{"id":"https://openalex.org/W2144882930","doi":"https://doi.org/10.1093/nar/gkl851","title":"Pseudogene.org: a comprehensive database and comparison platform for pseudogene annotation","display_name":"Pseudogene.org: a comprehensive database and comparison platform for pseudogene annotation","publication_year":2006,"publication_date":"2006-11-11","ids":{"openalex":"https://openalex.org/W2144882930","doi":"https://doi.org/10.1093/nar/gkl851","mag":"2144882930","pmid":"https://pubmed.ncbi.nlm.nih.gov/17099229"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkl851","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkl851","pdf_url":"https://academic.oup.com/nar/article-pdf/35/suppl_1/D55/17422488/gkl851.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/35/suppl_1/D55/17422488/gkl851.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5027197880","display_name":"John Karro","orcid":null},"institutions":[{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"John E. Karro","raw_affiliation_strings":["Center for Comparative Genomics and Bioinformatics, 506B Wartik, Pennsylvania State University, University Park, PA 16802, USA. jkarro@acm.org","Center for Comparative Genomics and Bioinformatics, 506B Wartik, Pennsylvania State University, University Park, PA 16802, USA"],"affiliations":[{"raw_affiliation_string":"Center for Comparative Genomics and Bioinformatics, 506B Wartik, Pennsylvania State University, University Park, PA 16802, USA. jkarro@acm.org","institution_ids":["https://openalex.org/I130769515"]},{"raw_affiliation_string":"Center for Comparative Genomics and Bioinformatics, 506B Wartik, Pennsylvania State University, University Park, PA 16802, USA","institution_ids":["https://openalex.org/I130769515"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042167162","display_name":"Yangpan Yan","orcid":null},"institutions":[{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yangpan Yan","raw_affiliation_strings":["Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06520, USA,","1Department of Molecular Biophysics and Biochemistry, Yale UniversityNew Haven, CT 06520, USA"],"affiliations":[{"raw_affiliation_string":"Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06520, USA,","institution_ids":["https://openalex.org/I32971472"]},{"raw_affiliation_string":"1Department of Molecular Biophysics and Biochemistry, Yale UniversityNew Haven, CT 06520, USA","institution_ids":["https://openalex.org/I32971472"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053246999","display_name":"Deyou Zheng","orcid":"https://orcid.org/0000-0003-4354-5337"},"institutions":[{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Deyou Zheng","raw_affiliation_strings":["Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06520, USA,","1Department of Molecular Biophysics and Biochemistry, Yale UniversityNew Haven, CT 06520, USA"],"affiliations":[{"raw_affiliation_string":"Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06520, USA,","institution_ids":["https://openalex.org/I32971472"]},{"raw_affiliation_string":"1Department of Molecular Biophysics and Biochemistry, Yale UniversityNew Haven, CT 06520, USA","institution_ids":["https://openalex.org/I32971472"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009847434","display_name":"Zhaolei Zhang","orcid":"https://orcid.org/0000-0002-7303-6472"},"institutions":[{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Zhaolei Zhang","raw_affiliation_strings":["Banting and Best Department of Medical Research (BBDMR), Donnelly CCBR, University of Toronto, 160 College Street, Toronto, ON, Canada M5S 3E1,","2Banting and Best Department of Medical Research (BBDMR), Donnelly CCBRUniversity of Toronto, 160 College Street, Toronto, ON, Canada M5S 3E1"],"affiliations":[{"raw_affiliation_string":"Banting and Best Department of Medical Research (BBDMR), Donnelly CCBR, University of Toronto, 160 College Street, Toronto, ON, Canada M5S 3E1,","institution_ids":["https://openalex.org/I185261750"]},{"raw_affiliation_string":"2Banting and Best Department of Medical Research (BBDMR), Donnelly CCBRUniversity of Toronto, 160 College Street, Toronto, ON, Canada M5S 3E1","institution_ids":["https://openalex.org/I185261750"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008524932","display_name":"Nicholas Carriero","orcid":null},"institutions":[{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nicholas Carriero","raw_affiliation_strings":["Department of Computer Science, Yale University, New Haven, CT 06520, USA,","3Department of Computer Science, Yale UniversityNew Haven, CT 06520, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Yale University, New Haven, CT 06520, USA,","institution_ids":["https://openalex.org/I32971472"]},{"raw_affiliation_string":"3Department of Computer Science, Yale UniversityNew Haven, CT 06520, USA","institution_ids":["https://openalex.org/I32971472"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061086791","display_name":"Philip Cayting","orcid":null},"institutions":[{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Philip Cayting","raw_affiliation_strings":["Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06520, USA,","1Department of Molecular Biophysics and Biochemistry, Yale UniversityNew Haven, CT 06520, USA"],"affiliations":[{"raw_affiliation_string":"Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06520, USA,","institution_ids":["https://openalex.org/I32971472"]},{"raw_affiliation_string":"1Department of Molecular Biophysics and Biochemistry, Yale UniversityNew Haven, CT 06520, USA","institution_ids":["https://openalex.org/I32971472"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089543335","display_name":"Paul