{"id":"https://openalex.org/W1970836666","doi":"https://doi.org/10.1093/nar/gkm1042","title":"GenoList: an integrated environment for comparative analysis of microbial genomes","display_name":"GenoList: an integrated environment for comparative analysis of microbial genomes","publication_year":2007,"publication_date":"2007-11-22","ids":{"openalex":"https://openalex.org/W1970836666","doi":"https://doi.org/10.1093/nar/gkm1042","mag":"1970836666","pmid":"https://pubmed.ncbi.nlm.nih.gov/18032431"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkm1042","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkm1042","pdf_url":"https://academic.oup.com/nar/article-pdf/36/suppl_1/D469/7624059/gkm1042.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/36/suppl_1/D469/7624059/gkm1042.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5026564613","display_name":"Philippe Lechat","orcid":"https://orcid.org/0000-0001-5896-8207"},"institutions":[{"id":"https://openalex.org/I157536573","display_name":"Institut Pasteur","ror":"https://ror.org/0495fxg12","country_code":"FR","type":"nonprofit","lineage":["https://openalex.org/I157536573"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"P. Lechat","raw_affiliation_strings":["Plate-forme Int\u00e9gration et Analyse G\u00e9nomiques, Pasteur G\u00e9nopole Ile-de-France, Institut Pasteur, 28 rue du Docteur Roux, 75724 Paris Cedex 15, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Plate-forme Int\u00e9gration et Analyse G\u00e9nomiques, Pasteur G\u00e9nopole Ile-de-France, Institut Pasteur, 28 rue du Docteur Roux, 75724 Paris Cedex 15, France","institution_ids":["https://openalex.org/I157536573"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062585255","display_name":"Lauren Hummel","orcid":null},"institutions":[{"id":"https://openalex.org/I157536573","display_name":"Institut Pasteur","ror":"https://ror.org/0495fxg12","country_code":"FR","type":"nonprofit","lineage":["https://openalex.org/I157536573"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"L. Hummel","raw_affiliation_strings":["Plate-forme Int\u00e9gration et Analyse G\u00e9nomiques, Pasteur G\u00e9nopole Ile-de-France, Institut Pasteur, 28 rue du Docteur Roux, 75724 Paris Cedex 15, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Plate-forme Int\u00e9gration et Analyse G\u00e9nomiques, Pasteur G\u00e9nopole Ile-de-France, Institut Pasteur, 28 rue du Docteur Roux, 75724 Paris Cedex 15, France","institution_ids":["https://openalex.org/I157536573"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111746348","display_name":"Sandrine Rousseau","orcid":null},"institutions":[{"id":"https://openalex.org/I157536573","display_name":"Institut Pasteur","ror":"https://ror.org/0495fxg12","country_code":"FR","type":"nonprofit","lineage":["https://openalex.org/I157536573"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"S. Rousseau","raw_affiliation_strings":["Plate-forme Int\u00e9gration et Analyse G\u00e9nomiques, Pasteur G\u00e9nopole Ile-de-France, Institut Pasteur, 28 rue du Docteur Roux, 75724 Paris Cedex 15, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Plate-forme Int\u00e9gration et Analyse G\u00e9nomiques, Pasteur G\u00e9nopole Ile-de-France, Institut Pasteur, 28 rue du Docteur Roux, 75724 Paris Cedex 15, France","institution_ids":["https://openalex.org/I157536573"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5061694091","display_name":"Ivan Moszer","orcid":"https://orcid.org/0000-0003-4238-1166"},"institutions":[{"id":"https://openalex.org/I157536573","display_name":"Institut Pasteur","ror":"https://ror.org/0495fxg12","country_code":"FR","type":"nonprofit","lineage":["https://openalex.org/I157536573"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"I. Moszer","raw_affiliation_strings":["Plate-forme Inte gration et Analyse Ge nomiques, Pasteur Ge nopole Ile-de-France, Institut Pasteur, 28 rue du Docteur Roux, 75724 Paris Cedex 15, France","Plate-forme Int\u00e9gration et Analyse G\u00e9nomiques, Pasteur G\u00e9nopole Ile-de-France, Institut Pasteur, 28 rue du Docteur Roux, 75724 Paris Cedex 15, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Plate-forme Inte gration et Analyse Ge nomiques, Pasteur Ge nopole Ile-de-France, Institut Pasteur, 28 rue du Docteur Roux, 75724 Paris Cedex 15, France","institution_ids":["https://openalex.org/I157536573"]},{"raw_affiliation_string":"Plate-forme Int\u00e9gration et Analyse G\u00e9nomiques, Pasteur G\u00e9nopole Ile-de-France, Institut Pasteur, 28 rue du Docteur Roux, 75724 Paris