{"id":"https://openalex.org/W2141626941","doi":"https://doi.org/10.1093/nar/gkl947","title":"The National Microbial Pathogen Database Resource (NMPDR): a genomics platform based on subsystem annotation","display_name":"The National Microbial Pathogen Database Resource (NMPDR): a genomics platform based on subsystem annotation","publication_year":2006,"publication_date":"2006-12-03","ids":{"openalex":"https://openalex.org/W2141626941","doi":"https://doi.org/10.1093/nar/gkl947","mag":"2141626941"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkl947","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkl947","pdf_url":"https://academic.oup.com/nar/article-pdf/35/suppl_1/D347/3883357/gkl947.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/35/suppl_1/D347/3883357/gkl947.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5109047938","display_name":"Leslie Klis McNeil","orcid":null},"institutions":[{"id":"https://openalex.org/I19908199","display_name":"National Center for Supercomputing Applications","ror":"https://ror.org/03g9ch715","country_code":"BG","type":"facility","lineage":["https://openalex.org/I19908199"]},{"id":"https://openalex.org/I4210135837","display_name":"National Center for Supercomputing Applications","ror":"https://ror.org/03r10zj06","country_code":"US","type":"facility","lineage":["https://openalex.org/I157725225","https://openalex.org/I4210135837"]}],"countries":["BG","US"],"is_corresponding":true,"raw_author_name":"L. K. McNeil","raw_affiliation_strings":["National Center for Supercomputing Applications and","National Center for Supercomputing ApplicationsUrbana, IL 61801, USA"],"affiliations":[{"raw_affiliation_string":"National Center for Supercomputing Applications and","institution_ids":["https://openalex.org/I19908199"]},{"raw_affiliation_string":"National Center for Supercomputing ApplicationsUrbana, IL 61801, USA","institution_ids":["https://openalex.org/I4210135837"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007308175","display_name":"Claudia I. Reich","orcid":null},"institutions":[{"id":"https://openalex.org/I157725225","display_name":"University of Illinois Urbana-Champaign","ror":"https://ror.org/047426m28","country_code":"US","type":"education","lineage":["https://openalex.org/I157725225"]},{"id":"https://openalex.org/I19908199","display_name":"National Center for Supercomputing Applications","ror":"https://ror.org/03g9ch715","country_code":"BG","type":"facility","lineage":["https://openalex.org/I19908199"]},{"id":"https://openalex.org/I4210135837","display_name":"National Center for Supercomputing Applications","ror":"https://ror.org/03r10zj06","country_code":"US","type":"facility","lineage":["https://openalex.org/I157725225","https://openalex.org/I4210135837"]}],"countries":["BG","US"],"is_corresponding":false,"raw_author_name":"C. Reich","raw_affiliation_strings":["Department of Microbiology, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA,","National Center for Supercomputing Applications and","National Center for Supercomputing ApplicationsUrbana, IL 61801, USA","Department of Microbiology, University of Illinois at Urbana-ChampaignUrbana, IL 61801, USA"],"affiliations":[{"raw_affiliation_string":"Department of Microbiology, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA,","institution_ids":["https://openalex.org/I157725225"]},{"raw_affiliation_string":"National Center for Supercomputing Applications and","institution_ids":["https://openalex.org/I19908199"]},{"raw_affiliation_string":"National Center for Supercomputing ApplicationsUrbana, IL 61801, USA","institution_ids":["https://openalex.org/I4210135837"]},{"raw_affiliation_string":"Department of Microbiology, University of Illinois at Urbana-ChampaignUrbana, IL 61801, USA","institution_ids":["https://openalex.org/I157725225"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077224913","display_name":"Ramy K. Aziz","orcid":"https://orcid.org/0000-0002-4448-7100"},"institutions":[{"id":"https://openalex.org/I145487455","display_name":"Cairo University","ror":"https://ror.org/03q21mh05","country_code":"EG","type":"education","lineage":["https://openalex.org/I145487455"]}],"countries":["EG"],"is_corresponding":false,"raw_author_name":"R. K. Aziz","raw_affiliation_strings":["Department of Microbiology and Immunology, College of Pharmacy, Cairo University, Cairo, Egypt,","Department of Microbiology and Immunology, College of Pharmacy, Cairo UniversityCairo, Egypt"],"affiliations":[{"raw_affiliation_string":"Department of Microbiology and Immunology, College of Pharmacy, Cairo University, Cairo, Egypt,","institution_ids":["https://openalex.org/I145487455"]},{"raw_affiliation_string":"Department of Microbiology and Immunology, College of Pharmacy, Cairo UniversityCairo, Egypt","institution_ids":["https://openalex.org/I145487455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076164536","display_name":"Daniela