{"id":"https://openalex.org/W2130277691","doi":"https://doi.org/10.1093/nar/gkm322","title":"KinasePhos 2.0: a web server for identifying protein kinase-specific phosphorylation sites based on sequences and coupling patterns","display_name":"KinasePhos 2.0: a web server for identifying protein kinase-specific phosphorylation sites based on sequences and coupling patterns","publication_year":2007,"publication_date":"2007-05-22","ids":{"openalex":"https://openalex.org/W2130277691","doi":"https://doi.org/10.1093/nar/gkm322","mag":"2130277691","pmid":"https://pubmed.ncbi.nlm.nih.gov/17517770"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkm322","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkm322","pdf_url":"https://academic.oup.com/nar/article-pdf/35/suppl_2/W588/16747081/gkm322.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/35/suppl_2/W588/16747081/gkm322.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5006355691","display_name":"Yung-Hao Wong","orcid":"https://orcid.org/0000-0001-5448-2269"},"institutions":[{"id":"https://openalex.org/I148366613","display_name":"National Yang Ming Chiao Tung University","ror":"https://ror.org/00se2k293","country_code":"TW","type":"education","lineage":["https://openalex.org/I148366613"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Yung-Hao Wong","raw_affiliation_strings":["Institute of Bioinformatics, National Chiao Tung University, Hsin-chu 300, Taiwan","Institute of Bioinformatics, National Chiao Tung University, Hsin-Chu 300, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Bioinformatics, National Chiao Tung University, Hsin-chu 300, Taiwan","institution_ids":["https://openalex.org/I148366613"]},{"raw_affiliation_string":"Institute of Bioinformatics, National Chiao Tung University, Hsin-Chu 300, Taiwan","institution_ids":["https://openalex.org/I148366613"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045675277","display_name":"Tzong-Yi Lee","orcid":"https://orcid.org/0000-0001-8475-7868"},"institutions":[{"id":"https://openalex.org/I148366613","display_name":"National Yang Ming Chiao Tung University","ror":"https://ror.org/00se2k293","country_code":"TW","type":"education","lineage":["https://openalex.org/I148366613"]},{"id":"https://openalex.org/I4210092384","display_name":"Institute of Biological Chemistry, Academia Sinica","ror":"https://ror.org/00jt3dw39","country_code":"TW","type":"facility","lineage":["https://openalex.org/I4210092384","https://openalex.org/I84653119"]},{"id":"https://openalex.org/I4210098366","display_name":"Institute of Information Science, Academia Sinica","ror":"https://ror.org/00z83z196","country_code":"TW","type":"facility","lineage":["https://openalex.org/I4210098366","https://openalex.org/I84653119"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Tzong-Yi Lee","raw_affiliation_strings":["Institute of Bioinformatics, 2 Department of Biological Science and Technology, 3 Core Facility for Structural Bioinformatics, National Chiao Tung University, Hsin-chu 300, Taiwan and 4 Institute of Information Science, Academia Sinica, 128sec. 2, Academia Rd, Taipei, Taiwan","National Yang Ming Chiao Tung University, Hsinchu, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Bioinformatics, 2 Department of Biological Science and Technology, 3 Core Facility for Structural Bioinformatics, National Chiao Tung University, Hsin-chu 300, Taiwan and 4 Institute of Information Science, Academia Sinica, 128sec. 2, Academia Rd, Taipei, Taiwan","institution_ids":["https://openalex.org/I4210092384","https://openalex.org/I4210098366"]},{"raw_affiliation_string":"National Yang Ming Chiao Tung University, Hsinchu, Taiwan","institution_ids":["https://openalex.org/I148366613"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004540138","display_name":"Han\u2010Kuen Liang","orcid":null},"institutions":[{"id":"https://openalex.org/I4210092384","display_name":"Institute of Biological Chemistry, Academia Sinica","ror":"https://ror.org/00jt3dw39","country_code":"TW","type":"facility","lineage":["https://openalex.org/I4210092384","https://openalex.org/I84653119"]},{"id":"https://openalex.org/I4210098366","display_name":"Institute of