{"id":"https://openalex.org/W2121001818","doi":"https://doi.org/10.1093/nar/gkl936","title":"AgBase: a unified resource for functional analysis in agriculture","display_name":"AgBase: a unified resource for functional analysis in agriculture","publication_year":2006,"publication_date":"2006-11-30","ids":{"openalex":"https://openalex.org/W2121001818","doi":"https://doi.org/10.1093/nar/gkl936","mag":"2121001818","pmid":"https://pubmed.ncbi.nlm.nih.gov/17135208"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkl936","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkl936","pdf_url":"https://academic.oup.com/nar/article-pdf/35/suppl_1/D599/3879610/gkl936.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/35/suppl_1/D599/3879610/gkl936.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5089552380","display_name":"Fiona McCarthy","orcid":"https://orcid.org/0000-0003-2175-5464"},"institutions":[{"id":"https://openalex.org/I99041443","display_name":"Mississippi State University","ror":"https://ror.org/0432jq872","country_code":"US","type":"education","lineage":["https://openalex.org/I4210141039","https://openalex.org/I99041443"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"F. M. McCarthy","raw_affiliation_strings":["Department of Basic Sciences, College of Veterinary Medicine, Mississippi State University, PO Box 6100, Mississippi, MS 39762, USA. fmccarthy@cvm.msstate.edu","2Institute for Digital Biology, Mississippi State UniversityMS 39762, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Basic Sciences, College of Veterinary Medicine, Mississippi State University, PO Box 6100, Mississippi, MS 39762, USA. fmccarthy@cvm.msstate.edu","institution_ids":["https://openalex.org/I99041443"]},{"raw_affiliation_string":"2Institute for Digital Biology, Mississippi State UniversityMS 39762, USA","institution_ids":["https://openalex.org/I99041443"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111501188","display_name":"S.M. Bridges","orcid":null},"institutions":[{"id":"https://openalex.org/I52890796","display_name":"Mississippi College","ror":"https://ror.org/01p7j6t08","country_code":"US","type":"education","lineage":["https://openalex.org/I52890796"]},{"id":"https://openalex.org/I99041443","display_name":"Mississippi State University","ror":"https://ror.org/0432jq872","country_code":"US","type":"education","lineage":["https://openalex.org/I4210141039","https://openalex.org/I99041443"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"S. M. Bridges","raw_affiliation_strings":["Department of Computer Science and Engineering, Bagley College of Engineering PO Box 9637, Mississippi, MS 39762, USA","Institute for Digital Biology, Mississippi State University MS 39762, USA","3Department of Computer Science and Engineering, Bagley College of EngineeringPO Box 9637, Mississippi, MS 39762, USA","2Institute for Digital Biology, Mississippi State UniversityMS 39762, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Bagley College of Engineering PO Box 9637, Mississippi, MS 39762, USA","institution_ids":["https://openalex.org/I52890796"]},{"raw_affiliation_string":"Institute for Digital Biology, Mississippi State University MS 39762, USA","institution_ids":["https://openalex.org/I99041443"]},{"raw_affiliation_string":"3Department of Computer Science and Engineering, Bagley College of EngineeringPO Box 9637, Mississippi, MS 39762, USA","institution_ids":[]},{"raw_affiliation_string":"2Institute for Digital Biology, Mississippi State UniversityMS 39762, USA","institution_ids":["https://openalex.org/I99041443"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100332800","display_name":"Nan Wang","orcid":"https://orcid.org/0000-0003-4630-5216"},"institutions":[{"id":"https://openalex.org/I52890796","display_name":"Mississippi College","ror":"https://ror.org/01p7j6t08","country_code":"US","type":"education","lineage":["https://openalex.org/I52890796"]},{"id":"https://openalex.org/I99041443","display_name":"Mississippi State University","ror":"https://ror.org/0432jq872","country_code":"US","type":"education","lineage":["https://openalex.org/I4210141039","https://openalex.org/I99041443"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"N. Wang","raw_affiliation_strings":["Department of Computer Science and Engineering, Bagley College of Engineering PO Box 9637, Mississippi, MS 39762, USA","Institute for Digital Biology, Mississippi State University MS 39762, USA","2Institute for Digital Biology, Mississippi State UniversityMS 39762, USA","3Department of Computer Science and Engineering, Bagley College of EngineeringPO Box 9637, Mississippi, MS 39762, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Bagley College of Engineering PO Box 