Bartels","orcid":null},"institutions":[{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"D. Bartels","raw_affiliation_strings":["Computation Institute, University of Chicago, Chicago, IL 60637, USA,","Computation Institute, University of ChicagoChicago, IL 60637, USA"],"affiliations":[{"raw_affiliation_string":"Computation Institute, University of Chicago, Chicago, IL 60637, USA,","institution_ids":["https://openalex.org/I40347166"]},{"raw_affiliation_string":"Computation Institute, University of ChicagoChicago, IL 60637, USA","institution_ids":["https://openalex.org/I40347166"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075474248","display_name":"Matthew Cohoon","orcid":null},"institutions":[{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"M. Cohoon","raw_affiliation_strings":["Computation Institute, University of Chicago, Chicago, IL 60637, USA,","Computation Institute, University of ChicagoChicago, IL 60637, USA"],"affiliations":[{"raw_affiliation_string":"Computation Institute, University of Chicago, Chicago, IL 60637, USA,","institution_ids":["https://openalex.org/I40347166"]},{"raw_affiliation_string":"Computation Institute, University of ChicagoChicago, IL 60637, USA","institution_ids":["https://openalex.org/I40347166"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111540751","display_name":"T. Disz","orcid":null},"institutions":[{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"T. Disz","raw_affiliation_strings":["Computation Institute, University of Chicago, Chicago, IL 60637, USA,","Computation Institute, University of ChicagoChicago, IL 60637, USA"],"affiliations":[{"raw_affiliation_string":"Computation Institute, University of Chicago, Chicago, IL 60637, USA,","institution_ids":["https://openalex.org/I40347166"]},{"raw_affiliation_string":"Computation Institute, University of ChicagoChicago, IL 60637, USA","institution_ids":["https://openalex.org/I40347166"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036802114","display_name":"Robert A. Edwards","orcid":"https://orcid.org/0000-0001-8383-8949"},"institutions":[{"id":"https://openalex.org/I188891513","display_name":"Sanford Burnham Prebys Medical Discovery Institute","ror":"https://ror.org/03m1g2s55","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I188891513"]},{"id":"https://openalex.org/I26538001","display_name":"San Diego State University","ror":"https://ror.org/0264fdx42","country_code":"US","type":"education","lineage":["https://openalex.org/I26538001"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"R. A. Edwards","raw_affiliation_strings":["The Burnham Institute, San DiegoCA 92037, USA","San Diego State University, San DiegoCA 92182, USA","Fellowship for Interpretation of Genomes, Burr RidgeIL 60527, USA"],"affiliations":[{"raw_affiliation_string":"The Burnham Institute, San DiegoCA 92037, USA","institution_ids":["https://openalex.org/I188891513"]},{"raw_affiliation_string":"San Diego State University, San DiegoCA 92182, USA","institution_ids":["https://openalex.org/I26538001"]},{"raw_affiliation_string":"Fellowship for Interpretation of Genomes, Burr RidgeIL 60527, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054837516","display_name":"Svetlana Gerdes","orcid":"https://orcid.org/0000-0001-5472-2912"},"institutions":[{"id":"https://openalex.org/I4210124484","display_name":"Directorate-General for Interpretation","ror":"https://ror.org/03728bb41","country_code":"BE","type":"government","lineage":["https://openalex.org/I1320481043","https://openalex.org/I2800387288","https://openalex.org/I4210124484"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"S. Gerdes","raw_affiliation_strings":["Fellowship for Interpretation of Genomes, Burr Ridge, IL 60527, USA,","Fellowship for Interpretation of Genomes, Burr RidgeIL 60527, USA"],"affiliations":[{"raw_affiliation_string":"Fellowship for Interpretation of Genomes, Burr Ridge, IL 60527, USA,","institution_ids":["https://openalex.org/I4210124484"]},{"raw_affiliation_string":"Fellowship for Interpretation of Genomes, Burr RidgeIL 60527, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024714993","display_name":"Kwang Woo Hwang","orcid":"https://orcid.org/0000-0003-3165-0260"},"institutions":[{"id":"https://openalex.org/I1282105669","display_name":"Argonne National Laboratory","ror":"https://ror.org/05gvnxz63","country_code":"US","type":"facility","lineage":["https://openalex.org/I1282105669","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I40347166"]},{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"K. Hwang","raw_affiliation_strings":["Computation Institute, University of Chicago, Chicago, IL 60637, USA,","Mathematics and Computer Science Division, Argonne National Laboratory, Argonne, IL 60439, USA and","Mathematics and Computer Science Division, Argonne National LaboratoryArgonne, IL 60439, USA","Computation Institute, University of ChicagoChicago, IL 