{"id":"https://openalex.org/W2072285646","doi":"https://doi.org/10.1093/nar/gkl976","title":"The TIGR Rice Genome Annotation Resource: improvements and new features","display_name":"The TIGR Rice Genome Annotation Resource: improvements and new features","publication_year":2006,"publication_date":"2006-12-03","ids":{"openalex":"https://openalex.org/W2072285646","doi":"https://doi.org/10.1093/nar/gkl976","mag":"2072285646","pmid":"https://pubmed.ncbi.nlm.nih.gov/17145706"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkl976","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkl976","pdf_url":"https://academic.oup.com/nar/article-pdf/35/suppl_1/D883/3889570/gkl976.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/35/suppl_1/D883/3889570/gkl976.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5050528031","display_name":"Shuai Ouyang","orcid":"https://orcid.org/0000-0002-2965-1929"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"S. Ouyang","raw_affiliation_strings":["The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA"],"affiliations":[{"raw_affiliation_string":"The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102050508","display_name":"W. Zhu","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"W. Zhu","raw_affiliation_strings":["The Institute for Genomic Research, 9712 Medical Center DriveRockville, MD 20850, USA"],"affiliations":[{"raw_affiliation_string":"The Institute for Genomic Research, 9712 Medical Center DriveRockville, MD 20850, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067372278","display_name":"John P. Hamilton","orcid":"https://orcid.org/0000-0002-8682-5526"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"J. Hamilton","raw_affiliation_strings":["The Institute for Genomic Research, 9712 Medical Center DriveRockville, MD 20850, USA"],"affiliations":[{"raw_affiliation_string":"The Institute for Genomic Research, 9712 Medical Center DriveRockville, MD 20850, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062610045","display_name":"Haining Lin","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"H. Lin","raw_affiliation_strings":["The Institute for Genomic Research, 9712 Medical Center DriveRockville, MD 20850, USA"],"affiliations":[{"raw_affiliation_string":"The Institute for Genomic Research, 9712 Medical Center DriveRockville, MD 20850, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047462066","display_name":"Matthew A. Campbell","orcid":"https://orcid.org/0000-0002-5826-0329"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"M. Campbell","raw_affiliation_strings":["The Institute for Genomic Research, 9712 Medical Center DriveRockville, MD 20850, USA"],"affiliations":[{"raw_affiliation_string":"The Institute for Genomic Research, 9712 Medical Center DriveRockville, MD 20850, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050899822","display_name":"Kevin L. Childs","orcid":"https://orcid.org/0000-0002-3680-062X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"K. Childs","raw_affiliation_strings":["The Institute for Genomic Research, 9712 Medical Center DriveRockville, MD 20850, USA"],"affiliations":[{"raw_affiliation_string":"The Institute for Genomic Research, 9712 Medical Center DriveRockville, MD 20850, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039928314","display_name":"Fran\u00e7oise Thibaud\u2010Nissen","orcid":"https://orcid.org/0000-0003-4957-7807"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"F. Thibaud-Nissen","raw_affiliation_strings":["The Institute for Genomic Research, 9712 Medical Center DriveRockville, MD 20850, USA"],"affiliations":[{"raw_affiliation_string":"The Institute for Genomic Research, 9712 Medical Center DriveRockville, MD 20850, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039699032","display_name":"Renae L. Malek","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"R. L. Malek","raw_affiliation_strings":["The Institute for Genomic Research, 9712 Medical Center DriveRockville, MD 20850, USA"],"affiliations":[{"raw_affiliation_string":"The Institute for Genomic Research, 9712 Medical Center DriveRockville, MD 20850, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011868462","display_name":"Y. Lee","orcid":"https://orcid.org/0000-0002-0088-1114"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Y. Lee","raw_affiliation_strings":["The Institute for Genomic Research, 9712 Medical Center DriveRockville, MD 20850, USA"],"affiliations":[{"raw_affiliation_string":"The Institute for Genomic Research, 9712 Medical Center DriveRockville, MD 20850, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017594765","display_name":"Li Zheng","orcid":"https://orcid.org/0000-0001-7335-4609"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"L. Zheng","raw_affiliation_strings":["The Institute for Genomic Research, 9712 Medical Center DriveRockville, MD 20850, USA"],"affiliations":[{"raw_affiliation_string":"The Institute for Genomic Research, 9712 Medical Center DriveRockville, MD 20850, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021032929","display_name":"Joshua Orvis","orcid":"https://orcid.org/0000-0002-5705-5710"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"J. Orvis","raw_affiliation_strings":["The Institute for Genomic Research, 9712 Medical Center DriveRockville, MD 20850, USA"],"affiliations":[{"raw_affiliation_string":"The Institute for Genomic Research, 9712 Medical Center DriveRockville, MD 