{"id":"https://openalex.org/W1981239956","doi":"https://doi.org/10.1093/nar/gkm299","title":"WebTraceMiner: a web service for processing and mining EST sequence trace files","display_name":"WebTraceMiner: a web service for processing and mining EST sequence trace files","publication_year":2007,"publication_date":"2007-05-08","ids":{"openalex":"https://openalex.org/W1981239956","doi":"https://doi.org/10.1093/nar/gkm299","mag":"1981239956","pmid":"https://pubmed.ncbi.nlm.nih.gov/17488839"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkm299","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkm299","pdf_url":"https://academic.oup.com/nar/article-pdf/35/suppl_2/W137/9584652/gkm299.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/35/suppl_2/W137/9584652/gkm299.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100604811","display_name":"C. Liang","orcid":"https://orcid.org/0000-0001-6938-3175"},"institutions":[{"id":"https://openalex.org/I83328450","display_name":"Miami University","ror":"https://ror.org/05nbqxr67","country_code":"US","type":"education","lineage":["https://openalex.org/I83328450"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"C. Liang","raw_affiliation_strings":["Department of Botany, Miami University, Oxford, Ohio 45056, USA. liangc@muohio.edu","Department of Botany, Miami University, Oxford, Ohio 45056 USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Botany, Miami University, Oxford, Ohio 45056, USA. liangc@muohio.edu","institution_ids":["https://openalex.org/I83328450"]},{"raw_affiliation_string":"Department of Botany, Miami University, Oxford, Ohio 45056 USA","institution_ids":["https://openalex.org/I83328450"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100336740","display_name":"Guangming Wang","orcid":"https://orcid.org/0000-0003-0516-3514"},"institutions":[{"id":"https://openalex.org/I165733156","display_name":"University of Georgia","ror":"https://ror.org/00te3t702","country_code":"US","type":"education","lineage":["https://openalex.org/I165733156"]},{"id":"https://openalex.org/I191208505","display_name":"Xiamen University","ror":"https://ror.org/00mcjh785","country_code":"CN","type":"education","lineage":["https://openalex.org/I191208505"]},{"id":"https://openalex.org/I83328450","display_name":"Miami University","ror":"https://ror.org/05nbqxr67","country_code":"US","type":"education","lineage":["https://openalex.org/I83328450"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"G. Wang","raw_affiliation_strings":["Department of Botany, Miami University, Oxford, Ohio 45056, USA, 2Department of Automation, Xiamen University, Xiamen, Fujian, 361005, China, 3Research Computing Support Group, Miami University, Oxford, Ohio 45056, USA and 4Warnell School of Forestry and Natural Resources, University of Georgia, Athens, Georgia 30602, USA","University of Georgia, Athens, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Botany, Miami University, Oxford, Ohio 45056, USA, 2Department of Automation, Xiamen University, Xiamen, Fujian, 361005, China, 3Research Computing Support Group, Miami University, Oxford, Ohio 45056, USA and 4Warnell School of Forestry and Natural Resources, University of Georgia, Athens, Georgia 30602, USA","institution_ids":["https://openalex.org/I83328450","https://openalex.org/I165733156","https://openalex.org/I191208505"]},{"raw_affiliation_string":"University of Georgia, Athens, United States","institution_ids":["https://openalex.org/I165733156"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100383342","display_name":"Lin Liu","orcid":"https://orcid.org/0000-0003-2843-5738"},"institutions":[{"id":"https://openalex.org/I165733156","display_name":"University of Georgia","ror":"https://ror.org/00te3t702","country_code":"US","type":"education","lineage":["https://openalex.org/I165733156"]},{"id":"https://openalex.org/I191208505","display_name":"Xiamen University","ror":"https://ror.org/00mcjh785","country_code":"CN","type":"education","lineage":["https://openalex.org/I191208505"]},{"id":"https://openalex.org/I83328450","display_name":"Miami University","ror":"https://ror.org/05nbqxr67","country_code":"US","type":"education","lineage":["https://openalex.org/I83328450"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"L. Liu","raw_affiliation_strings":["Department of Botany, Miami University, Oxford, Ohio 45056, USA, 2Department of Automation, Xiamen University, Xiamen, Fujian, 361005, China, 3Research Computing Support Group, Miami University, Oxford, Ohio 45056, USA and 4Warnell School of Forestry and Natural Resources, University of Georgia, Athens, Georgia 30602, USA","University of Georgia, Athens, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Botany, Miami