{"id":"https://openalex.org/W2095319152","doi":"https://doi.org/10.1093/nar/gkm224","title":"Phylemon: a suite of web tools for molecular evolution, phylogenetics and phylogenomics","display_name":"Phylemon: a suite of web tools for molecular evolution, phylogenetics and phylogenomics","publication_year":2007,"publication_date":"2007-04-24","ids":{"openalex":"https://openalex.org/W2095319152","doi":"https://doi.org/10.1093/nar/gkm224","mag":"2095319152","pmid":"https://pubmed.ncbi.nlm.nih.gov/17452346"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkm224","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkm224","pdf_url":"https://academic.oup.com/nar/article-pdf/35/suppl_2/W38/9583986/gkm224.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/35/suppl_2/W38/9583986/gkm224.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5005495520","display_name":"Joaqu\u00edn T\u00e1rraga","orcid":null},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"J. Tarraga","raw_affiliation_strings":["Bioinformatics Department, Centro de Investigaci\u00f3n Pr\u00edncipe Felipe, INB, CIPF, Valencia 46013, Spain"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Department, Centro de Investigaci\u00f3n Pr\u00edncipe Felipe, INB, CIPF, Valencia 46013, Spain","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068938981","display_name":"Ignacio Medina","orcid":"https://orcid.org/0000-0003-0095-670X"},"institutions":[{"id":"https://openalex.org/I4210165109","display_name":"Centro de Investigacion Principe Felipe","ror":"https://ror.org/05xr2yq54","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210165109"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"I. Medina","raw_affiliation_strings":["Bioinformatics Department, Centro de Investigaci\u00f3n Pr\u00edncipe Felipe (CIPF) and 2Functional Genomics Node, INB, CIPF, Valencia 46013, Spain"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Department, Centro de Investigaci\u00f3n Pr\u00edncipe Felipe (CIPF) and 2Functional Genomics Node, INB, CIPF, Valencia 46013, Spain","institution_ids":["https://openalex.org/I4210165109"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030130295","display_name":"Leonardo Arbiza","orcid":null},"institutions":[{"id":"https://openalex.org/I4210165109","display_name":"Centro de Investigacion Principe Felipe","ror":"https://ror.org/05xr2yq54","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210165109"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"L. Arbiza","raw_affiliation_strings":["Bioinformatics Department, Centro de Investigaci\u00f3n Pr\u00edncipe Felipe (CIPF) and 2Functional Genomics Node, INB, CIPF, Valencia 46013, Spain"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Department, Centro de Investigaci\u00f3n Pr\u00edncipe Felipe (CIPF) and 2Functional Genomics Node, INB, CIPF, Valencia 46013, Spain","institution_ids":["https://openalex.org/I4210165109"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050318013","display_name":"Jaime Huerta\u2010Cepas","orcid":"https://orcid.org/0000-0003-4195-5025"},"institutions":[{"id":"https://openalex.org/I4210165109","display_name":"Centro de Investigacion Principe Felipe","ror":"https://ror.org/05xr2yq54","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210165109"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"J. Huerta-Cepas","raw_affiliation_strings":["Bioinformatics Department, Centro de Investigaci\u00f3n Pr\u00edncipe Felipe (CIPF) and 2Functional Genomics Node, INB, CIPF, Valencia 46013, Spain"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Department, Centro de Investigaci\u00f3n Pr\u00edncipe Felipe (CIPF) and 2Functional Genomics Node, INB, CIPF, Valencia 46013, Spain","institution_ids":["https://openalex.org/I4210165109"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003394700","display_name":"Toni Gabald\u00f3n","orcid":"https://orcid.org/0000-0003-0019-1735"},"institutions":[{"id":"https://openalex.org/I4210165109","display_name":"Centro de Investigacion Principe Felipe","ror":"https://ror.org/05xr2yq54","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210165109"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"T. Gabaldon","raw_affiliation_strings":["Bioinformatics Department, Centro de Investigaci\u00f3n Pr\u00edncipe Felipe (CIPF) and 2Functional Genomics Node, INB, CIPF, Valencia 46013, Spain"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Department, Centro de Investigaci\u00f3n Pr\u00edncipe Felipe (CIPF) and 2Functional Genomics Node, INB, CIPF, Valencia 46013, Spain","institution_ids":["https://openalex.org/I4210165109"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074140420","display_name":"Joaqu\u0131\u0301n Dopazo","orcid":"https://orcid.org/0000-0003-3318-120X"},"institutions":[{"id":"https://openalex.org/I4210165109","display_name":"Centro de Investigacion Principe Felipe","ror":"https://ror.org/05xr2yq54","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210165109"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"J. Dopazo","raw_affiliation_strings":["Bioinformatics Department, Centro de Investigaci\u00f3n Pr\u00edncipe Felipe (CIPF) and 2Functional Genomics Node, INB, CIPF, Valencia 46013, Spain"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Department, Centro de Investigaci\u00f3n Pr\u00edncipe Felipe (CIPF) and 2Functional Genomics Node, INB, CIPF, Valencia 46013, Spain","institution_ids":["https://openalex.org/I4210165109"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5087451958","display_name":"Hern\u00e1n Dopazo","orcid":"https://orcid.org/0000-0001-6125-2357"},"institutions":[{"id":"https://openalex.org/I4210165109","display_name":"Centro