20850, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019458580","display_name":"Brian J. Haas","orcid":"https://orcid.org/0000-0002-6609-4973"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"B. Haas","raw_affiliation_strings":["The Institute for Genomic Research, 9712 Medical Center DriveRockville, MD 20850, USA"],"affiliations":[{"raw_affiliation_string":"The Institute for Genomic Research, 9712 Medical Center DriveRockville, MD 20850, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022460492","display_name":"Jennifer R. Wortman","orcid":"https://orcid.org/0000-0002-8713-1227"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"J. Wortman","raw_affiliation_strings":["The Institute for Genomic Research, 9712 Medical Center DriveRockville, MD 20850, USA"],"affiliations":[{"raw_affiliation_string":"The Institute for Genomic Research, 9712 Medical Center DriveRockville, MD 20850, USA","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5045742761","display_name":"C. Robin Buell","orcid":"https://orcid.org/0000-0002-6727-4677"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"C. R. Buell","raw_affiliation_strings":["The Institute for Genomic Research, 9712 Medical Center DriveRockville, MD 20850, USA"],"affiliations":[{"raw_affiliation_string":"The Institute for Genomic Research, 9712 Medical Center DriveRockville, MD 20850, USA","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":14,"corresponding_author_ids":["https://openalex.org/A5050528031"],"corresponding_institution_ids":[],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":15.1205,"has_fulltext":false,"cited_by_count":1347,"citation_normalized_percentile":{"value":0.99563123,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"35","issue":"Database","first_page":"D883","last_page":"D887"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12858","display_name":"Plant Disease Resistance and Genetics","score":0.9898999929428101,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/transposable-element","display_name":"Transposable element","score":0.7628007531166077},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.7590669393539429},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.7375467419624329},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7217170000076294},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5317869186401367},{"id":"https://openalex.org/keywords/gene-annotation","display_name":"Gene Annotation","score":0.530183732509613},{"id":"https://openalex.org/keywords/genome-project","display_name":"Genome project","score":0.48849284648895264},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.48009946942329407},{"id":"https://openalex.org/keywords/genome-browser","display_name":"Genome browser","score":0.4710524082183838},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.44993898272514343},{"id":"https://openalex.org/keywords/reference-genome","display_name":"Reference genome","score":0.4451512098312378},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.36396628618240356}],"concepts":[{"id":"https://openalex.org/C4918238","wikidata":"https://www.wikidata.org/wiki/Q121438","display_name":"Transposable element","level":4,"score":0.7628007531166077},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.7590669393539429},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.7375467419624329},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7217170000076294},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5317869186401367},{"id":"https://openalex.org/C2908923196","wikidata":"https://www.wikidata.org/wiki/Q5205742","display_name":"Gene Annotation","level":4,"score":0.530183732509613},{"id":"https://openalex.org/C89566754","wikidata":"https://www.wikidata.org/wiki/Q2273828","display_name":"Genome project","level":4,"score":0.48849284648895264},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.48009946942329407},{"id":"https://openalex.org/C2781148417","wikidata":"https://www.wikidata.org/wiki/Q5533486","display_name":"Genome browser","level":5,"score":0.4710524082183838},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.44993898272514343},{"id":"https://openalex.org/C192953774","wikidata":"https://www.wikidata.org/wiki/Q7307127","display_name":"Reference genome","level":4,"score":0.4451512098312378},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.36396628618240356}],"mesh":[{"descriptor_ui":"D004251","descriptor_name":"DNA Transposable Elements","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004251","descriptor_name":"DNA Transposable Elements","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004251","descriptor_name":"DNA Transposable Elements","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012275","descriptor_name":"Oryza","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012275","descriptor_name":"Oryza","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012275","descriptor_name":"Oryza","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012275","descriptor_name":"Oryza","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012275","descriptor_name":"Oryza","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012275","descriptor_name":"Oryza","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018076","descriptor_name":"DNA, Complementary","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D018076","descriptor_name":"DNA, Complementary","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D018076","descriptor_name":"DNA, Complementary","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020224","descriptor_name":"Expressed Sequence Tags","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D020224","descriptor_name":"Expressed Sequence Tags","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D020224","descriptor_name":"Expressed Sequence Tags","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gkl976","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkl976","pdf_url":"https://academic.oup.com/nar/article-pdf/35/suppl_1/D883/3889570/gkl976.