University, Oxford, Ohio 45056, USA, 2Department of Automation, Xiamen University, Xiamen, Fujian, 361005, China, 3Research Computing Support Group, Miami University, Oxford, Ohio 45056, USA and 4Warnell School of Forestry and Natural Resources, University of Georgia, Athens, Georgia 30602, USA","institution_ids":["https://openalex.org/I83328450","https://openalex.org/I165733156","https://openalex.org/I191208505"]},{"raw_affiliation_string":"University of Georgia, Athens, United States","institution_ids":["https://openalex.org/I165733156"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111373172","display_name":"Guoli Ji","orcid":null},"institutions":[{"id":"https://openalex.org/I165733156","display_name":"University of Georgia","ror":"https://ror.org/00te3t702","country_code":"US","type":"education","lineage":["https://openalex.org/I165733156"]},{"id":"https://openalex.org/I191208505","display_name":"Xiamen University","ror":"https://ror.org/00mcjh785","country_code":"CN","type":"education","lineage":["https://openalex.org/I191208505"]},{"id":"https://openalex.org/I83328450","display_name":"Miami University","ror":"https://ror.org/05nbqxr67","country_code":"US","type":"education","lineage":["https://openalex.org/I83328450"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"G. Ji","raw_affiliation_strings":["Department of Botany, Miami University, Oxford, Ohio 45056, USA, 2Department of Automation, Xiamen University, Xiamen, Fujian, 361005, China, 3Research Computing Support Group, Miami University, Oxford, Ohio 45056, USA and 4Warnell School of Forestry and Natural Resources, University of Georgia, Athens, Georgia 30602, USA","University of Georgia, Athens, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Botany, Miami University, Oxford, Ohio 45056, USA, 2Department of Automation, Xiamen University, Xiamen, Fujian, 361005, China, 3Research Computing Support Group, Miami University, Oxford, Ohio 45056, USA and 4Warnell School of Forestry and Natural Resources, University of Georgia, Athens, Georgia 30602, USA","institution_ids":["https://openalex.org/I83328450","https://openalex.org/I165733156","https://openalex.org/I191208505"]},{"raw_affiliation_string":"University of Georgia, Athens, United States","institution_ids":["https://openalex.org/I165733156"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100679211","display_name":"Yizhou Liu","orcid":"https://orcid.org/0000-0002-0760-4179"},"institutions":[{"id":"https://openalex.org/I165733156","display_name":"University of Georgia","ror":"https://ror.org/00te3t702","country_code":"US","type":"education","lineage":["https://openalex.org/I165733156"]},{"id":"https://openalex.org/I191208505","display_name":"Xiamen University","ror":"https://ror.org/00mcjh785","country_code":"CN","type":"education","lineage":["https://openalex.org/I191208505"]},{"id":"https://openalex.org/I83328450","display_name":"Miami University","ror":"https://ror.org/05nbqxr67","country_code":"US","type":"education","lineage":["https://openalex.org/I83328450"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Y. Liu","raw_affiliation_strings":["Department of Botany, Miami University, Oxford, Ohio 45056, USA, 2Department of Automation, Xiamen University, Xiamen, Fujian, 361005, China, 3Research Computing Support Group, Miami University, Oxford, Ohio 45056, USA and 4Warnell School of Forestry and Natural Resources, University of Georgia, Athens, Georgia 30602, USA","University of Georgia, Athens, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Botany, Miami University, Oxford, Ohio 45056, USA, 2Department of Automation, Xiamen University, Xiamen, Fujian, 361005, China, 3Research Computing Support Group, Miami University, Oxford, Ohio 45056, USA and 4Warnell School of Forestry and Natural Resources, University of Georgia, Athens, Georgia 30602, USA","institution_ids":["https://openalex.org/I83328450","https://openalex.org/I165733156","https://openalex.org/I191208505"]},{"raw_affiliation_string":"University of Georgia, Athens, United States","institution_ids":["https://openalex.org/I165733156"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100332217","display_name":"Y-H. Chen","orcid":"https://orcid.org/0000-0002-2720-1115"},"institutions":[{"id":"https://openalex.org/I165733156","display_name":"University of Georgia","ror":"https://ror.org/00te3t702","country_code":"US","type":"education","lineage":["https://openalex.org/I165733156"]},{"id":"https://openalex.org/I191208505","display_name":"Xiamen University","ror":"https://ror.org/00mcjh785","country_code":"CN","type":"education","lineage":["https://openalex.org/I191208505"]},{"id":"https://openalex.org/I83328450","display_name":"Miami