60637, USA"],"affiliations":[{"raw_affiliation_string":"Computation Institute, University of Chicago, Chicago, IL 60637, USA,","institution_ids":["https://openalex.org/I40347166"]},{"raw_affiliation_string":"Mathematics and Computer Science Division, Argonne National Laboratory, Argonne, IL 60439, USA and","institution_ids":["https://openalex.org/I1282105669"]},{"raw_affiliation_string":"Mathematics and Computer Science Division, Argonne National LaboratoryArgonne, IL 60439, USA","institution_ids":["https://openalex.org/I1282105669"]},{"raw_affiliation_string":"Computation Institute, University of ChicagoChicago, IL 60637, USA","institution_ids":["https://openalex.org/I40347166"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006377909","display_name":"Michael Kubal","orcid":null},"institutions":[{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"M. Kubal","raw_affiliation_strings":["Computation Institute, University of Chicago, Chicago, IL 60637, USA,","Computation Institute, University of ChicagoChicago, IL 60637, USA"],"affiliations":[{"raw_affiliation_string":"Computation Institute, University of Chicago, Chicago, IL 60637, USA,","institution_ids":["https://openalex.org/I40347166"]},{"raw_affiliation_string":"Computation Institute, University of ChicagoChicago, IL 60637, USA","institution_ids":["https://openalex.org/I40347166"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103329044","display_name":"Gohar Rem Margaryan","orcid":null},"institutions":[{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"G. R. Margaryan","raw_affiliation_strings":["Computation Institute, University of ChicagoChicago, IL 60637, USA"],"affiliations":[{"raw_affiliation_string":"Computation Institute, University of ChicagoChicago, IL 60637, USA","institution_ids":["https://openalex.org/I40347166"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086419862","display_name":"Folker Meyer","orcid":"https://orcid.org/0000-0003-1112-2284"},"institutions":[{"id":"https://openalex.org/I1282105669","display_name":"Argonne National Laboratory","ror":"https://ror.org/05gvnxz63","country_code":"US","type":"facility","lineage":["https://openalex.org/I1282105669","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I40347166"]},{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"F. Meyer","raw_affiliation_strings":["Computation Institute, University of Chicago, Chicago, IL 60637, USA,","Mathematics and Computer Science Division, Argonne National Laboratory, Argonne, IL 60439, USA and","Computation Institute, University of ChicagoChicago, IL 60637, USA","Mathematics and Computer Science Division, Argonne National LaboratoryArgonne, IL 60439, USA"],"affiliations":[{"raw_affiliation_string":"Computation Institute, University of Chicago, Chicago, IL 60637, USA,","institution_ids":["https://openalex.org/I40347166"]},{"raw_affiliation_string":"Mathematics and Computer Science Division, Argonne National Laboratory, Argonne, IL 60439, USA and","institution_ids":["https://openalex.org/I1282105669"]},{"raw_affiliation_string":"Computation Institute, University of ChicagoChicago, IL 60637, USA","institution_ids":["https://openalex.org/I40347166"]},{"raw_affiliation_string":"Mathematics and Computer Science Division, Argonne National LaboratoryArgonne, IL 60439, USA","institution_ids":["https://openalex.org/I1282105669"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5098635841","display_name":"W. Mihalo","orcid":null},"institutions":[{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"W. Mihalo","raw_affiliation_strings":["Computation Institute, University of Chicago, Chicago, IL 60637, USA,","Computation Institute, University of ChicagoChicago, IL 60637, USA"],"affiliations":[{"raw_affiliation_string":"Computation Institute, University of Chicago, Chicago, IL 60637, USA,","institution_ids":["https://openalex.org/I40347166"]},{"raw_affiliation_string":"Computation Institute, University of ChicagoChicago, IL 60637, USA","institution_ids":["https://openalex.org/I40347166"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079689878","display_name":"G. J. Olsen","orcid":null},"institutions":[{"id":"https://openalex.org/I157725225","display_name":"University of Illinois Urbana-Champaign","ror":"https://ror.org/047426m28","country_code":"US","type":"education","lineage":["https://openalex.org/I157725225"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"G. J. Olsen","raw_affiliation_strings":["Department of Microbiology, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA,","Department of Microbiology, University of Illinois at Urbana-ChampaignUrbana, IL 61801, USA"],"affiliations":[{"raw_affiliation_string":"Department of Microbiology, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA,","institution_ids":["https://openalex.org/I157725225"]},{"raw_affiliation_string":"Department of Microbiology, University of Illinois at Urbana-ChampaignUrbana, IL 