Cedex 15, France","institution_ids":["https://openalex.org/I157536573"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I157536573"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":1.8654,"has_fulltext":true,"cited_by_count":67,"citation_normalized_percentile":{"value":0.84306784,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"36","issue":"Database","first_page":"D469","last_page":"D474"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9890999794006348,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11617","display_name":"Enzyme Production and Characterization","score":0.9692000150680542,"subfield":{"id":"https://openalex.org/subfields/1305","display_name":"Biotechnology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.7543317079544067},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7159605026245117},{"id":"https://openalex.org/keywords/comparative-genomics","display_name":"Comparative genomics","score":0.595531165599823},{"id":"https://openalex.org/keywords/proteome","display_name":"Proteome","score":0.5927259922027588},{"id":"https://openalex.org/keywords/bacterial-genome-size","display_name":"Bacterial genome size","score":0.5707869529724121},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5493783354759216},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.4802675247192383},{"id":"https://openalex.org/keywords/bacillus-subtilis","display_name":"Bacillus subtilis","score":0.4258435368537903},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.4240402281284332},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.33687475323677063},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.25656232237815857},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.2491520643234253},{"id":"https://openalex.org/keywords/bacteria","display_name":"Bacteria","score":0.12679213285446167}],"concepts":[{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.7543317079544067},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7159605026245117},{"id":"https://openalex.org/C105176652","wikidata":"https://www.wikidata.org/wiki/Q1147112","display_name":"Comparative genomics","level":5,"score":0.595531165599823},{"id":"https://openalex.org/C104397665","wikidata":"https://www.wikidata.org/wiki/Q860947","display_name":"Proteome","level":2,"score":0.5927259922027588},{"id":"https://openalex.org/C3742359","wikidata":"https://www.wikidata.org/wiki/Q4839988","display_name":"Bacterial genome size","level":4,"score":0.5707869529724121},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5493783354759216},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.4802675247192383},{"id":"https://openalex.org/C2777272437","wikidata":"https://www.wikidata.org/wiki/Q131238","display_name":"Bacillus subtilis","level":3,"score":0.4258435368537903},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.4240402281284332},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.33687475323677063},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.25656232237815857},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2491520643234253},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.12679213285446167},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C58226133","wikidata":"https://www.wikidata.org/wiki/Q1324199","display_name":"Pulmonary surfactant","level":2,"score":0.0},{"id":"https://openalex.org/C55352822","wikidata":"https://www.wikidata.org/wiki/Q5558978","display_name":"Gibbs isotherm","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gkm1042","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkm1042","pdf_url":"https://academic.oup.com/nar/article-pdf/36/suppl_1/D469/7624059/gkm1042.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:18032431","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18032431","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:HAL:pasteur-02634892v1","is_oa":false,"landing_page_url":"https://pasteur.hal.science/pasteur-02634892","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Research, 2007, DataBase, 36 (Supp. 1), pp.D469-D474. &#x27E8;10.1093/nar/gkm1042&#x27E9;","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2238853","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2238853","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkm1042","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkm1042","pdf_url":"https://academic.oup.com/nar/article-pdf/36/suppl_1/D469/7624059/gkm1042.