University","ror":"https://ror.org/05nbqxr67","country_code":"US","type":"education","lineage":["https://openalex.org/I83328450"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"J. Chen","raw_affiliation_strings":["Department of Botany, Miami University, Oxford, Ohio 45056, USA, 2Department of Automation, Xiamen University, Xiamen, Fujian, 361005, China, 3Research Computing Support Group, Miami University, Oxford, Ohio 45056, USA and 4Warnell School of Forestry and Natural Resources, University of Georgia, Athens, Georgia 30602, USA","University of Georgia, Athens, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Botany, Miami University, Oxford, Ohio 45056, USA, 2Department of Automation, Xiamen University, Xiamen, Fujian, 361005, China, 3Research Computing Support Group, Miami University, Oxford, Ohio 45056, USA and 4Warnell School of Forestry and Natural Resources, University of Georgia, Athens, Georgia 30602, USA","institution_ids":["https://openalex.org/I83328450","https://openalex.org/I165733156","https://openalex.org/I191208505"]},{"raw_affiliation_string":"University of Georgia, Athens, United States","institution_ids":["https://openalex.org/I165733156"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089653140","display_name":"Jason S. Webb","orcid":null},"institutions":[{"id":"https://openalex.org/I165733156","display_name":"University of Georgia","ror":"https://ror.org/00te3t702","country_code":"US","type":"education","lineage":["https://openalex.org/I165733156"]},{"id":"https://openalex.org/I191208505","display_name":"Xiamen University","ror":"https://ror.org/00mcjh785","country_code":"CN","type":"education","lineage":["https://openalex.org/I191208505"]},{"id":"https://openalex.org/I83328450","display_name":"Miami University","ror":"https://ror.org/05nbqxr67","country_code":"US","type":"education","lineage":["https://openalex.org/I83328450"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"J. S. Webb","raw_affiliation_strings":["Department of Botany, Miami University, Oxford, Ohio 45056, USA, 2Department of Automation, Xiamen University, Xiamen, Fujian, 361005, China, 3Research Computing Support Group, Miami University, Oxford, Ohio 45056, USA and 4Warnell School of Forestry and Natural Resources, University of Georgia, Athens, Georgia 30602, USA","University of Georgia, Athens, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Botany, Miami University, Oxford, Ohio 45056, USA, 2Department of Automation, Xiamen University, Xiamen, Fujian, 361005, China, 3Research Computing Support Group, Miami University, Oxford, Ohio 45056, USA and 4Warnell School of Forestry and Natural Resources, University of Georgia, Athens, Georgia 30602, USA","institution_ids":["https://openalex.org/I83328450","https://openalex.org/I165733156","https://openalex.org/I191208505"]},{"raw_affiliation_string":"University of Georgia, Athens, United States","institution_ids":["https://openalex.org/I165733156"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065058961","display_name":"George Reese","orcid":null},"institutions":[{"id":"https://openalex.org/I165733156","display_name":"University of Georgia","ror":"https://ror.org/00te3t702","country_code":"US","type":"education","lineage":["https://openalex.org/I165733156"]},{"id":"https://openalex.org/I191208505","display_name":"Xiamen University","ror":"https://ror.org/00mcjh785","country_code":"CN","type":"education","lineage":["https://openalex.org/I191208505"]},{"id":"https://openalex.org/I83328450","display_name":"Miami University","ror":"https://ror.org/05nbqxr67","country_code":"US","type":"education","lineage":["https://openalex.org/I83328450"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"G. Reese","raw_affiliation_strings":["Department of Botany, Miami University, Oxford, Ohio 45056, USA, 2Department of Automation, Xiamen University, Xiamen, Fujian, 361005, China, 3Research Computing Support Group, Miami University, Oxford, Ohio 45056, USA and 4Warnell School of Forestry and Natural Resources, University of Georgia, Athens, Georgia 30602, USA","University of Georgia, Athens, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Botany, Miami University, Oxford, Ohio 45056, USA, 2Department of Automation, Xiamen University, Xiamen, Fujian, 361005, China, 3Research Computing Support Group, Miami University, Oxford, Ohio 45056, USA and 4Warnell School of Forestry and Natural Resources, University of Georgia, Athens, Georgia 30602, USA","institution_ids":["https://openalex.org/I83328450","https://openalex.org/I165733156","https://openalex.org/I191208505"]},{"raw_affiliation_string":"University of