":[115],"exhaustive":[116],"structural":[117],"functional":[119],"employing":[121],"wide":[123],"variety":[124],"methods":[126],"combination":[128],"with":[129],"most":[131],"updated":[132],"public":[133],"databases.":[134],"three":[136],"servers":[137],"are":[138],"academic":[141],"users":[142],"HUSAR":[145],"open":[146],"server":[147],"http://genius.embnet.dkfz-heidelberg.de/menu/biounit/open-husar/":[148]},"counts_by_year":[{"year":2019,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":5},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":5}],"updated_date":"2026-03-10T16:38:18.471706","created_date":"2025-10-10T00:00:00"}