61801, USA","institution_ids":["https://openalex.org/I157725225"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015210172","display_name":"Robert Olson","orcid":"https://orcid.org/0000-0001-9751-4734"},"institutions":[{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"R. Olson","raw_affiliation_strings":["Computation Institute, University of Chicago, Chicago, IL 60637, USA,","Computation Institute, University of ChicagoChicago, IL 60637, USA"],"affiliations":[{"raw_affiliation_string":"Computation Institute, University of Chicago, Chicago, IL 60637, USA,","institution_ids":["https://openalex.org/I40347166"]},{"raw_affiliation_string":"Computation Institute, University of ChicagoChicago, IL 60637, USA","institution_ids":["https://openalex.org/I40347166"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076369332","display_name":"A.L. Osterman","orcid":null},"institutions":[{"id":"https://openalex.org/I188891513","display_name":"Sanford Burnham Prebys Medical Discovery Institute","ror":"https://ror.org/03m1g2s55","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I188891513"]},{"id":"https://openalex.org/I4210124484","display_name":"Directorate-General for Interpretation","ror":"https://ror.org/03728bb41","country_code":"BE","type":"government","lineage":["https://openalex.org/I1320481043","https://openalex.org/I2800387288","https://openalex.org/I4210124484"]}],"countries":["BE","US"],"is_corresponding":false,"raw_author_name":"A. Osterman","raw_affiliation_strings":["Fellowship for Interpretation of Genomes, Burr Ridge, IL 60527, USA,","The Burnham Institute, San Diego, CA 92037, USA,","Fellowship for Interpretation of Genomes, Burr RidgeIL 60527, USA","The Burnham Institute, San DiegoCA 92037, USA"],"affiliations":[{"raw_affiliation_string":"Fellowship for Interpretation of Genomes, Burr Ridge, IL 60527, USA,","institution_ids":["https://openalex.org/I4210124484"]},{"raw_affiliation_string":"The Burnham Institute, San Diego, CA 92037, USA,","institution_ids":["https://openalex.org/I188891513"]},{"raw_affiliation_string":"Fellowship for Interpretation of Genomes, Burr RidgeIL 60527, USA","institution_ids":[]},{"raw_affiliation_string":"The Burnham Institute, San DiegoCA 92037, USA","institution_ids":["https://openalex.org/I188891513"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052177616","display_name":"Daniel Paarmann","orcid":null},"institutions":[{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"D. Paarmann","raw_affiliation_strings":["Computation Institute, University of Chicago, Chicago, IL 60637, USA,","Computation Institute, University of ChicagoChicago, IL 60637, USA"],"affiliations":[{"raw_affiliation_string":"Computation Institute, University of Chicago, Chicago, IL 60637, USA,","institution_ids":["https://openalex.org/I40347166"]},{"raw_affiliation_string":"Computation Institute, University of ChicagoChicago, IL 60637, USA","institution_ids":["https://openalex.org/I40347166"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029013346","display_name":"Tobias Paczian","orcid":null},"institutions":[{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"T. Paczian","raw_affiliation_strings":["Computation Institute, University of Chicago, Chicago, IL 60637, USA,","Computation Institute, University of ChicagoChicago, IL 60637, USA"],"affiliations":[{"raw_affiliation_string":"Computation Institute, University of Chicago, Chicago, IL 60637, USA,","institution_ids":["https://openalex.org/I40347166"]},{"raw_affiliation_string":"Computation Institute, University of ChicagoChicago, IL 60637, USA","institution_ids":["https://openalex.org/I40347166"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026370684","display_name":"Bruce Parrello","orcid":null},"institutions":[{"id":"https://openalex.org/I4210124484","display_name":"Directorate-General for Interpretation","ror":"https://ror.org/03728bb41","country_code":"BE","type":"government","lineage":["https://openalex.org/I1320481043","https://openalex.org/I2800387288","https://openalex.org/I4210124484"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"B. Parrello","raw_affiliation_strings":["Fellowship for Interpretation of Genomes, Burr Ridge, IL 60527, USA,","Fellowship for Interpretation of Genomes, Burr RidgeIL 60527, USA"],"affiliations":[{"raw_affiliation_string":"Fellowship for Interpretation of Genomes, Burr Ridge, IL 60527, USA,","institution_ids":["https://openalex.org/I4210124484"]},{"raw_affiliation_string":"Fellowship for Interpretation of Genomes, Burr RidgeIL 60527, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066616906","display_name":"Gordon D. Pusch","orcid":"https://orcid.org/0000-0003-1471-0401"},"institutions":[{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]},{"id":"https://openalex.org/I4210124484","display_name":"Directorate-General for