{"id":"https://openalex.org/W2095294411","doi":"https://doi.org/10.1093/nar/gkl876","title":"SynDB: a Synapse protein DataBase based on synapse ontology","display_name":"SynDB: a Synapse protein DataBase based on synapse ontology","publication_year":2006,"publication_date":"2006-11-14","ids":{"openalex":"https://openalex.org/W2095294411","doi":"https://doi.org/10.1093/nar/gkl876","mag":"2095294411","pmid":"https://pubmed.ncbi.nlm.nih.gov/17098931"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkl876","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkl876","pdf_url":"https://academic.oup.com/nar/article-pdf/35/suppl_1/D737/3856299/gkl876.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/35/suppl_1/D737/3856299/gkl876.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5115592172","display_name":"W. Zhang","orcid":"https://orcid.org/0000-0002-3474-7511"},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"W. Zhang","raw_affiliation_strings":["Center for Bioinformatics, National Laboratory of Protein Engineering and Plant Genetic Engineering College of Life Sciences, Peking University, Beijing 100871, P.R. China","Center for Bioinformatics, National Laboratory of Protein Engineering and Plant Genetic Engineering, College of Life Sciences, Peking University, Beijing, 100871, P.R. China"],"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics, National Laboratory of Protein Engineering and Plant Genetic Engineering College of Life Sciences, Peking University, Beijing 100871, P.R. China","institution_ids":[]},{"raw_affiliation_string":"Center for Bioinformatics, National Laboratory of Protein Engineering and Plant Genetic Engineering, College of Life Sciences, Peking University, Beijing, 100871, P.R. China","institution_ids":["https://openalex.org/I20231570"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035053309","display_name":"Y. Zhang","orcid":"https://orcid.org/0000-0002-0157-188X"},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Y. Zhang","raw_affiliation_strings":["Center for Bioinformatics, National Laboratory of Protein Engineering and Plant Genetic Engineering,","College of Life Sciences, Peking University, Beijing 100871, P.R. China,"],"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics, National Laboratory of Protein Engineering and Plant Genetic Engineering,","institution_ids":[]},{"raw_affiliation_string":"College of Life Sciences, Peking University, Beijing 100871, P.R. China,","institution_ids":["https://openalex.org/I20231570"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060244431","display_name":"Hui Zheng","orcid":"https://orcid.org/0000-0001-6801-0529"},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"H. Zheng","raw_affiliation_strings":["1Institute of Molecular Medicine, Peking UniversityBeijing 100871, P.R. China"],"affiliations":[{"raw_affiliation_string":"1Institute of Molecular Medicine, Peking UniversityBeijing 100871, P.R. China","institution_ids":["https://openalex.org/I20231570"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100687487","display_name":"Changsheng Zhang","orcid":"https://orcid.org/0000-0003-2349-3138"},"institutions":[{"id":"https://openalex.org/I4210096815","display_name":"Southwestern Medical Center","ror":"https://ror.org/00t9vx427","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210096815"]},{"id":"https://openalex.org/I867280407","display_name":"The University of Texas Southwestern Medical Center","ror":"https://ror.org/05byvp690","country_code":"US","type":"education","lineage":["https://openalex.org/I867280407"]},{"id":"https://openalex.org/I4388891891","display_name":"Southwestern Medical Center","ror":"https://ror.org/05d80e146","country_code":null,"type":"healthcare","lineage":["https://openalex.org/I4388891891"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"C. Zhang","raw_affiliation_strings":["2Center for Basic Neuroscience, UT Southwestern Medical CenterDallas, TX 75235, USA"],"affiliations":[{"raw_affiliation_string":"2Center for Basic Neuroscience, UT Southwestern Medical CenterDallas, TX 75235, USA","institution_ids":["https://openalex.org/I867280407","https://openalex.org/I4210096815","https://openalex.org/I4388891891"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076628427","display_name":"Wei Xiong","orcid":"https://orcid.org/0000-0002-2784-7696"},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"W. Xiong","raw_affiliation_strings":["1Institute of Molecular Medicine, Peking UniversityBeijing 100871, P.R. China"],"affiliations":[{"raw_affiliation_string":"1Institute of Molecular Medicine, Peking UniversityBeijing 