de Investigacion Principe Felipe","ror":"https://ror.org/05xr2yq54","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210165109"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"H. Dopazo","raw_affiliation_strings":["Bioinformatics Department, Centro de Investigacio n Pr ncipe Felipe (CIPF) and","Bioinformatics Department, Centro de Investigaci\u00f3n Pr\u00edncipe Felipe (CIPF) and 2Functional Genomics Node, INB, CIPF, Valencia 46013, Spain"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Department, Centro de Investigacio n Pr ncipe Felipe (CIPF) and","institution_ids":["https://openalex.org/I4210165109"]},{"raw_affiliation_string":"Bioinformatics Department, Centro de Investigaci\u00f3n Pr\u00edncipe Felipe (CIPF) and 2Functional Genomics Node, INB, CIPF, Valencia 46013, Spain","institution_ids":["https://openalex.org/I4210165109"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5005495520"],"corresponding_institution_ids":[],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":3.2274,"has_fulltext":true,"cited_by_count":49,"citation_normalized_percentile":{"value":0.92490409,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"35","issue":"Web Server","first_page":"W38","last_page":"W42"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11354","display_name":"Evolution and Paleontology Studies","score":0.9742000102996826,"subfield":{"id":"https://openalex.org/subfields/1911","display_name":"Paleontology"},"field":{"id":"https://openalex.org/fields/19","display_name":"Earth and Planetary Sciences"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10012","display_name":"Genetic diversity and population structure","score":0.9725000262260437,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/phylogenomics","display_name":"Phylogenomics","score":0.9322134256362915},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7227017283439636},{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.7173697352409363},{"id":"https://openalex.org/keywords/phylogenetics","display_name":"Phylogenetics","score":0.6415442824363708},{"id":"https://openalex.org/keywords/suite","display_name":"Suite","score":0.5875974297523499},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.5363311767578125},{"id":"https://openalex.org/keywords/concatenation","display_name":"Concatenation (mathematics)","score":0.527643620967865},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.5110100507736206},{"id":"https://openalex.org/keywords/session","display_name":"Session (web analytics)","score":0.41488635540008545},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.39983752369880676},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.32698357105255127},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.32242703437805176},{"id":"https://openalex.org/keywords/clade","display_name":"Clade","score":0.20878955721855164},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.18685519695281982},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.16716647148132324},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.16171130537986755},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.13411054015159607}],"concepts":[{"id":"https://openalex.org/C70343354","wikidata":"https://www.wikidata.org/wiki/Q3381973","display_name":"Phylogenomics","level":5,"score":0.9322134256362915},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7227017283439636},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.7173697352409363},{"id":"https://openalex.org/C90132467","wikidata":"https://www.wikidata.org/wiki/Q171184","display_name":"Phylogenetics","level":3,"score":0.6415442824363708},{"id":"https://openalex.org/C79581498","wikidata":"https://www.wikidata.org/wiki/Q1367530","display_name":"Suite","level":2,"score":0.5875974297523499},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.5363311767578125},{"id":"https://openalex.org/C87619178","wikidata":"https://www.wikidata.org/wiki/Q126002","display_name":"Concatenation (mathematics)","level":2,"score":0.527643620967865},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.5110100507736206},{"id":"https://openalex.org/C2779182362","wikidata":"https://www.wikidata.org/wiki/Q17126187","display_name":"Session (web analytics)","level":2,"score":0.41488635540008545},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.39983752369880676},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.32698357105255127},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.32242703437805176},{"id":"https://openalex.org/C44465124","wikidata":"https://www.wikidata.org/wiki/Q713623","display_name":"Clade","level":4,"score":0.20878955721855164},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.18685519695281982},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.16716647148132324},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.16171130537986755},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.13411054015159607},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C166957645","wikidata":"https://www.wikidata.org/wiki/Q23498","display_name":"Archaeology","level":1,"score":0.0},{"id":"https://openalex.org/C95457728","wikidata":"https://www.wikidata.org/wiki/Q309","display_name":"History","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005821","descriptor_name":"Genetic Techniques","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005821","descriptor_name":"Genetic Techniques","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005821","descriptor_name":"Genetic Techniques","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gkm224","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkm224","pdf_url":"https://academic.oup.com/nar/article-pdf/35/suppl_2/W38/9583986/gkm224.