Harrrison","orcid":null},"institutions":[{"id":"https://openalex.org/I5023651","display_name":"McGill University","ror":"https://ror.org/01pxwe438","country_code":"CA","type":"education","lineage":["https://openalex.org/I5023651"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Paul Harrrison","raw_affiliation_strings":["Department of Biology, McGill University, Stewart Biology Building, 1205 Dr Penfield Avenue, Montreal, QC, Canada H3A 1B1 and","4Department of Biology, McGill UniversityStewart Biology Building, 1205 Dr Penfield Avenue, Montreal, QC, Canada H3A 1B1"],"affiliations":[{"raw_affiliation_string":"Department of Biology, McGill University, Stewart Biology Building, 1205 Dr Penfield Avenue, Montreal, QC, Canada H3A 1B1 and","institution_ids":["https://openalex.org/I5023651"]},{"raw_affiliation_string":"4Department of Biology, McGill UniversityStewart Biology Building, 1205 Dr Penfield Avenue, Montreal, QC, Canada H3A 1B1","institution_ids":["https://openalex.org/I5023651"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5042321575","display_name":"Mark Gerstein","orcid":"https://orcid.org/0000-0002-9746-3719"},"institutions":[{"id":"https://openalex.org/I2801525552","display_name":"Whitney Museum of American Art","ror":"https://ror.org/01g1t6g78","country_code":"US","type":"archive","lineage":["https://openalex.org/I2801525552"]},{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Mark Gerstein","raw_affiliation_strings":["1Department of Molecular Biophysics and Biochemistry, Yale UniversityNew Haven, CT 06520, USA","3Department of Computer Science, Yale UniversityNew Haven, CT 06520, USA","5Program in Computational Biology and Bioinformatics, Yale UniversityBass 432, 266 Whitney Avenue, New Haven, CT 06520, USA"],"affiliations":[{"raw_affiliation_string":"1Department of Molecular Biophysics and Biochemistry, Yale UniversityNew Haven, CT 06520, USA","institution_ids":["https://openalex.org/I32971472"]},{"raw_affiliation_string":"3Department of Computer Science, Yale UniversityNew Haven, CT 06520, USA","institution_ids":["https://openalex.org/I32971472"]},{"raw_affiliation_string":"5Program in Computational Biology and Bioinformatics, Yale UniversityBass 432, 266 Whitney Avenue, New Haven, CT 06520, USA","institution_ids":["https://openalex.org/I32971472","https://openalex.org/I2801525552"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5042321575"],"corresponding_institution_ids":["https://openalex.org/I2801525552","https://openalex.org/I32971472"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":4.3593,"has_fulltext":true,"cited_by_count":195,"citation_normalized_percentile":{"value":0.95029939,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"35","issue":"suppl_1","first_page":"D55","last_page":"D60"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9962000250816345,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.9929999709129333,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/pseudogene","display_name":"Pseudogene","score":0.9671217203140259},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.6371095180511475},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6257246732711792},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5435209274291992},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5340069532394409},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.4871218204498291},{"id":"https://openalex.org/keywords/prokaryote","display_name":"Prokaryote","score":0.4532318413257599},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.43850621581077576},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4360079765319824},{"id":"https://openalex.org/keywords/object","display_name":"Object (grammar)","score":0.43473032116889954},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4088881313800812},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2490200698375702},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.16778090596199036},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.15837228298187256}],"concepts":[{"id":"https://openalex.org/C34957205","wikidata":"https://www.wikidata.org/wiki/Q277338","display_name":"Pseudogene","level":4,"score":0.9671217203140259},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.6371095180511475},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6257246732711792},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5435209274291992},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5340069532394409},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.4871218204498291},{"id":"https://openalex.org/C2780918051","wikidata":"https://www.wikidata.org/wiki/Q19081","display_name":"Prokaryote","level":3,"score":0.4532318413257599},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.43850621581077576},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4360079765319824},{"id":"https://openalex.org/C2781238097","wikidata":"https://www.wikidata.org/wiki/Q175026","display_name":"Object (grammar)","level":2,"score":0.43473032116889954},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4088881313800812},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2490200698375702},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.16778090596199036},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.15837228298187256},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011544","descriptor_name":"Pseudogenes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011544","descriptor_name":"Pseudogenes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011544","descriptor_name":"Pseudogenes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":7,"locations":[{"id":"doi:10.1093/nar/gkl851","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkl851","pdf_url":"https://academic.oup.com/nar/article-pdf/35/suppl_1/D55/17422488/gkl851.