100871, P.R. China","institution_ids":["https://openalex.org/I20231570"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074473131","display_name":"J. G. Olyarchuk","orcid":null},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"J. G. Olyarchuk","raw_affiliation_strings":["Center for Bioinformatics, National Laboratory of Protein Engineering and Plant Genetic Engineering,","College of Life Sciences, Peking University, Beijing 100871, P.R. China,"],"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics, National Laboratory of Protein Engineering and Plant Genetic Engineering,","institution_ids":[]},{"raw_affiliation_string":"College of Life Sciences, Peking University, Beijing 100871, P.R. China,","institution_ids":["https://openalex.org/I20231570"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081465083","display_name":"Matthew C. Walker","orcid":"https://orcid.org/0000-0002-0812-0352"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"M. Walker","raw_affiliation_strings":["3Department of MedicineStanford, CA 94305, USA"],"affiliations":[{"raw_affiliation_string":"3Department of MedicineStanford, CA 94305, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5115595251","display_name":"Weiwei Xu","orcid":"https://orcid.org/0000-0003-3900-8547"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"W. Xu","raw_affiliation_strings":["4Department of Psychiatry and Behavioral Sciences, Stanford University School of MedicineStanford, CA 94305, USA"],"affiliations":[{"raw_affiliation_string":"4Department of Psychiatry and Behavioral Sciences, Stanford University School of MedicineStanford, CA 94305, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058802996","display_name":"Min Zhao","orcid":"https://orcid.org/0000-0001-5498-3434"},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"M. Zhao","raw_affiliation_strings":["College of Life Sciences, Peking University, Beijing 100871, P.R. China,","Center for Bioinformatics, National Laboratory of Protein Engineering and Plant Genetic Engineering,"],"affiliations":[{"raw_affiliation_string":"College of Life Sciences, Peking University, Beijing 100871, P.R. China,","institution_ids":["https://openalex.org/I20231570"]},{"raw_affiliation_string":"Center for Bioinformatics, National Laboratory of Protein Engineering and Plant Genetic Engineering,","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016283346","display_name":"Shanshan Zhao","orcid":"https://orcid.org/0000-0001-5476-6894"},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"S. Zhao","raw_affiliation_strings":["Center for Bioinformatics, National Laboratory of Protein Engineering and Plant Genetic Engineering,","College of Life Sciences, Peking University, Beijing 100871, P.R. China,"],"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics, National Laboratory of Protein Engineering and Plant Genetic Engineering,","institution_ids":[]},{"raw_affiliation_string":"College of Life Sciences, Peking University, Beijing 100871, P.R. China,","institution_ids":["https://openalex.org/I20231570"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038971840","display_name":"Zhuo Zhou","orcid":"https://orcid.org/0000-0001-5862-9854"},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Z. Zhou","raw_affiliation_strings":["1Institute of Molecular Medicine, Peking UniversityBeijing 100871, P.R. China"],"affiliations":[{"raw_affiliation_string":"1Institute of Molecular Medicine, Peking UniversityBeijing 100871, P.R. China","institution_ids":["https://openalex.org/I20231570"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5108048800","display_name":"L. Wei","orcid":null},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"L. Wei","raw_affiliation_strings":["College of Life Sciences, Peking University, Beijing 100871, P.R. China,","Center for Bioinformatics, National Laboratory of Protein Engineering and Plant Genetic Engineering,"],"affiliations":[{"raw_affiliation_string":"College of Life Sciences, Peking University, Beijing 100871, P.R. China,","institution_ids":["https://openalex.org/I20231570"]},{"raw_affiliation_string":"Center for Bioinformatics, National Laboratory of Protein Engineering and Plant Genetic Engineering,","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":12,"corresponding_author_ids":["https://openalex.org/A5115592172"],"corresponding_institution_ids":["https://openalex.org/I20231570"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":1.7709,"has_fulltext":true,"cited_by_count":48,"citation_normalized_percentile":{"value":0.83525358,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"35","issue":"Database","first_page":"D737","last_page":"D741"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.995199978351593,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.995199978351593,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7618736028671265},{"id":"https://openalex.org/keywords/synapse","display_name":"Synapse","score":0.7599697113037109},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5209844708442688},{"id":"https://openalex.org/keywords/protein-domain","display_name":"Protein