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:17145706","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17145706","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:europepmc.org:2284850","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/1751532","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:1751532","is_oa":true,"landing_page_url":"http://doi.org/10.1093/nar/gkl976","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkl976","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkl976","pdf_url":"https://academic.oup.com/nar/article-pdf/35/suppl_1/D883/3889570/gkl976.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320308380","display_name":"Yale University","ror":"https://ror.org/03v76x132"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2072285646.pdf","grobid_xml":"https://content.openalex.org/works/W2072285646.grobid-xml"},"referenced_works_count":32,"referenced_works":["https://openalex.org/W1496599646","https://openalex.org/W1573987240","https://openalex.org/W1613089286","https://openalex.org/W1968239742","https://openalex.org/W1983193571","https://openalex.org/W1991882465","https://openalex.org/W1992637372","https://openalex.org/W2031818334","https://openalex.org/W2062300017","https://openalex.org/W2071405543","https://openalex.org/W2092353808","https://openalex.org/W2098070331","https://openalex.org/W2098681555","https://openalex.org/W2099626126","https://openalex.org/W2101286315","https://openalex.org/W2109521781","https://openalex.org/W2118556605","https://openalex.org/W2130699672","https://openalex.org/W2134988768","https://openalex.org/W2141165178","https://openalex.org/W2142501720","https://openalex.org/W2144975794","https://openalex.org/W2145477956","https://openalex.org/W2149517531","https://openalex.org/W2156622081","https://openalex.org/W2157717230","https://openalex.org/W2157882076","https://openalex.org/W2159549123","https://openalex.org/W2167272207","https://openalex.org/W2169967113","https://openalex.org/W2175948239","https://openalex.org/W4235874578"],"related_works":["https://openalex.org/W3111061871","https://openalex.org/W2979252419","https://openalex.org/W3037487387","https://openalex.org/W3113162057","https://openalex.org/W2099626126","https://openalex.org/W1999129612","https://openalex.org/W4309908782","https://openalex.org/W2311275990","https://openalex.org/W2147163359","https://openalex.org/W2034579486"],"abstract_inverted_index":{"In":[0,30],"The":[1],"Institute":[2],"for":[3,67],"Genomic":[4],"Research":[5],"Rice":[6,126],"Genome":[7,127],"Annotation":[8],"project":[9],"(http://rice.tigr.org),":[10],"we":[11,41,91],"have":[12,42,62,92],"continued":[13],"to":[14,78,95,152],"update":[15],"the":[16,25,28,56,107,114],"rice":[17,115],"genome":[18],"sequence":[19],"with":[20],"new":[21],"data":[22,89,135],"and":[23,86,119,144],"improve":[24],"quality":[26],"of":[27,34,55,58,83,106],"annotation.":[29],"our":[31,64,125],"current":[32],"release":[33],"annotation":[35,121],"(Release":[36],"4.0;":[37],"January":[38],"12,":[39],"2006),":[40],"identified":[43],"42,653":[44],"non-transposable":[45],"element-related":[46,69],"genes":[47,70,74,99],"encoding":[48],"49,472":[49],"gene":[50,101,109],"models":[51],"as":[52,111],"a":[53,145],"result":[54],"detection":[57],"alternative":[59],"splicing.":[60],"We":[61],"refined":[63],"identification":[65],"methods":[66],"transposable":[68,79],"resulting":[71],"in":[72,113,150],"13,237":[73],"that":[75],"are":[76],"related":[77],"elements.":[80],"Through":[81],"incorporation":[82],"multiple":[84],"transcript":[85],"proteomic":[87],"expression":[88],"sets,":[90],"been":[93],"able":[94],"annotate":[96],"24":[97],"799":[98],"(31,739":[100],"models),":[102],"representing":[103],"approximately":[104],"50%":[105],"total":[108],"models,":[110],"expressed":[112],"genome.":[116],"All":[117],"structural":[118],"functional":[120],"is":[122,137],"viewable":[123],"through":[124,139],"Browser":[128],"which":[129],"currently":[130],"supports":[131],"59":[132],"tracks.":[133],"Enhanced":[134],"access":[136],"available":[138],"web":[140],"interfaces,":[141],"FTP":[142],"downloads":[143],"Data":[146],"Extractor":[147],"tool":[148],"developed":[149],"order":[151],"support":[153],"discrete":[154],"dataset":[155],"downloads.":[156]},"counts_by_year":[{"year":2026,"cited_by_count":14},{"year":2025,"cited_by_count":56},{"year":2024,"cited_by_count":136},{"year":2023,"cited_by_count":69},{"year":2022,"cited_by_count":100},{"year":2021,"cited_by_count":112},{"year":2020,"cited_by_count":60},{"year":2019,"cited_by_count":52},{"year":2018,"cited_by_count":37},{"year":2017,"cited_by_count":54},{"year":2016,"cited_by_count":72},{"year":2015,"cited_by_count":64},{"year":2014,"cited_by_count":68},{"year":2013,"cited_by_count":95},{"year":2012,"cited_by_count":104}],"updated_date":"2026-04-09T08:11:56.329763","created_date":"2025-10-10T00:00:00"}