Interpretation","ror":"https://ror.org/03728bb41","country_code":"BE","type":"government","lineage":["https://openalex.org/I1320481043","https://openalex.org/I2800387288","https://openalex.org/I4210124484"]}],"countries":["BE","US"],"is_corresponding":false,"raw_author_name":"G. D. Pusch","raw_affiliation_strings":["Computation Institute, University of Chicago, Chicago, IL 60637, USA,","Fellowship for Interpretation of Genomes, Burr Ridge, IL 60527, USA,","Computation Institute, University of ChicagoChicago, IL 60637, USA","Fellowship for Interpretation of Genomes, Burr RidgeIL 60527, USA"],"affiliations":[{"raw_affiliation_string":"Computation Institute, University of Chicago, Chicago, IL 60637, USA,","institution_ids":["https://openalex.org/I40347166"]},{"raw_affiliation_string":"Fellowship for Interpretation of Genomes, Burr Ridge, IL 60527, USA,","institution_ids":["https://openalex.org/I4210124484"]},{"raw_affiliation_string":"Computation Institute, University of ChicagoChicago, IL 60637, USA","institution_ids":["https://openalex.org/I40347166"]},{"raw_affiliation_string":"Fellowship for Interpretation of Genomes, Burr RidgeIL 60527, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041084611","display_name":"Dmitry A. Rodionov","orcid":"https://orcid.org/0000-0002-0939-390X"},"institutions":[{"id":"https://openalex.org/I188891513","display_name":"Sanford Burnham Prebys Medical Discovery Institute","ror":"https://ror.org/03m1g2s55","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I188891513"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"D. A. Rodionov","raw_affiliation_strings":["The Burnham Institute, San Diego, CA 92037, USA,","The Burnham Institute, San DiegoCA 92037, USA"],"affiliations":[{"raw_affiliation_string":"The Burnham Institute, San Diego, CA 92037, USA,","institution_ids":["https://openalex.org/I188891513"]},{"raw_affiliation_string":"The Burnham Institute, San DiegoCA 92037, USA","institution_ids":["https://openalex.org/I188891513"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101569399","display_name":"Xiaofeng Shi","orcid":"https://orcid.org/0000-0003-1484-4426"},"institutions":[{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"X. Shi","raw_affiliation_strings":["Computation Institute, University of Chicago, Chicago, IL 60637, USA,","Computation Institute, University of ChicagoChicago, IL 60637, USA"],"affiliations":[{"raw_affiliation_string":"Computation Institute, University of Chicago, Chicago, IL 60637, USA,","institution_ids":["https://openalex.org/I40347166"]},{"raw_affiliation_string":"Computation Institute, University of ChicagoChicago, IL 60637, USA","institution_ids":["https://openalex.org/I40347166"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004978760","display_name":"Olga Vassieva","orcid":null},"institutions":[{"id":"https://openalex.org/I177639307","display_name":"University of Dundee","ror":"https://ror.org/03h2bxq36","country_code":"GB","type":"education","lineage":["https://openalex.org/I177639307"]},{"id":"https://openalex.org/I4210124484","display_name":"Directorate-General for Interpretation","ror":"https://ror.org/03728bb41","country_code":"BE","type":"government","lineage":["https://openalex.org/I1320481043","https://openalex.org/I2800387288","https://openalex.org/I4210124484"]}],"countries":["BE","GB"],"is_corresponding":false,"raw_author_name":"O. Vassieva","raw_affiliation_strings":["Biomedical Research Centre, University of Dundee, Dundee DD14HN UK","Fellowship for Interpretation of Genomes, Burr Ridge, IL 60527, USA,","Fellowship for Interpretation of Genomes, Burr RidgeIL 60527, USA","Biomedical Research Centre, University of DundeeDundee DD14HN UK"],"affiliations":[{"raw_affiliation_string":"Biomedical Research Centre, University of Dundee, Dundee DD14HN UK","institution_ids":["https://openalex.org/I177639307"]},{"raw_affiliation_string":"Fellowship for Interpretation of Genomes, Burr Ridge, IL 60527, USA,","institution_ids":["https://openalex.org/I4210124484"]},{"raw_affiliation_string":"Fellowship for Interpretation of Genomes, Burr RidgeIL 60527, USA","institution_ids":[]},{"raw_affiliation_string":"Biomedical Research Centre, University of DundeeDundee DD14HN UK","institution_ids":["https://openalex.org/I177639307"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036781580","display_name":"Veronika Vonstein","orcid":null},"institutions":[{"id":"https://openalex.org/I4210124484","display_name":"Directorate-General for Interpretation","ror":"https://ror.org/03728bb41","country_code":"BE","type":"government","lineage":["https://openalex.org/I1320481043","https://openalex.org/I2800387288","https://openalex.org/I4210124484"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"V. Vonstein","raw_affiliation_strings":["Fellowship for Interpretation of Genomes, Burr Ridge, IL 60527, USA,","Fellowship for Interpretation of Genomes, Burr RidgeIL 60527, USA"],"affiliations":[{"raw_affiliation_string":"Fellowship for Interpretation of Genomes, Burr Ridge, IL 