domain","score":0.46835461258888245},{"id":"https://openalex.org/keywords/neuroscience","display_name":"Neuroscience","score":0.30783921480178833},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.27319079637527466},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2109679877758026}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7618736028671265},{"id":"https://openalex.org/C127445978","wikidata":"https://www.wikidata.org/wiki/Q187181","display_name":"Synapse","level":2,"score":0.7599697113037109},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5209844708442688},{"id":"https://openalex.org/C144292202","wikidata":"https://www.wikidata.org/wiki/Q898273","display_name":"Protein domain","level":3,"score":0.46835461258888245},{"id":"https://openalex.org/C169760540","wikidata":"https://www.wikidata.org/wiki/Q207011","display_name":"Neuroscience","level":1,"score":0.30783921480178833},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.27319079637527466},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2109679877758026}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D013569","descriptor_name":"Synapses","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D013569","descriptor_name":"Synapses","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D013569","descriptor_name":"Synapses","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051381","descriptor_name":"Rats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051381","descriptor_name":"Rats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051381","descriptor_name":"Rats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1093/nar/gkl876","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkl876","pdf_url":"https://academic.oup.com/nar/article-pdf/35/suppl_1/D737/3856299/gkl876.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:17098931","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17098931","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.622.9967","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.622.9967","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/content/35/suppl_1/D737.full-text-lowres.pdf","raw_type":"text"},{"id":"pmh:oai:europepmc.org:2284736","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/1669723","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:1669723","is_oa":true,"landing_page_url":"http://doi.org/10.1093/nar/gkl876","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"},{"id":"pmh:oai:research.usc.edu.au:usc:13903","is_oa":true,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4377196572","display_name":"USC Research Bank (University of the Sunshine Coast)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I174025329","host_organization_name":"University of the Sunshine Coast","host_organization_lineage":["https://openalex.org/I174025329"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"},{"id":"pmh:usc:13903","is_oa":true,"landing_page_url":"http://dx.doi.org/10.1093/nar/gkl876","pdf_url":null,"source":{"id":"https://openalex.org/S4306401632","display_name":"USC Research Bank (University of the Sunshine Coast)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I174025329","host_organization_name":"University of the Sunshine Coast","host_organization_lineage":["https://openalex.org/I174025329"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"}],"best_oa_location":{"id":"doi:10.1093/nar/gkl876","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkl876","pdf_url":"https://academic.oup.com/nar/article-pdf/35/suppl_1/D737/3856299/gkl876.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1121271761","display_name":null,"funder_award_id":"Program","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2087396116","display_name":null,"funder_award_id":"China","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3919318525","display_name":null,"funder_award_id":"B06001","funder_id":"https://openalex.org/F4320335785","funder_display_name":"Project 211"},{"id":"https://openalex.org/G4243412236","display_name":null,"funder_award_id":"863 Program","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5501017746","display_name":null,"funder_award_id":"2006CB500800","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G7608752429","display_name":null,"funder_award_id":"Talent","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320335773","display_name":"National