Information Science, Academia Sinica","ror":"https://ror.org/00z83z196","country_code":"TW","type":"facility","lineage":["https://openalex.org/I4210098366","https://openalex.org/I84653119"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Han-Kuen Liang","raw_affiliation_strings":["Institute of Bioinformatics, 2 Department of Biological Science and Technology, 3 Core Facility for Structural Bioinformatics, National Chiao Tung University, Hsin-chu 300, Taiwan and 4 Institute of Information Science, Academia Sinica, 128sec. 2, Academia Rd, Taipei, Taiwan","Institute of Information Science Academia Sinica, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Bioinformatics, 2 Department of Biological Science and Technology, 3 Core Facility for Structural Bioinformatics, National Chiao Tung University, Hsin-chu 300, Taiwan and 4 Institute of Information Science, Academia Sinica, 128sec. 2, Academia Rd, Taipei, Taiwan","institution_ids":["https://openalex.org/I4210092384","https://openalex.org/I4210098366"]},{"raw_affiliation_string":"Institute of Information Science Academia Sinica, Taiwan","institution_ids":["https://openalex.org/I4210098366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025510147","display_name":"Chia\u2010Mao Huang","orcid":null},"institutions":[{"id":"https://openalex.org/I148366613","display_name":"National Yang Ming Chiao Tung University","ror":"https://ror.org/00se2k293","country_code":"TW","type":"education","lineage":["https://openalex.org/I148366613"]},{"id":"https://openalex.org/I4210092384","display_name":"Institute of Biological Chemistry, Academia Sinica","ror":"https://ror.org/00jt3dw39","country_code":"TW","type":"facility","lineage":["https://openalex.org/I4210092384","https://openalex.org/I84653119"]},{"id":"https://openalex.org/I4210098366","display_name":"Institute of Information Science, Academia Sinica","ror":"https://ror.org/00z83z196","country_code":"TW","type":"facility","lineage":["https://openalex.org/I4210098366","https://openalex.org/I84653119"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Chia-Mao Huang","raw_affiliation_strings":["Institute of Bioinformatics, 2 Department of Biological Science and Technology, 3 Core Facility for Structural Bioinformatics, National Chiao Tung University, Hsin-chu 300, Taiwan and 4 Institute of Information Science, Academia Sinica, 128sec. 2, Academia Rd, Taipei, Taiwan","National Yang Ming Chiao Tung University, Hsinchu, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Bioinformatics, 2 Department of Biological Science and Technology, 3 Core Facility for Structural Bioinformatics, National Chiao Tung University, Hsin-chu 300, Taiwan and 4 Institute of Information Science, Academia Sinica, 128sec. 2, Academia Rd, Taipei, Taiwan","institution_ids":["https://openalex.org/I4210092384","https://openalex.org/I4210098366"]},{"raw_affiliation_string":"National Yang Ming Chiao Tung University, Hsinchu, Taiwan","institution_ids":["https://openalex.org/I148366613"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062758983","display_name":"Ting\u2010Yuan Wang","orcid":null},"institutions":[{"id":"https://openalex.org/I4210092384","display_name":"Institute of Biological Chemistry, Academia Sinica","ror":"https://ror.org/00jt3dw39","country_code":"TW","type":"facility","lineage":["https://openalex.org/I4210092384","https://openalex.org/I84653119"]},{"id":"https://openalex.org/I4210098366","display_name":"Institute of Information Science, Academia Sinica","ror":"https://ror.org/00z83z196","country_code":"TW","type":"facility","lineage":["https://openalex.org/I4210098366","https://openalex.org/I84653119"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Ting-Yuan Wang","raw_affiliation_strings":["Institute of Bioinformatics, 2 Department of Biological Science and Technology, 3 Core Facility for Structural Bioinformatics, National Chiao Tung University, Hsin-chu 300, Taiwan and 4 Institute of Information Science, Academia Sinica, 128sec. 2, Academia Rd, Taipei, Taiwan","Department of Life Science and Institute of Biotechnology"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Bioinformatics, 2 Department of Biological Science