9637, Mississippi, MS 39762, USA","institution_ids":["https://openalex.org/I52890796"]},{"raw_affiliation_string":"Institute for Digital Biology, Mississippi State University MS 39762, USA","institution_ids":["https://openalex.org/I99041443"]},{"raw_affiliation_string":"2Institute for Digital Biology, Mississippi State UniversityMS 39762, USA","institution_ids":["https://openalex.org/I99041443"]},{"raw_affiliation_string":"3Department of Computer Science and Engineering, Bagley College of EngineeringPO Box 9637, Mississippi, MS 39762, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069352006","display_name":"G Bryce Magee","orcid":null},"institutions":[{"id":"https://openalex.org/I52890796","display_name":"Mississippi College","ror":"https://ror.org/01p7j6t08","country_code":"US","type":"education","lineage":["https://openalex.org/I52890796"]},{"id":"https://openalex.org/I99041443","display_name":"Mississippi State University","ror":"https://ror.org/0432jq872","country_code":"US","type":"education","lineage":["https://openalex.org/I4210141039","https://openalex.org/I99041443"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"G. B. Magee","raw_affiliation_strings":["Department of Computer Science and Engineering, Bagley College of Engineering PO Box 9637, Mississippi, MS 39762, USA","Institute for Digital Biology, Mississippi State University MS 39762, USA","2Institute for Digital Biology, Mississippi State UniversityMS 39762, USA","3Department of Computer Science and Engineering, Bagley College of EngineeringPO Box 9637, Mississippi, MS 39762, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Bagley College of Engineering PO Box 9637, Mississippi, MS 39762, USA","institution_ids":["https://openalex.org/I52890796"]},{"raw_affiliation_string":"Institute for Digital Biology, Mississippi State University MS 39762, USA","institution_ids":["https://openalex.org/I99041443"]},{"raw_affiliation_string":"2Institute for Digital Biology, Mississippi State UniversityMS 39762, USA","institution_ids":["https://openalex.org/I99041443"]},{"raw_affiliation_string":"3Department of Computer Science and Engineering, Bagley College of EngineeringPO Box 9637, Mississippi, MS 39762, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033655450","display_name":"W. Paul Williams","orcid":"https://orcid.org/0000-0002-7827-3186"},"institutions":[{"id":"https://openalex.org/I99041443","display_name":"Mississippi State University","ror":"https://ror.org/0432jq872","country_code":"US","type":"education","lineage":["https://openalex.org/I4210141039","https://openalex.org/I99041443"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"W. P. Williams","raw_affiliation_strings":["USDA ARS Corn Host Plant Resistance Research Unit Box 5367, Mississippi, MS 39762, USA","4USDA ARS Corn Host Plant Resistance Research UnitBox 5367, Mississippi, MS 39762, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"USDA ARS Corn Host Plant Resistance Research Unit Box 5367, Mississippi, MS 39762, USA","institution_ids":["https://openalex.org/I99041443"]},{"raw_affiliation_string":"4USDA ARS Corn Host Plant Resistance Research UnitBox 5367, Mississippi, MS 39762, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032153774","display_name":"Dawn S. Luthe","orcid":"https://orcid.org/0000-0002-1978-8825"},"institutions":[{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"D. S. Luthe","raw_affiliation_strings":["Department of Crop and Soil Sciences, The Pennsylvania State University University Park, PA 16802, USA","5Department of Crop and Soil Sciences, The Pennsylvania State UniversityUniversity Park, PA 16802, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Crop and Soil Sciences, The Pennsylvania State University University Park, PA 16802, USA","institution_ids":["https://openalex.org/I130769515"]},{"raw_affiliation_string":"5Department of Crop and Soil Sciences, The Pennsylvania State UniversityUniversity Park, PA 16802, USA","institution_ids":["https://openalex.org/I130769515"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5060219125","display_name":"Shane C. Burgess","orcid":"https://orcid.org/0000-0003-0076-9461"},"institutions":[{"id":"https://openalex.org/I52890796","display_name":"Mississippi College","ror":"https://ror.org/01p7j6t08","country_code":"US","type":"education","lineage":["https://openalex.org/I52890796"]},{"id":"https://openalex.org/I99041443","display_name":"Mississippi State University","ror":"https://ror.org/0432jq872","country_code":"US","type":"education","lineage":["https://openalex.org/I4210141039","https://openalex.org/I99041443"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"S. C. Burgess","raw_affiliation_strings":["Department of Basic Sciences, College