High-tech Research and Development Program","ror":null},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null},{"id":"https://openalex.org/F4320335785","display_name":"Project 211","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2095294411.pdf","grobid_xml":"https://content.openalex.org/works/W2095294411.grobid-xml"},"referenced_works_count":38,"referenced_works":["https://openalex.org/W90362830","https://openalex.org/W167818497","https://openalex.org/W363694942","https://openalex.org/W1241200771","https://openalex.org/W1981638715","https://openalex.org/W1988878611","https://openalex.org/W1988928668","https://openalex.org/W1996181439","https://openalex.org/W2010667064","https://openalex.org/W2019796713","https://openalex.org/W2040663112","https://openalex.org/W2047514319","https://openalex.org/W2051795211","https://openalex.org/W2057015734","https://openalex.org/W2071032064","https://openalex.org/W2078872331","https://openalex.org/W2087124394","https://openalex.org/W2103017472","https://openalex.org/W2103260426","https://openalex.org/W2105106534","https://openalex.org/W2118660857","https://openalex.org/W2119195082","https://openalex.org/W2119412782","https://openalex.org/W2124166542","https://openalex.org/W2131736388","https://openalex.org/W2134539970","https://openalex.org/W2136226961","https://openalex.org/W2137079713","https://openalex.org/W2143455592","https://openalex.org/W2154139219","https://openalex.org/W2401205289","https://openalex.org/W2977393556","https://openalex.org/W3148499377","https://openalex.org/W3196492948","https://openalex.org/W4240921265","https://openalex.org/W4248234957","https://openalex.org/W4295888250","https://openalex.org/W6817887571"],"related_works":["https://openalex.org/W2082860237","https://openalex.org/W2119695867","https://openalex.org/W2130076355","https://openalex.org/W1990804418","https://openalex.org/W1993764875","https://openalex.org/W2788277189","https://openalex.org/W2013243191","https://openalex.org/W2151865869","https://openalex.org/W2117258802","https://openalex.org/W4234157524"],"abstract_inverted_index":{"A":[0],"synapse":[1,30],"is":[2,172],"the":[3,29,106,133,173],"junction":[4],"across":[5],"which":[6],"a":[7,16,50,82],"nerve":[8],"impulse":[9],"passes":[10],"from":[11],"an":[12],"axon":[13],"terminal":[14],"to":[15,33,64,123,177],"neuron,":[17],"muscle":[18],"cell":[19],"or":[20,154,167],"gland":[21],"cell.":[22],"The":[23,126],"functions":[24],"and":[25,42,61,73,90,117,120,130],"building":[26],"molecules":[27],"of":[28,59,84],"are":[31,128],"essential":[32],"almost":[34],"all":[35],"neurobiological":[36],"processes.":[37],"To":[38],"describe":[39],"synaptic":[40,180],"structures":[41],"functions,":[43],"we":[44,93],"have":[45],"developed":[46],"Synapse":[47,134],"Ontology":[48,147],"(SynO),":[49],"hierarchical":[51],"representation":[52],"that":[53],"includes":[54],"177":[55],"terms":[56],"with":[57,77,108,121],"hundreds":[58],"synonyms":[60],"branches":[62],"up":[63],"eight":[65],"levels":[66],"deep.":[67],"associated":[68],"125":[69],"additional":[70],"protein":[71,135],"keywords":[72],"109":[74],"InterPro":[75],"domains":[76],"these":[78],"SynO":[79],"terms.":[80],"Using":[81],"combination":[83],"automated":[85],"keyword":[86],"searches,":[87],"domain":[88,149],"searches":[89],"manual":[91],"curation,":[92],"collected":[94],"14,000":[95],"non-redundant":[96],"synapse-related":[97],"proteins,":[98],"including":[99],"3000":[100],"in":[101,132],"human.":[102],"We":[103],"extensively":[104],"annotated":[105],"proteins":[107],"information":[109],"about":[110],"sequence,":[111],"structure,":[112],"function,":[113],"expression,":[114],"pathways,":[115],"interactions":[116],"disease":[118],"associations":[119],"hyperlinks":[122],"external":[124],"databases.":[125],"data":[127],"stored":[129],"presented":[131],"DataBase":[136],"(SynDB,":[137],"http://syndb.cbi.pku.edu.cn).":[138],"SynDB":[139,171],"can":[140,158],"be":[141,160],"interactively":[142],"browsed":[143],"by":[144,162,168],"SynO,":[145],"Gene":[146],"(GO),":[148],"families,":[150],"species,":[151],"chromosomal":[152],"locations":[153],"Tribe-MCL":[155],"clusters.":[156],"It":[157],"also":[159],"searched":[161],"text":[163],"(including":[164],"Boolean":[165],"operators)":[166],"sequence":[169],"similarity.":[170],"most":[174],"comprehensive":[175],"database":[176],"date":[178],"for":[179],"proteins.":[181]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":3},{"year":2019,"cited_by_count":6},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":9}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