60527, USA,","institution_ids":["https://openalex.org/I4210124484"]},{"raw_affiliation_string":"Fellowship for Interpretation of Genomes, Burr RidgeIL 60527, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019530454","display_name":"Olga Zagnitko","orcid":null},"institutions":[{"id":"https://openalex.org/I4210124484","display_name":"Directorate-General for Interpretation","ror":"https://ror.org/03728bb41","country_code":"BE","type":"government","lineage":["https://openalex.org/I1320481043","https://openalex.org/I2800387288","https://openalex.org/I4210124484"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"O. Zagnitko","raw_affiliation_strings":["Fellowship for Interpretation of Genomes, Burr Ridge, IL 60527, USA,","Fellowship for Interpretation of Genomes, Burr RidgeIL 60527, USA"],"affiliations":[{"raw_affiliation_string":"Fellowship for Interpretation of Genomes, Burr Ridge, IL 60527, USA,","institution_ids":["https://openalex.org/I4210124484"]},{"raw_affiliation_string":"Fellowship for Interpretation of Genomes, Burr RidgeIL 60527, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100781183","display_name":"Fang Xia","orcid":"https://orcid.org/0000-0002-0676-8606"},"institutions":[{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"F. Xia","raw_affiliation_strings":["Computation Institute, University of Chicago, Chicago, IL 60637, USA,","Computation Institute, University of ChicagoChicago, IL 60637, USA"],"affiliations":[{"raw_affiliation_string":"Computation Institute, University of Chicago, Chicago, IL 60637, USA,","institution_ids":["https://openalex.org/I40347166"]},{"raw_affiliation_string":"Computation Institute, University of ChicagoChicago, IL 60637, USA","institution_ids":["https://openalex.org/I40347166"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065160081","display_name":"J. Zinner","orcid":null},"institutions":[{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"J. Zinner","raw_affiliation_strings":["Computation Institute, University of Chicago, Chicago, IL 60637, USA,","Computation Institute, University of ChicagoChicago, IL 60637, USA"],"affiliations":[{"raw_affiliation_string":"Computation Institute, University of Chicago, Chicago, IL 60637, USA,","institution_ids":["https://openalex.org/I40347166"]},{"raw_affiliation_string":"Computation Institute, University of ChicagoChicago, IL 60637, USA","institution_ids":["https://openalex.org/I40347166"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085138988","display_name":"Ross Overbeek","orcid":null},"institutions":[{"id":"https://openalex.org/I4210124484","display_name":"Directorate-General for Interpretation","ror":"https://ror.org/03728bb41","country_code":"BE","type":"government","lineage":["https://openalex.org/I1320481043","https://openalex.org/I2800387288","https://openalex.org/I4210124484"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"R. Overbeek","raw_affiliation_strings":["Fellowship for Interpretation of Genomes, Burr Ridge, IL 60527, USA,","Fellowship for Interpretation of Genomes, Burr RidgeIL 60527, USA"],"affiliations":[{"raw_affiliation_string":"Fellowship for Interpretation of Genomes, Burr Ridge, IL 60527, USA,","institution_ids":["https://openalex.org/I4210124484"]},{"raw_affiliation_string":"Fellowship for Interpretation of Genomes, Burr RidgeIL 60527, USA","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5053682943","display_name":"Rick Stevens","orcid":"https://orcid.org/0000-0002-4268-4020"},"institutions":[{"id":"https://openalex.org/I1282105669","display_name":"Argonne National Laboratory","ror":"https://ror.org/05gvnxz63","country_code":"US","type":"facility","lineage":["https://openalex.org/I1282105669","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I40347166"]},{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"R. Stevens","raw_affiliation_strings":["Computation Institute, University of Chicago, Chicago, IL 60637, USA,","Mathematics and Computer Science Division, Argonne National Laboratory, Argonne, IL 60439, USA and","Computation Institute, University of ChicagoChicago, IL 60637, USA","Mathematics and Computer Science Division, Argonne National LaboratoryArgonne, IL 60439, USA"],"affiliations":[{"raw_affiliation_string":"Computation Institute, University of Chicago, Chicago, IL 60637, USA,","institution_ids":["https://openalex.org/I40347166"]},{"raw_affiliation_string":"Mathematics and Computer Science Division, Argonne National Laboratory, Argonne, IL 60439, USA and","institution_ids":["https://openalex.org/I1282105669"]},{"raw_affiliation_string":"Computation Institute, University of ChicagoChicago, IL 60637, USA","institution_ids":["https://openalex.org/I40347166"]},{"raw_affiliation_string":"Mathematics and Computer Science Division, Argonne National LaboratoryArgonne, IL 