Georgia, Athens, United States","institution_ids":["https://openalex.org/I165733156"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5000171919","display_name":"Jeffrey F. D. Dean","orcid":"https://orcid.org/0000-0003-1208-1023"},"institutions":[{"id":"https://openalex.org/I165733156","display_name":"University of Georgia","ror":"https://ror.org/00te3t702","country_code":"US","type":"education","lineage":["https://openalex.org/I165733156"]},{"id":"https://openalex.org/I191208505","display_name":"Xiamen University","ror":"https://ror.org/00mcjh785","country_code":"CN","type":"education","lineage":["https://openalex.org/I191208505"]},{"id":"https://openalex.org/I83328450","display_name":"Miami University","ror":"https://ror.org/05nbqxr67","country_code":"US","type":"education","lineage":["https://openalex.org/I83328450"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"J. F. D. Dean","raw_affiliation_strings":["Department of Botany, Miami University, Oxford, Ohio 45056, USA, 2Department of Automation, Xiamen University, Xiamen, Fujian, 361005, China, 3Research Computing Support Group, Miami University, Oxford, Ohio 45056, USA and 4Warnell School of Forestry and Natural Resources, University of Georgia, Athens, Georgia 30602, USA","University of Georgia, Athens, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Botany, Miami University, Oxford, Ohio 45056, USA, 2Department of Automation, Xiamen University, Xiamen, Fujian, 361005, China, 3Research Computing Support Group, Miami University, Oxford, Ohio 45056, USA and 4Warnell School of Forestry and Natural Resources, University of Georgia, Athens, Georgia 30602, USA","institution_ids":["https://openalex.org/I83328450","https://openalex.org/I165733156","https://openalex.org/I191208505"]},{"raw_affiliation_string":"University of Georgia, Athens, United States","institution_ids":["https://openalex.org/I165733156"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":9,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":1.2113,"has_fulltext":false,"cited_by_count":12,"citation_normalized_percentile":{"value":0.76930976,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"35","issue":"Web Server","first_page":"W137","last_page":"W142"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9922000169754028,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9922000169754028,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9282000064849854,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.9278556704521179},{"id":"https://openalex.org/keywords/trace","display_name":"TRACE (psycholinguistics)","score":0.6541123390197754},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.591622531414032},{"id":"https://openalex.org/keywords/service","display_name":"Service (business)","score":0.4421476423740387},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.40697890520095825},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3226529061794281},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2862522602081299}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.9278556704521179},{"id":"https://openalex.org/C75291252","wikidata":"https://www.wikidata.org/wiki/Q1315756","display_name":"TRACE (psycholinguistics)","level":2,"score":0.6541123390197754},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.591622531414032},{"id":"https://openalex.org/C2780378061","wikidata":"https://www.wikidata.org/wiki/Q25351891","display_name":"Service (business)","level":2,"score":0.4421476423740387},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.40697890520095825},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3226529061794281},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2862522602081299},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C136264566","wikidata":"https://www.wikidata.org/wiki/Q159810","display_name":"Economy","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D018076","descriptor_name":"DNA, Complementary","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018076","descriptor_name":"DNA, Complementary","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018076","descriptor_name":"DNA, Complementary","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018076","descriptor_name":"DNA, Complementary","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D018076","descriptor_name":"DNA, Complementary","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D018076","descriptor_name":"DNA, Complementary","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020224","descriptor_name":"Expressed Sequence Tags","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020224","descriptor_name":"Expressed Sequence Tags","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020224","descriptor_name":"Expressed Sequence Tags","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gkm299","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkm299","pdf_url":"https://academic.oup.com/nar/article-pdf/35/suppl_2/W137/9584652/gkm299.