and Technology, 3 Core Facility for Structural Bioinformatics, National Chiao Tung University, Hsin-chu 300, Taiwan and 4 Institute of Information Science, Academia Sinica, 128sec. 2, Academia Rd, Taipei, Taiwan","institution_ids":["https://openalex.org/I4210092384","https://openalex.org/I4210098366"]},{"raw_affiliation_string":"Department of Life Science and Institute of Biotechnology","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101091270","display_name":"Yihuan Yang","orcid":null},"institutions":[{"id":"https://openalex.org/I148366613","display_name":"National Yang Ming Chiao Tung University","ror":"https://ror.org/00se2k293","country_code":"TW","type":"education","lineage":["https://openalex.org/I148366613"]},{"id":"https://openalex.org/I4210092384","display_name":"Institute of Biological Chemistry, Academia Sinica","ror":"https://ror.org/00jt3dw39","country_code":"TW","type":"facility","lineage":["https://openalex.org/I4210092384","https://openalex.org/I84653119"]},{"id":"https://openalex.org/I4210098366","display_name":"Institute of Information Science, Academia Sinica","ror":"https://ror.org/00z83z196","country_code":"TW","type":"facility","lineage":["https://openalex.org/I4210098366","https://openalex.org/I84653119"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Yi-Huan Yang","raw_affiliation_strings":["Institute of Bioinformatics, 2 Department of Biological Science and Technology, 3 Core Facility for Structural Bioinformatics, National Chiao Tung University, Hsin-chu 300, Taiwan and 4 Institute of Information Science, Academia Sinica, 128sec. 2, Academia Rd, Taipei, Taiwan","National Chiao Tung University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Bioinformatics, 2 Department of Biological Science and Technology, 3 Core Facility for Structural Bioinformatics, National Chiao Tung University, Hsin-chu 300, Taiwan and 4 Institute of Information Science, Academia Sinica, 128sec. 2, Academia Rd, Taipei, Taiwan","institution_ids":["https://openalex.org/I4210092384","https://openalex.org/I4210098366"]},{"raw_affiliation_string":"National Chiao Tung University","institution_ids":["https://openalex.org/I148366613"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102152597","display_name":"Chia\u2010Huei Chu","orcid":"https://orcid.org/0000-0002-9014-8986"},"institutions":[{"id":"https://openalex.org/I148366613","display_name":"National Yang Ming Chiao Tung University","ror":"https://ror.org/00se2k293","country_code":"TW","type":"education","lineage":["https://openalex.org/I148366613"]},{"id":"https://openalex.org/I4210092384","display_name":"Institute of Biological Chemistry, Academia Sinica","ror":"https://ror.org/00jt3dw39","country_code":"TW","type":"facility","lineage":["https://openalex.org/I4210092384","https://openalex.org/I84653119"]},{"id":"https://openalex.org/I4210098366","display_name":"Institute of Information Science, Academia Sinica","ror":"https://ror.org/00z83z196","country_code":"TW","type":"facility","lineage":["https://openalex.org/I4210098366","https://openalex.org/I84653119"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Chia-Huei Chu","raw_affiliation_strings":["Institute of Bioinformatics, 2 Department of Biological Science and Technology, 3 Core Facility for Structural Bioinformatics, National Chiao Tung University, Hsin-chu 300, Taiwan and 4 Institute of Information Science, Academia Sinica, 128sec. 2, Academia Rd, Taipei, Taiwan","National Chiao Tung University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Bioinformatics, 2 Department of Biological Science and Technology, 3 Core Facility for Structural Bioinformatics, National Chiao Tung University, Hsin-chu 300, Taiwan and 4 Institute of Information Science, Academia Sinica, 128sec. 2, Academia Rd, Taipei, Taiwan","institution_ids":["https://openalex.org/I4210092384","https://openalex.org/I4210098366"]},{"raw_affiliation_string":"National Chiao Tung University","institution_ids":["https://openalex.org/I148366613"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040277769","display_name":"Hsien\u2010Da Huang","orcid":"https://orcid.org/0000-0003-2857-7023"},"institutions":[{"id":"https://openalex.org/I4210092384","display_name":"Institute