60439, USA","institution_ids":["https://openalex.org/I1282105669"]}]}],"institutions":[],"countries_distinct_count":5,"institutions_distinct_count":29,"corresponding_author_ids":["https://openalex.org/A5109047938"],"corresponding_institution_ids":["https://openalex.org/I19908199","https://openalex.org/I4210135837"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":5.8575,"has_fulltext":true,"cited_by_count":106,"citation_normalized_percentile":{"value":0.96999056,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"35","issue":"Database","first_page":"D347","last_page":"D353"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10252","display_name":"Microbial Natural Products and Biosynthesis","score":0.9955999851226807,"subfield":{"id":"https://openalex.org/subfields/2736","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10120","display_name":"Bacterial Genetics and Biotechnology","score":0.9950000047683716,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.7436966300010681},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.7205443382263184},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.6848970651626587},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6619049310684204},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.6205813884735107},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5861532092094421},{"id":"https://openalex.org/keywords/web-resource","display_name":"Web resource","score":0.5489745736122131},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.5459411144256592},{"id":"https://openalex.org/keywords/resource","display_name":"Resource (disambiguation)","score":0.5125998854637146},{"id":"https://openalex.org/keywords/in-silico","display_name":"In silico","score":0.4844248592853546},{"id":"https://openalex.org/keywords/comparative-genomics","display_name":"Comparative genomics","score":0.48351219296455383},{"id":"https://openalex.org/keywords/genome-browser","display_name":"Genome browser","score":0.45435017347335815},{"id":"https://openalex.org/keywords/functional-genomics","display_name":"Functional genomics","score":0.42840316891670227},{"id":"https://openalex.org/keywords/bacterial-genome-size","display_name":"Bacterial genome size","score":0.42121466994285583},{"id":"https://openalex.org/keywords/gene-annotation","display_name":"Gene Annotation","score":0.42104193568229675},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.31953370571136475},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3010326623916626},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.25438034534454346},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.1958862543106079}],"concepts":[{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.7436966300010681},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.7205443382263184},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.6848970651626587},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6619049310684204},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.6205813884735107},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5861532092094421},{"id":"https://openalex.org/C65603577","wikidata":"https://www.wikidata.org/wiki/Q3427877","display_name":"Web resource","level":2,"score":0.5489745736122131},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.5459411144256592},{"id":"https://openalex.org/C206345919","wikidata":"https://www.wikidata.org/wiki/Q20380951","display_name":"Resource (disambiguation)","level":2,"score":0.5125998854637146},{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.4844248592853546},{"id":"https://openalex.org/C105176652","wikidata":"https://www.wikidata.org/wiki/Q1147112","display_name":"Comparative genomics","level":5,"score":0.48351219296455383},{"id":"https://openalex.org/C2781148417","wikidata":"https://www.wikidata.org/wiki/Q5533486","display_name":"Genome browser","level":5,"score":0.45435017347335815},{"id":"https://openalex.org/C161078062","wikidata":"https://www.wikidata.org/wiki/Q1068690","display_name":"Functional genomics","level":5,"score":0.42840316891670227},{"id":"https://openalex.org/C3742359","wikidata":"https://www.wikidata.org/wiki/Q4839988","display_name":"Bacterial genome size","level":4,"score":0.42121466994285583},{"id":"https://openalex.org/C2908923196","wikidata":"https://www.wikidata.org/wiki/Q5205742","display_name":"Gene Annotation","level":4,"score":0.42104193568229675},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.31953370571136475},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3010326623916626},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.25438034534454346},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.1958862543106079},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gkl947","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkl947","pdf_url":"https://academic.oup.com/nar/article-pdf/35/suppl_1/D347/3883357/gkl947.