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:17099229","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17099229","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.280.7656","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.280.7656","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ftp://ftp.ncbi.nlm.nih.gov/pub/pmc/d9/45/Nucleic_Acids_Res_2007_Jan_11_35(Database_issue)_D55-D60.tar.gz","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.581.7492","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.581.7492","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/content/35/suppl_1/D55.full-text-lowres.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.631.5666","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.631.5666","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/content/early/2006/11/11/nar.gkl851.full-text-lowres.pdf","raw_type":"text"},{"id":"pmh:oai:europepmc.org:2284721","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/1669708","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:1669708","is_oa":true,"landing_page_url":"http://doi.org/10.1093/nar/gkl851","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkl851","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkl851","pdf_url":"https://academic.oup.com/nar/article-pdf/35/suppl_1/D55/17422488/gkl851.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2144882930.pdf","grobid_xml":"https://content.openalex.org/works/W2144882930.grobid-xml"},"referenced_works_count":27,"referenced_works":["https://openalex.org/W1966803394","https://openalex.org/W1977805690","https://openalex.org/W2021868564","https://openalex.org/W2045742821","https://openalex.org/W2060959659","https://openalex.org/W2061249615","https://openalex.org/W2098433852","https://openalex.org/W2113394593","https://openalex.org/W2116432534","https://openalex.org/W2126742636","https://openalex.org/W2127143129","https://openalex.org/W2128016314","https://openalex.org/W2134026743","https://openalex.org/W2138008048","https://openalex.org/W2138731801","https://openalex.org/W2138922826","https://openalex.org/W2141828080","https://openalex.org/W2143513578","https://openalex.org/W2146222452","https://openalex.org/W2152973363","https://openalex.org/W2153216447","https://openalex.org/W2154139219","https://openalex.org/W2158117993","https://openalex.org/W2158895096","https://openalex.org/W2160978606","https://openalex.org/W4244818997","https://openalex.org/W4248160505"],"related_works":["https://openalex.org/W2769050893","https://openalex.org/W1977805690","https://openalex.org/W2003343781","https://openalex.org/W2367624822","https://openalex.org/W2808331510","https://openalex.org/W2144270675","https://openalex.org/W2071178303","https://openalex.org/W2090384119","https://openalex.org/W4288427168","https://openalex.org/W2158895096"],"abstract_inverted_index":{"The":[0,11],"Pseudogene.org":[1],"knowledgebase":[2],"serves":[3],"as":[4],"a":[5,14,36,58,65,101,143,167],"comprehensive":[6],"repository":[7],"for":[8,44,85,114,130,140],"pseudogene":[9,15],"annotation.":[10],"definition":[12],"of":[13,28,39,60,72,76,88,93,105,126,146,169],"varies":[16],"within":[17],"the":[18,26,79,86,91,112,120,127,149,152],"literature,":[19],"resulting":[20],"in":[21,41],"significantly":[22],"different":[23],"approaches":[24],"to":[25,34,52,78,99,122],"problem":[27],"identification.":[29],"Consequently,":[30],"it":[31],"is":[32,50],"difficult":[33],"maintain":[35],"consistent":[37],"collection":[38,168],"pseudogenes":[40,73,158],"detail":[42],"necessary":[43],"their":[45],"effective":[46],"use.":[47],"Our":[48],"database":[49,128,153],"designed":[51,139],"address":[53],"this":[54],"issue.":[55],"It":[56],"integrates":[57],"variety":[59],"heterogeneous":[61],"resources":[62],"and":[63,90,134,162],"supports":[64],"subset":[66],"structure":[67],"that":[68,74],"highlights":[69],"specific":[70],"groups":[71],"are":[75,83],"interest":[77],"research":[80],"community.":[81],"Tools":[82],"provided":[84],"comparison":[87],"sets":[89],"creation":[92],"layered":[94],"set":[95,104],"unions,":[96],"enabling":[97],"researchers":[98,141],"derive":[100],"current":[102],"'consensus'":[103],"pseudogenes.":[106],"Additional":[107],"features":[108],"include":[109],"versatile":[110],"search,":[111],"capacity":[113],"robust":[115],"interaction":[116],"with":[117,142],"other":[118],"databases,":[119],"ability":[121],"reconstruct":[123],"older":[124],"versions":[125],"(accounting":[129],"changing":[131],"genome":[132],"builds)":[133],"an":[135],"underlying":[136],"object-oriented":[137],"interface":[138],"minimal":[144],"knowledge":[145],"programming.":[147],"At":[148],"present":[150],"time,":[151],"contains":[154],"more":[155],"than":[156],"100,000":[157],"spanning":[159],"64":[160],"prokaryote":[161],"11":[163],"eukaryote":[164],"genomes,":[165],"including":[166],"human":[170],"annotations":[171],"compiled":[172],"from":[173],"16":[174],"sources.":[175]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":19},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":14},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":9},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":7},{"year":2016,"cited_by_count":14},{"year":2015,"cited_by_count":5},{"year":2014,"cited_by_count":20},{"year":2013,"cited_by_count":15},{"year":2012,"cited_by_count":13}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