of Biological Chemistry, Academia Sinica","ror":"https://ror.org/00jt3dw39","country_code":"TW","type":"facility","lineage":["https://openalex.org/I4210092384","https://openalex.org/I84653119"]},{"id":"https://openalex.org/I4210098366","display_name":"Institute of Information Science, Academia Sinica","ror":"https://ror.org/00z83z196","country_code":"TW","type":"facility","lineage":["https://openalex.org/I4210098366","https://openalex.org/I84653119"]}],"countries":["TW"],"is_corresponding":true,"raw_author_name":"Hsien-Da Huang","raw_affiliation_strings":["Institute of Bioinformatics, 2 Department of Biological Science and Technology, 3 Core Facility for Structural Bioinformatics, National Chiao Tung University, Hsin-chu 300, Taiwan and 4 Institute of Information Science, Academia Sinica, 128sec. 2, Academia Rd, Taipei, Taiwan","Department of Biological Science and Technology"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Bioinformatics, 2 Department of Biological Science and Technology, 3 Core Facility for Structural Bioinformatics, National Chiao Tung University, Hsin-chu 300, Taiwan and 4 Institute of Information Science, Academia Sinica, 128sec. 2, Academia Rd, Taipei, Taiwan","institution_ids":["https://openalex.org/I4210092384","https://openalex.org/I4210098366"]},{"raw_affiliation_string":"Department of Biological Science and Technology","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112454407","display_name":"Ming\u2010Tat Ko","orcid":null},"institutions":[{"id":"https://openalex.org/I4210092384","display_name":"Institute of Biological Chemistry, Academia Sinica","ror":"https://ror.org/00jt3dw39","country_code":"TW","type":"facility","lineage":["https://openalex.org/I4210092384","https://openalex.org/I84653119"]},{"id":"https://openalex.org/I4210098366","display_name":"Institute of Information Science, Academia Sinica","ror":"https://ror.org/00z83z196","country_code":"TW","type":"facility","lineage":["https://openalex.org/I4210098366","https://openalex.org/I84653119"]},{"id":"https://openalex.org/I4210147455","display_name":"Institute of Information Science","ror":"https://ror.org/055q8rh54","country_code":"SI","type":"education","lineage":["https://openalex.org/I4210147455"]}],"countries":["SI","TW"],"is_corresponding":false,"raw_author_name":"Ming-Tat Ko","raw_affiliation_strings":["Institute of Bioinformatics, 2 Department of Biological Science and Technology, 3 Core Facility for Structural Bioinformatics, National Chiao Tung University, Hsin-chu 300, Taiwan and 4 Institute of Information Science, Academia Sinica, 128sec. 2, Academia Rd, Taipei, Taiwan","Institute of Information Science"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Bioinformatics, 2 Department of Biological Science and Technology, 3 Core Facility for Structural Bioinformatics, National Chiao Tung University, Hsin-chu 300, Taiwan and 4 Institute of Information Science, Academia Sinica, 128sec. 2, Academia Rd, Taipei, Taiwan","institution_ids":["https://openalex.org/I4210092384","https://openalex.org/I4210098366"]},{"raw_affiliation_string":"Institute of Information Science","institution_ids":["https://openalex.org/I4210147455"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5102145100","display_name":"Jenn\u2010Kang Hwang","orcid":null},"institutions":[{"id":"https://openalex.org/I4210092384","display_name":"Institute of Biological Chemistry, Academia Sinica","ror":"https://ror.org/00jt3dw39","country_code":"TW","type":"facility","lineage":["https://openalex.org/I4210092384","https://openalex.org/I84653119"]},{"id":"https://openalex.org/I4210098366","display_name":"Institute of Information Science, Academia Sinica","ror":"https://ror.org/00z83z196","country_code":"TW","type":"facility","lineage":["https://openalex.org/I4210098366","https://openalex.org/I84653119"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Jenn-Kang Hwang","raw_affiliation_strings":["Institute of Bioinformatics, 2 Department of Biological Science and Technology, 3 Core Facility for Structural Bioinformatics, National Chiao Tung University, Hsin-chu 300, Taiwan and 4 Institute of