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmh:oai:europepmc.org:2284858","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/1751540","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:1751540","is_oa":true,"landing_page_url":"http://doi.org/10.1093/nar/gkl947","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkl947","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkl947","pdf_url":"https://academic.oup.com/nar/article-pdf/35/suppl_1/D347/3883357/gkl947.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G5903061775","display_name":null,"funder_award_id":"NIAID","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7581547835","display_name":null,"funder_award_id":"HHSN266200400042C","funder_id":"https://openalex.org/F4320337355","funder_display_name":"National Institute of Allergy and Infectious Diseases"}],"funders":[{"id":"https://openalex.org/F4320306085","display_name":"U.S. Department of Health and Human Services","ror":"https://ror.org/033jnv181"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337355","display_name":"National Institute of Allergy and Infectious Diseases","ror":"https://ror.org/043z4tv69"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2141626941.pdf","grobid_xml":"https://content.openalex.org/works/W2141626941.grobid-xml"},"referenced_works_count":24,"referenced_works":["https://openalex.org/W205578041","https://openalex.org/W1582212884","https://openalex.org/W1956774563","https://openalex.org/W1966711026","https://openalex.org/W1982440567","https://openalex.org/W1995117714","https://openalex.org/W2040226264","https://openalex.org/W2055043387","https://openalex.org/W2079048673","https://openalex.org/W2106882534","https://openalex.org/W2107903949","https://openalex.org/W2111373249","https://openalex.org/W2114034054","https://openalex.org/W2124165983","https://openalex.org/W2130479394","https://openalex.org/W2141885858","https://openalex.org/W2142237411","https://openalex.org/W2145477956","https://openalex.org/W2148853951","https://openalex.org/W2154202919","https://openalex.org/W2158714788","https://openalex.org/W2161732286","https://openalex.org/W4210400672","https://openalex.org/W4230932396"],"related_works":["https://openalex.org/W2161069068","https://openalex.org/W3109437984","https://openalex.org/W2076485048","https://openalex.org/W1972257067","https://openalex.org/W2152320398","https://openalex.org/W2137839422","https://openalex.org/W2150533177","https://openalex.org/W4238306487","https://openalex.org/W2396992196","https://openalex.org/W2042690128"],"abstract_inverted_index":{"in":[0,87,132,151,174,179],"selected":[1],"Category":[2],"B":[3],"pathogens.":[4],"NMPDR":[5,42,110,140],"contains":[6],"the":[7,18,38,54,103,147],"complete":[8],"genomes":[9,28,46],"of":[10,13,20,62,78,102,106,124,149,158],"$50":[11],"strains":[12],"pathogenic":[14],"bacteria":[15],"that":[16,29,154],"are":[17,60,73,178],"focus":[19],"our":[21],"curators,":[22],"as":[23,25],"well":[24],">400":[26],"other":[27],"provide":[30,53,81],"a":[31,67,88,112],"broad":[32],"context":[33],"for":[34,120],"comparative":[35],"analysis":[36],"across":[37],"three":[39],"phylogenetic":[40],"Domains.":[41],"integrates":[43],"complete,":[44],"public":[45],"with":[47,83,116,137],"expertly":[48],"curated":[49],"biological":[50],"subsystems":[51,95],"to":[52,98],"most":[55],"consistent":[56,84],"genome":[57,121],"annotations.":[58],"Subsystems":[59],"sets":[61],"functional":[63,85],"roles":[64],"related":[65],"by":[66],"biologically":[68,89],"meaningful":[69],"organizing":[70],"principle,":[71],"which":[72,145],"built":[74],"over":[75],"large":[76],"collections":[77],"genomes;":[79],"they":[80],"researchers":[82],"assignments":[86],"structured":[90],"context.":[91],"Investigators":[92],"can":[93,129],"browse":[94],"and":[96,118,172],"reactions":[97],"develop":[99],"accurate":[100],"reconstructions":[101],"metabolic":[104],"networks":[105],"any":[107],"sequenced":[108],"organism.":[109],"provides":[111],"comprehensive":[113],"bioinformatics":[114],"platform,":[115],"tools":[117,141],"viewers":[119],"analysis.":[122],"Results":[123],"precomputed":[125],"gene":[126],"clustering":[127],"analyses":[128],"be":[130],"retrieved":[131],"tabular":[133],"or":[134,153],"graphic":[135],"format":[136],"one-click":[138],"tools.":[139],"include":[142],"Signature":[143],"Genes,":[144],"finds":[146],"set":[148],"genes":[150],"common":[152],"differentiates":[155],"two":[156],"groups":[157],"organisms.":[159],"Essentiality":[160],"data":[161],"collated":[162],"from":[163],"genome-wide":[164],"studies":[165],"have":[166],"been":[167],"curated.":[168],"Drug":[169],"target":[170],"identification":[171],"high-throughput,":[173],"silico,":[175],"compound":[176],"screening":[177],"development.":[180]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":3},{"year":2019,"cited_by_count":5},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":5},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":5},{"year":2012,"cited_by_count":6}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