of Veterinary Medicine, Mississippi State University PO Box 6100, Mississippi, MS 39762, USA","Department of Computer Science and Engineering, Bagley College of Engineering PO Box 9637, Mississippi, MS 39762, USA","Mississippi Agricultural and Forestry Experiment Station, Mississippi State University MS 39762, USA","1Department of Basic Sciences, College of Veterinary Medicine, Mississippi State UniversityPO Box 6100, Mississippi, MS 39762, USA","6Mississippi Agricultural and Forestry Experiment Station, Mississippi State UniversityMS 39762, USA","3Department of Computer Science and Engineering, Bagley College of EngineeringPO Box 9637, Mississippi, MS 39762, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Basic Sciences, College of Veterinary Medicine, Mississippi State University PO Box 6100, Mississippi, MS 39762, USA","institution_ids":["https://openalex.org/I99041443"]},{"raw_affiliation_string":"Department of Computer Science and Engineering, Bagley College of Engineering PO Box 9637, Mississippi, MS 39762, USA","institution_ids":["https://openalex.org/I52890796"]},{"raw_affiliation_string":"Mississippi Agricultural and Forestry Experiment Station, Mississippi State University MS 39762, USA","institution_ids":["https://openalex.org/I99041443"]},{"raw_affiliation_string":"1Department of Basic Sciences, College of Veterinary Medicine, Mississippi State UniversityPO Box 6100, Mississippi, MS 39762, USA","institution_ids":["https://openalex.org/I99041443"]},{"raw_affiliation_string":"6Mississippi Agricultural and Forestry Experiment Station, Mississippi State UniversityMS 39762, USA","institution_ids":["https://openalex.org/I99041443"]},{"raw_affiliation_string":"3Department of Computer Science and Engineering, Bagley College of EngineeringPO Box 9637, Mississippi, MS 39762, USA","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5089552380","https://openalex.org/A5111501188"],"corresponding_institution_ids":["https://openalex.org/I52890796","https://openalex.org/I99041443"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":4.3639,"has_fulltext":true,"cited_by_count":101,"citation_normalized_percentile":{"value":0.95007792,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":95,"max":99},"biblio":{"volume":"35","issue":"Database","first_page":"D599","last_page":"D603"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9919999837875366,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.968999981880188,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/proteogenomics","display_name":"Proteogenomics","score":0.831975519657135},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.8143683075904846},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6094968914985657},{"id":"https://openalex.org/keywords/resource","display_name":"Resource (disambiguation)","score":0.5667890906333923},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.5515270233154297},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4915691316127777},{"id":"https://openalex.org/keywords/functional-genomics","display_name":"Functional genomics","score":0.48929092288017273},{"id":"https://openalex.org/keywords/proteomics","display_name":"Proteomics","score":0.476139098405838},{"id":"https://openalex.org/keywords/gene-annotation","display_name":"Gene Annotation","score":0.464840829372406},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.4600612223148346},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.4194217622280121},{"id":"https://openalex.org/keywords/gene-ontology","display_name":"Gene ontology","score":0.41704031825065613},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.41486483812332153},{"id":"https://openalex.org/keywords/controlled-vocabulary","display_name":"Controlled vocabulary","score":0.41335156559944153},{"id":"https://openalex.org/keywords/web-resource","display_name":"Web resource","score":0.41189634799957275},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3985205292701721},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3629579544067383},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.2589288651943207},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.22440549731254578},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1449151635169983}],"concepts":[{"id":"https://openalex.org/C145741570","wikidata":"https://www.wikidata.org/wiki/Q7251534","display_name":"Proteogenomics","level":5,"score":0.831975519657135},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.8143683075904846},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6094968914985657},{"id":"https://openalex.org/C206345919","wikidata":"https://www.wikidata.org/wiki/Q20380951","display_name":"Resource (disambiguation)","level":2,"score":0.5667890906333923},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.5515270233154297},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4915691316127777},{"id":"https://openalex.org/C161078062","wikidata":"https://www.wikidata.org/wiki/Q1068690","display_name":"Functional genomics","level":5,"score":0.48929092288017273},{"id":"https://openalex.org/C46111723","wikidata":"https://www.wikidata.org/wiki/Q471857","display_name":"Proteomics","level":3,"score":0.476139098405838},{"id":"https://openalex.org/C2908923196","wikidata":"https://www.wikidata.org/wiki/Q5205742","display_name":"Gene Annotation","level":4,"score":0.464840829372406},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.4600612223148346},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.4194217622280121},{"id":"https://openalex.org/C2987395477","wikidata":"https://www.wikidata.org/wiki/Q135085","display_name":"Gene ontology","level":4,"score":0.41704031825065613},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.41486483812332153},{"id":"https://openalex.org/C110615152","wikidata":"https://www.wikidata.org/wiki/Q1469824","display_name":"Controlled vocabulary","level":2,"score":0.41335156559944153},{"id":"https://openalex.org/C65603577","wikidata":"https://www.wikidata.org/wiki/Q3427877","display_name":"Web resource","level":2,"score":0.41189634799957275},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3985205292701721},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3629579544067383},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.2589288651943207},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.22440549731254578},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1449151635169983},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000383","descriptor_name":"Agriculture","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000383","descriptor_name":"Agriculture","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000383","descriptor_name":"Agriculture","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000829","descriptor_name":"Animals, Domestic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000829","descriptor_name":"Animals, Domestic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000829","descriptor_name":"Animals, Domestic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018556","descriptor_name":"Crops, Agricultural","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018556","descriptor_name":"Crops, Agricultural","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018556","descriptor_name":"Crops, Agricultural","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018556","descriptor_name":"Crops, Agricultural","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D018556","descriptor_name":"Crops, Agricultural","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D018556","descriptor_name":"Crops, Agricultural","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":8,"locations":[{"id":"doi:10.1093/nar/gkl936","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkl936","pdf_url":"https://academic.oup.com/nar/article-pdf/35/suppl_1/D599/3879610/gkl936.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:17135208","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17135208","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.279.2532","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.279.2532","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ftp://ftp.ncbi.nlm.nih.gov/pub/pmc/1a/7a/Nucleic_Acids_Res_2007_Jan_29_35(Database_issue)_D599-D603.tar.gz","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.581.8297","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.581.8297","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/content/early/2006/11/29/nar.gkl936.full-text-lowres.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.631.9864","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.631.9864","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/content/early/2006/11/29/nar.gkl936.full.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.632.3756","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.632.3756","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/content/35/suppl_1/D599.full-text-lowres.pdf","raw_type":"text"},{"id":"pmh:oai:europepmc.org:2284870","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/1751552","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:1751552","is_oa":true,"landing_page_url":"http://doi.org/10.1093/nar/gkl936","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkl936","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkl936","pdf_url":"https://academic.oup.com/nar/article-pdf/35/suppl_1/D599/3879610/gkl936.