Information Science, Academia Sinica, 128sec. 2, Academia Rd, Taipei, Taiwan","Department of Biological Science and Technology"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Bioinformatics, 2 Department of Biological Science and Technology, 3 Core Facility for Structural Bioinformatics, National Chiao Tung University, Hsin-chu 300, Taiwan and 4 Institute of Information Science, Academia Sinica, 128sec. 2, Academia Rd, Taipei, Taiwan","institution_ids":["https://openalex.org/I4210092384","https://openalex.org/I4210098366"]},{"raw_affiliation_string":"Department of Biological Science and Technology","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5040277769"],"corresponding_institution_ids":["https://openalex.org/I4210092384","https://openalex.org/I4210098366"],"apc_list":{"value":3992,"currency":"USD","value_usd":3992},"apc_paid":{"value":3992,"currency":"USD","value_usd":3992},"fwci":5.6009,"has_fulltext":true,"cited_by_count":349,"citation_normalized_percentile":{"value":0.96981404,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"35","issue":"suppl_2","first_page":"W588","last_page":"W594"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.736025333404541},{"id":"https://openalex.org/keywords/phosphorylation","display_name":"Phosphorylation","score":0.7276091575622559},{"id":"https://openalex.org/keywords/threonine","display_name":"Threonine","score":0.6301256418228149},{"id":"https://openalex.org/keywords/jackknife-resampling","display_name":"Jackknife resampling","score":0.6054567098617554},{"id":"https://openalex.org/keywords/protein-phosphorylation","display_name":"Protein phosphorylation","score":0.5568404197692871},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.5048990845680237},{"id":"https://openalex.org/keywords/serine","display_name":"Serine","score":0.4729596972465515},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.46101629734039307},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.4492571949958801},{"id":"https://openalex.org/keywords/coupling","display_name":"Coupling (piping)","score":0.432074636220932},{"id":"https://openalex.org/keywords/support-vector-machine","display_name":"Support vector machine","score":0.42054009437561035},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.4192970395088196},{"id":"https://openalex.org/keywords/amino-acid","display_name":"Amino acid","score":0.41558128595352173},{"id":"https://openalex.org/keywords/protein-kinase-a","display_name":"Protein kinase A","score":0.3923216164112091},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.34949588775634766},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.2628978192806244},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2627987861633301},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.1318792700767517},{"id":"https://openalex.org/keywords/materials-science","display_name":"Materials science","score":0.12466832995414734},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.07820993661880493}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.736025333404541},{"id":"https://openalex.org/C11960822","wikidata":"https://www.wikidata.org/wiki/Q242736","display_name":"Phosphorylation","level":2,"score":0.7276091575622559},{"id":"https://openalex.org/C2775880066","wikidata":"https://www.wikidata.org/wiki/Q186521","display_name":"Threonine","level":4,"score":0.6301256418228149},{"id":"https://openalex.org/C81790035","wikidata":"https://www.wikidata.org/wiki/Q847158","display_name":"Jackknife resampling","level":3,"score":0.6054567098617554},{"id":"https://openalex.org/C87325107","wikidata":"https://www.wikidata.org/wiki/Q7251493","display_name":"Protein phosphorylation","level":4,"score":0.5568404197692871},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.5048990845680237},{"id":"https://openalex.org/C2776414213","wikidata":"https://www.wikidata.org/wiki/Q183290","display_name":"Serine","level":3,"score":0.4729596972465515},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.46101629734039307},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.4492571949958801},{"id":"https://openalex.org/C131584629","wikidata":"https://www.wikidata.org/wiki/Q4308705","display_name":"Coupling (piping)","level":2,"score":0.432074636220932},{"id":"https://openalex.org/C12267149","wikidata":"https://www.wikidata.org/wiki/Q282453","display_name":"Support vector machine","level":2,"score":0.42054009437561035},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.4192970395088196},{"id":"https://openalex.org/C515207424","wikidata":"https://www.wikidata.org/wiki/Q8066","display_name":"Amino acid","level":2,"score":0.41558128595352173},{"id":"https://openalex.org/C97029542","wikidata":"https://www.wikidata.org/wiki/Q281417","display_name":"Protein kinase A","level":3,"score":0.3923216164112091},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.34949588775634766},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.2628978192806244},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2627987861633301},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.1318792700767517},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.12466832995414734},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.07820993661880493},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.0},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.0},{"id":"https://openalex.org/C185429906","wikidata":"https://www.wikidata.org/wiki/Q1130160","display_name":"Estimator","level":2,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C191897082","wikidata":"https://www.wikidata.org/wiki/Q11467","display_name":"Metallurgy","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008390","descriptor_name":"Markov Chains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008390","descriptor_name":"Markov Chains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008390","descriptor_name":"Markov Chains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010750","descriptor_name":"Phosphoproteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010750","descriptor_name":"Phosphoproteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010750","descriptor_name":"Phosphoproteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010750","descriptor_name":"Phosphoproteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010750","descriptor_name":"Phosphoproteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010750","descriptor_name":"Phosphoproteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010766","descriptor_name":"Phosphorylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010766","descriptor_name":"Phosphorylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010766","descriptor_name":"Phosphorylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011336","descriptor_name":"Probability","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011336","descriptor_name":"Probability","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011336","descriptor_name":"Probability","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011494","descriptor_name":"Protein Kinases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011494","descriptor_name":"Protein Kinases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011494","descriptor_name":"Protein Kinases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020134","descriptor_name":"Catalytic Domain","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020134","descriptor_name":"Catalytic Domain","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020134","descriptor_name":"Catalytic Domain","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gkm322","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkm322","pdf_url":"https://academic.oup.com/nar/article-pdf/35/suppl_2/W588/16747081/gkm322.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:17517770","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17517770","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:1933228","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/1933228","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkm322","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkm322","pdf_url":"https://academic.oup.com/nar/article-pdf/35/suppl_2/W588/16747081/gkm322.