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:17488839","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17488839","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.280.395","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.280.395","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ftp://ftp.ncbi.nlm.nih.gov/pub/pmc/58/c3/Nucleic_Acids_Res_2007_Jul_35(Web_Server_issue)_W137-W142.tar.gz","raw_type":"text"},{"id":"pmh:oai:pubmedcentral.nih.gov:1933163","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/1933163","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkm299","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkm299","pdf_url":"https://academic.oup.com/nar/article-pdf/35/suppl_2/W137/9584652/gkm299.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320309249","display_name":"University of Miami","ror":"https://ror.org/02dgjyy92"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":21,"referenced_works":["https://openalex.org/W957639803","https://openalex.org/W1507062346","https://openalex.org/W1555225961","https://openalex.org/W1976007281","https://openalex.org/W1985726486","https://openalex.org/W1991307293","https://openalex.org/W2041956242","https://openalex.org/W2053927782","https://openalex.org/W2063993421","https://openalex.org/W2100276623","https://openalex.org/W2104086373","https://openalex.org/W2121016876","https://openalex.org/W2125973903","https://openalex.org/W2140770632","https://openalex.org/W2144975794","https://openalex.org/W2150313163","https://openalex.org/W2150934173","https://openalex.org/W2158714788","https://openalex.org/W2162983919","https://openalex.org/W2782267736","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W2131958170","https://openalex.org/W2061122711","https://openalex.org/W2273754158","https://openalex.org/W4247954915","https://openalex.org/W2336747664","https://openalex.org/W2357130048","https://openalex.org/W4206605161","https://openalex.org/W2092234295","https://openalex.org/W1971270045","https://openalex.org/W2087392923"],"abstract_inverted_index":{"Expressed":[0],"sequence":[1,87,122,137],"tags":[2],"(ESTs)":[3],"remain":[4],"a":[5,120,130,175],"dominant":[6],"approach":[7],"for":[8,25,56,79,112,125],"characterizing":[9],"the":[10],"protein-encoding":[11],"portions":[12],"of":[13,39,50,59,66,76,136,146,184,189],"various":[14],"genomes.":[15],"Due":[16],"to":[17,106,173,178],"inherent":[18],"deficiencies,":[19],"they":[20],"also":[21],"present":[22],"serious":[23],"challenges":[24],"data":[26,57,64,111,180],"quality":[27],"control.":[28],"Before":[29],"GenBank":[30],"submission,":[31],"EST":[32,127,168],"sequences":[33,52],"are":[34],"typically":[35],"screened":[36],"and":[37,41,62,108,134,143,159,170,182],"trimmed":[38],"vector":[40,150],"adapter/linker":[42,152],"sequences,":[43,153],"as":[44,46,97,119],"well":[45],"polyA/T":[47],"tails.":[48,163],"Removal":[49],"these":[51],"presents":[53],"an":[54],"obstacle":[55],"validation":[58,181],"error-prone":[60,185],"ESTs":[61,186],"impedes":[63],"mining":[65,135,183],"certain":[67],"functional":[68,191],"motifs,":[69],"whose":[70],"detection":[71,133],"relies":[72],"on":[73,132],"accurate":[74],"annotation":[75],"positional":[77],"information":[78,88],"polyA":[80,160],"tails":[81],"added":[82],"posttranscriptionally.":[83],"As":[84],"raw":[85,126],"DNA":[86],"is":[89],"made":[90],"increasingly":[91],"available":[92],"from":[93],"public":[94,121,167],"repositories,":[95],"such":[96],"NCBI":[98],"Trace":[99],"Archive,":[100],"new":[101,113,190],"tools":[102],"will":[103],"be":[104,174],"necessary":[105],"reanalyze":[107],"mine":[109],"this":[110],"information.":[114],"WebTraceMiner":[115,164],"(www.conifergdb.org/software/wtm)":[116],"was":[117],"designed":[118],"processing":[123],"service":[124],"traces,":[128],"with":[129],"focus":[131],"features":[138],"that":[139],"help":[140],"characterize":[141],"3'":[142],"5'":[144],"termini":[145],"cDNA":[147],"inserts,":[148],"including":[149],"fragments,":[151],"insert-flanking":[154],"restriction":[155],"endonuclease":[156],"recognition":[157],"sites":[158],"or":[161],"polyT":[162],"complements":[165],"other":[166],"resources":[169],"should":[171],"prove":[172],"unique":[176],"tool":[177],"facilitate":[179],"(e.g.":[187],"discovery":[188],"motifs).":[192]},"counts_by_year":[{"year":2017,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