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Zero hunger","id":"https://metadata.un.org/sdg/2","score":0.6899999976158142}],"awards":[],"funders":[{"id":"https://openalex.org/F4320306114","display_name":"U.S. Department of Agriculture","ror":"https://ror.org/01na82s61"},{"id":"https://openalex.org/F4320312580","display_name":"Maine Agricultural and Forest Experiment Station","ror":"https://ror.org/01adr0w49"},{"id":"https://openalex.org/F4320332694","display_name":"Bagley College of Engineering, Mississippi State University","ror":"https://ror.org/0432jq872"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2121001818.pdf","grobid_xml":"https://content.openalex.org/works/W2121001818.grobid-xml"},"referenced_works_count":35,"referenced_works":["https://openalex.org/W1709622954","https://openalex.org/W1982133300","https://openalex.org/W1990144966","https://openalex.org/W2021653707","https://openalex.org/W2025648577","https://openalex.org/W2067371917","https://openalex.org/W2085857756","https://openalex.org/W2093451145","https://openalex.org/W2096721473","https://openalex.org/W2099100406","https://openalex.org/W2108491719","https://openalex.org/W2109972285","https://openalex.org/W2110330412","https://openalex.org/W2110381752","https://openalex.org/W2118473647","https://openalex.org/W2122683221","https://openalex.org/W2123859786","https://openalex.org/W2127833142","https://openalex.org/W2132784310","https://openalex.org/W2133253129","https://openalex.org/W2134121810","https://openalex.org/W2140300290","https://openalex.org/W2151337118","https://openalex.org/W2151763757","https://openalex.org/W2152497088","https://openalex.org/W2156622081","https://openalex.org/W2160053034","https://openalex.org/W2161732286","https://openalex.org/W2168148721","https://openalex.org/W2170949754","https://openalex.org/W4231824804","https://openalex.org/W4235874578","https://openalex.org/W4249273120","https://openalex.org/W4292239814","https://openalex.org/W4297789148"],"related_works":["https://openalex.org/W1872959741","https://openalex.org/W3021206937","https://openalex.org/W2294108133","https://openalex.org/W2754860811","https://openalex.org/W4242356038","https://openalex.org/W1988810589","https://openalex.org/W1975798613","https://openalex.org/W2057323233","https://openalex.org/W2136890152","https://openalex.org/W2140593394"],"abstract_inverted_index":{"Analysis":[0],"of":[1,47,58,88,157],"functional":[2,22,161],"genomics":[3,162],"(transcriptomics":[4],"and":[5,21,62,81,129,135,148,176,183],"proteomics)":[6],"datasets":[7,163],"is":[8,167],"hindered":[9],"in":[10,28,55],"agricultural":[11,14,189],"species":[12,30],"because":[13],"genome":[15],"sequences":[16],"have":[17,32,42,141],"relatively":[18],"poor":[19],"structural":[20,45],"annotation.":[23],"To":[24],"facilitate":[25],"systems":[26],"biology":[27],"these":[29,149],"we":[31,82],"established":[33],"the":[34,44,54,71,100,133,165,171],"curated,":[35],"web-accessible,":[36],"public":[37],"resource":[38],"'AgBase'":[39],"(www.agbase.msstate.edu).":[40],"We":[41,75,140,174],"improved":[43],"annotation":[46],"agriculturally":[48],"important":[49],"genomes":[50],"by":[51,63],"experimentally":[52],"confirming":[53],"vivo":[56],"expression":[57],"electronically":[59],"predicted":[60,138],"proteins":[61],"proteogenomic":[64],"mapping.":[65],"Proteogenomic":[66],"data":[67],"are":[68,150],"available":[69,152,168],"from":[70,126,132,181],"AgBase":[72,172],"proteogenomics":[73],"link.":[74],"contribute":[76],"Gene":[77],"Ontology":[78],"(GO)":[79],"annotations":[80,90,104,117,131,136,180],"provide":[83,184],"a":[84],"two":[85,143],"tier":[86],"system":[87],"GO":[89,103,116,166,179,195],"for":[91,137,145,159,188,194],"users.":[92],"The":[93,110],"'GO":[94],"Consortium'":[95],"gene":[96,112],"association":[97,113],"file":[98,114],"contains":[99,115],"most":[101],"rigorous":[102],"based":[105,118,124],"solely":[106],"on":[107,119,153],"experimental":[108],"data.":[109],"'Community'":[111],"expert":[120],"community":[121],"knowledge":[122],"(annotations":[123],"directly":[125],"author":[127],"statements":[128],"submitted":[130],"community)":[134],"proteins.":[139],"developed":[142],"tools":[144,158],"proteomics":[146],"analysis":[147],"freely":[151],"request.":[154],"A":[155],"suite":[156],"analyzing":[160],"using":[164],"online":[169,186],"at":[170],"site.":[173],"encourage":[175],"publicly":[177],"acknowledge":[178],"researchers":[182,190],"an":[185],"mechanism":[187],"to":[191],"submit":[192],"requests":[193],"annotations.":[196]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":7},{"year":2013,"cited_by_count":6},{"year":2012,"cited_by_count":4}],"updated_date":"2026-06-16T07:32:37.131356","created_date":"2025-10-10T00:00:00"}