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320321040","display_name":"National Science Council","ror":"https://ror.org/02kv4zf79"},{"id":"https://openalex.org/F4320322724","display_name":"Ministry of Education, India","ror":"https://ror.org/048xjjh50"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2130277691.pdf","grobid_xml":"https://content.openalex.org/works/W2130277691.grobid-xml"},"referenced_works_count":24,"referenced_works":["https://openalex.org/W1570204439","https://openalex.org/W1973253766","https://openalex.org/W1985085054","https://openalex.org/W1987328021","https://openalex.org/W2021177388","https://openalex.org/W2030205108","https://openalex.org/W2035467628","https://openalex.org/W2038163496","https://openalex.org/W2041877620","https://openalex.org/W2085037886","https://openalex.org/W2098376021","https://openalex.org/W2100984467","https://openalex.org/W2102025585","https://openalex.org/W2104244040","https://openalex.org/W2108559568","https://openalex.org/W2134129243","https://openalex.org/W2137852592","https://openalex.org/W2142529984","https://openalex.org/W2153635508","https://openalex.org/W2154173127","https://openalex.org/W2154865259","https://openalex.org/W2155239883","https://openalex.org/W2166458835","https://openalex.org/W2166884712"],"related_works":["https://openalex.org/W1993181715","https://openalex.org/W4328116740","https://openalex.org/W1870828328","https://openalex.org/W2022815459","https://openalex.org/W2952207463","https://openalex.org/W2321910107","https://openalex.org/W3004442212","https://openalex.org/W2025040183","https://openalex.org/W2080255304","https://openalex.org/W2912581221"],"abstract_inverted_index":{"Due":[0],"to":[1,14,21,122],"the":[2,16,37,54,77,104,111,124,134,143],"importance":[3],"of":[4,36,81,99,107,114,126,147],"protein":[5,55,59,116],"phosphorylation":[6,18,39,70,108],"in":[7],"cellular":[8],"control,":[9],"many":[10],"researches":[11],"are":[12,89,120,154],"undertaken":[13],"predict":[15],"kinase-specific":[17,38],"sites.":[19,40,71],"Referred":[20],"our":[22],"previous":[23],"work,":[24],"KinasePhos":[25,46,161],"1.0,":[26],"incorporated":[27],"profile":[28,57],"hidden":[29],"Markov":[30],"model":[31],"(HMM)":[32],"with":[33,53],"flanking":[34],"residues":[35],"Herein,":[41],"a":[42,64],"new":[43],"web":[44,172],"server,":[45],"2.0,":[47],"incorporates":[48],"support":[49],"vector":[50],"machines":[51],"(SVM)":[52],"sequence":[56],"and":[58,86,110,140,152,158],"coupling":[60,73,100,127],"pattern,":[61],"which":[62],"is":[63,174],"novel":[65],"feature":[66],"used":[67],"for":[68,129],"identifying":[69],"The":[72,95,170],"pattern":[74],"[XdZ]":[75],"denotes":[76],"amino":[78,82,93],"acid":[79,83],"coupling-pattern":[80],"types":[84],"X":[85],"Z":[87],"that":[88],"separated":[90],"by":[91],"d":[92],"acids.":[94],"differences":[96],"or":[97],"quotients":[98],"strength":[101],"C(XdZ)":[102],"between":[103],"positive":[105],"set":[106,113],"sites":[109],"background":[112],"whole":[115],"sequences":[117],"from":[118],"Swiss-Prot":[119],"computed":[121],"determine":[123],"number":[125],"patterns":[128],"training":[130],"SVM":[131],"models.":[132],"After":[133],"evaluation":[135],"based":[136],"on":[137],"k-fold":[138],"cross-validation":[139],"Jackknife":[141],"cross-validation,":[142],"average":[144],"predictive":[145],"accuracy":[146],"phosphorylated":[148],"serine,":[149],"threonine,":[150],"tyrosine":[151],"histidine":[153],"90,":[155],"93,":[156],"88":[157],"93%,":[159],"respectively.":[160],"2.0":[162],"performs":[163],"better":[164],"than":[165],"other":[166],"tools":[167],"previously":[168],"developed.":[169],"proposed":[171],"server":[173],"freely":[175],"available":[176],"at":[177],"http://KinasePhos2.mbc.nctu.edu.tw/.":[178]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":9},{"year":2022,"cited_by_count":12},{"year":2021,"cited_by_count":18},{"year":2020,"cited_by_count":29},{"year":2019,"cited_by_count":23},{"year":2018,"cited_by_count":21},{"year":2017,"cited_by_count":25},{"year":2016,"cited_by_count":27},{"year":2015,"cited_by_count":35},{"year":2014,"cited_by_count":29},{"year":2013,"cited_by_count":27},{"year":2012,"cited_by_count":27}],"updated_date":"2026-08-25T07:29:55.448023","created_date":"2025-10-10T00:00:00"}