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:17452346","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17452346","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.279.8426","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.279.8426","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ftp://ftp.ncbi.nlm.nih.gov/pub/pmc/16/88/Nucleic_Acids_Res_2007_Jul_35(Web_Server_issue)_W38-W42.tar.gz","raw_type":"text"},{"id":"pmh:oai:pubmedcentral.nih.gov:1933211","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/1933211","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkm224","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkm224","pdf_url":"https://academic.oup.com/nar/article-pdf/35/suppl_2/W38/9583986/gkm224.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320321837","display_name":"Ministerio de Econom\u00eda y Competitividad","ror":"https://ror.org/034900433"},{"id":"https://openalex.org/F4320321864","display_name":"Generalitat Valenciana","ror":"https://ror.org/0097mvx21"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2095319152.pdf","grobid_xml":"https://content.openalex.org/works/W2095319152.grobid-xml"},"referenced_works_count":42,"referenced_works":["https://openalex.org/W1898801155","https://openalex.org/W1907806866","https://openalex.org/W1987510089","https://openalex.org/W2014978182","https://openalex.org/W2027938985","https://openalex.org/W2029549914","https://openalex.org/W2037667459","https://openalex.org/W2051161693","https://openalex.org/W2065461553","https://openalex.org/W2082928585","https://openalex.org/W2092437348","https://openalex.org/W2097403532","https://openalex.org/W2097977090","https://openalex.org/W2098448352","https://openalex.org/W2103546861","https://openalex.org/W2104306559","https://openalex.org/W2105585336","https://openalex.org/W2106814707","https://openalex.org/W2106882534","https://openalex.org/W2112956791","https://openalex.org/W2114828923","https://openalex.org/W2115011276","https://openalex.org/W2117790117","https://openalex.org/W2119326915","https://openalex.org/W2119632499","https://openalex.org/W2125778420","https://openalex.org/W2131484804","https://openalex.org/W2132926880","https://openalex.org/W2133585817","https://openalex.org/W2138178197","https://openalex.org/W2140689424","https://openalex.org/W2144654387","https://openalex.org/W2146058063","https://openalex.org/W2156226285","https://openalex.org/W2160364329","https://openalex.org/W2161752959","https://openalex.org/W2164789250","https://openalex.org/W2170996473","https://openalex.org/W2259225862","https://openalex.org/W3199943451","https://openalex.org/W4205666856","https://openalex.org/W4233815609"],"related_works":["https://openalex.org/W2150133233","https://openalex.org/W2057191541","https://openalex.org/W1136090396","https://openalex.org/W2123662536","https://openalex.org/W2145527356","https://openalex.org/W2106669588","https://openalex.org/W3016547028","https://openalex.org/W2101526862","https://openalex.org/W2187053361","https://openalex.org/W4282922216"],"abstract_inverted_index":{"Phylemon":[0,75,108,148,197],"is":[1,146,200],"an":[2,121,144],"online":[3],"platform":[4],"for":[5,88,101,174],"phylogenetic":[6,37,97,176],"and":[7,38,66,105,136,158,165,170],"evolutionary":[8,39,102,130],"analyses":[9,104],"of":[10,26,53,56,82,96,129,134,162],"molecular":[11,64,106],"sequence":[12,90],"data.":[13],"It":[14,41,119],"has":[15,42,109],"been":[16,43],"developed":[17],"as":[18,45],"a":[19,24,46,63,77,192],"web":[20,198],"server":[21,199],"that":[22,112,124],"integrates":[23],"suite":[25],"different":[27],"tools":[28],"selected":[29,80],"among":[30],"the":[31,50,85,126,132,150,156,160],"most":[32,86],"popular":[33],"stand-alone":[34],"programs":[35],"in":[36,74,185,191],"analysis.":[40],"conceived":[44],"natural":[47],"response":[48],"to":[49,61,92,178],"increasing":[51],"demand":[52],"data":[54,139],"analysis":[55,177],"many":[57,183],"experimental":[58],"scientists":[59],"wishing":[60],"add":[62],"evolution":[65],"phylogenetics":[67],"insight":[68],"into":[69],"their":[70],"research.":[71],"Tools":[72],"included":[73],"cover":[76],"wide":[78],"yet":[79],"range":[81],"programs:":[83],"from":[84,115],"basic":[87],"multiple":[89,189],"alignment":[91],"elaborate":[93],"statistical":[94],"methods":[95,100],"reconstruction":[98],"including":[99],"rates":[103],"adaptation.":[107],"several":[110],"features":[111],"differentiates":[113],"it":[114],"other":[116],"resources:":[117],"(i)":[118],"offers":[120],"integrated":[122],"environment":[123],"enables":[125],"direct":[127],"concatenation":[128],"analyses,":[131,153,164],"storage":[133],"results":[135],"handles":[137],"required":[138],"format":[140],"conversions,":[141],"(ii)":[142],"Once":[143],"outfile":[145],"produced,":[147],"suggests":[149],"next":[151],"possible":[152],"thus":[154],"guiding":[155],"user":[157],"facilitating":[159],"integration":[161],"multi-step":[163],"(iii)":[166],"users":[167],"can":[168],"define":[169],"save":[171],"complete":[172],"pipelines":[173],"specific":[175],"be":[179],"automatically":[180],"used":[181],"on":[182],"genes":[184,190],"subsequent":[186],"sessions":[187],"or":[188],"single":[193],"session":[194],"(phylogenomics).":[195],"The":[196],"available":[201],"at":[202],"http://phylemon.bioinfo.cipf.es.":[203]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2021,"cited_by_count":3},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":2}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