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Life in Land","score":0.4300000071525574,"id":"https://metadata.un.org/sdg/15"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320310065","display_name":"Danone","ror":"https://ror.org/00aj77a24"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1970836666.pdf","grobid_xml":"https://content.openalex.org/works/W1970836666.grobid-xml"},"referenced_works_count":39,"referenced_works":["https://openalex.org/W1495146083","https://openalex.org/W1944107535","https://openalex.org/W1955545161","https://openalex.org/W1971403296","https://openalex.org/W1971906176","https://openalex.org/W1981095206","https://openalex.org/W1983649400","https://openalex.org/W1984345785","https://openalex.org/W2016299826","https://openalex.org/W2019009845","https://openalex.org/W2024412400","https://openalex.org/W2051824825","https://openalex.org/W2063007776","https://openalex.org/W2100509201","https://openalex.org/W2100882223","https://openalex.org/W2100990314","https://openalex.org/W2106882534","https://openalex.org/W2107228478","https://openalex.org/W2107903949","https://openalex.org/W2110132014","https://openalex.org/W2117280851","https://openalex.org/W2121438763","https://openalex.org/W2123501554","https://openalex.org/W2124681451","https://openalex.org/W2133787379","https://openalex.org/W2155606054","https://openalex.org/W2158714788","https://openalex.org/W2159620702","https://openalex.org/W2161062388","https://openalex.org/W2163217661","https://openalex.org/W2164760520","https://openalex.org/W2168370942","https://openalex.org/W2169267759","https://openalex.org/W2170025661","https://openalex.org/W2171026958","https://openalex.org/W4211083314","https://openalex.org/W4233693215","https://openalex.org/W4245145908","https://openalex.org/W4248664566"],"related_works":["https://openalex.org/W2036948647","https://openalex.org/W1493660383","https://openalex.org/W2146188580","https://openalex.org/W1565527690","https://openalex.org/W2759519215","https://openalex.org/W4318240630","https://openalex.org/W2353729507","https://openalex.org/W2350466590","https://openalex.org/W1985062269","https://openalex.org/W2149356504"],"abstract_inverted_index":{"The":[0,71,86],"multitude":[1],"of":[2,15,32,35,101,125,149,169],"bacterial":[3,51],"genome":[4,48],"sequences":[5,160],"being":[6],"determined":[7],"has":[8],"generated":[9],"new":[10],"requirements":[11],"regarding":[12],"the":[13,30,56,62,67,123,126,131,141],"development":[14],"databases":[16],"and":[17,25,46,59,99,107,161],"graphical":[18],"interfaces:":[19],"these":[20,170],"are":[21,113,144],"needed":[22],"to":[23,44,76,92,139,146],"organize":[24],"retrieve":[26],"biological":[27],"information":[28,78],"from":[29,50,55],"comparison":[31],"large":[33],"sets":[34],"genomes.":[36],"GenoList":[37,53],"(http://genolist.pasteur.fr/GenoList)":[38],"is":[39,122,137],"an":[40,134],"integrated":[41],"environment":[42],"dedicated":[43],"querying":[45],"analyzing":[47],"data":[49,64,72],"species.":[52],"inherits":[54],"SubtiList":[57],"database":[58],"web":[60,87],"server,":[61],"reference":[63],"resource":[65],"for":[66],"Bacillus":[68],"subtilis":[69],"genome.":[70],"model":[73],"was":[74,90],"extended":[75],"hold":[77],"about":[79],"relationships":[80],"between":[81],"genomes":[82],"(e.g.":[83],"protein":[84,159],"families).":[85],"user":[88],"interface":[89],"designed":[91],"primarily":[93],"take":[94],"into":[95],"account":[96],"biologists'":[97],"needs":[98],"modes":[100],"operation.":[102],"Along":[103],"with":[104],"standard":[105],"query":[106],"browsing":[108],"capabilities,":[109],"comparative":[110],"genomics":[111],"facilities":[112],"available,":[114],"including":[115],"subtractive":[116],"proteome":[117],"analysis.":[118],"One":[119],"key":[120],"feature":[121],"integration":[124],"many":[127],"tools":[128],"accessible":[129],"in":[130],"environment.":[132],"As":[133],"example,":[135],"it":[136],"straightforward":[138],"identify":[140],"genes":[142],"that":[143],"specific":[145],"a":[147,154,163,167],"group":[148],"bacteria,":[150],"export":[151],"them":[152],"as":[153],"tab-separated":[155],"list,":[156],"get":[157],"their":[158],"run":[162],"multiple":[164],"alignment":[165],"on":[166],"subset":[168],"sequences.":[171]},"counts_by_year":[{"year":2023,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":8},{"year":2017,"cited_by_count":8},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":9},{"year":2014,"cited_by_count":8},{"year":2013,"cited_by_count":5},{"year":2012,"cited_by_count":4}],"updated_date":"2026-01-13T01:12:25.745995","created_date":"2025-10-10T00:00:00"}
