{"id":"https://openalex.org/W2154205489","doi":"https://doi.org/10.1093/nar/gkl850","title":"EVEREST: a collection of evolutionary conserved protein domains","display_name":"EVEREST: a collection of evolutionary conserved protein domains","publication_year":2006,"publication_date":"2006-11-13","ids":{"openalex":"https://openalex.org/W2154205489","doi":"https://doi.org/10.1093/nar/gkl850","mag":"2154205489","pmid":"https://pubmed.ncbi.nlm.nih.gov/17099230"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkl850","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkl850","pdf_url":"https://academic.oup.com/nar/article-pdf/35/suppl_1/D241/3843893/gkl850.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/35/suppl_1/D241/3843893/gkl850.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5010914577","display_name":"Elon Portugaly","orcid":null},"institutions":[{"id":"https://openalex.org/I4210118921","display_name":"Institute of Life Sciences","ror":"https://ror.org/02927dx12","country_code":"IN","type":"education","lineage":["https://openalex.org/I2799351866","https://openalex.org/I4210118921","https://openalex.org/I4210134808"]},{"id":"https://openalex.org/I197251160","display_name":"Hebrew University of Jerusalem","ror":"https://ror.org/03qxff017","country_code":"IL","type":"education","lineage":["https://openalex.org/I197251160"]}],"countries":["IL","IN"],"is_corresponding":true,"raw_author_name":"E. Portugaly","raw_affiliation_strings":["School of Computer Science & Engineering, Institute of Life Sciences, The Hebrew University of Jerusalem. elonp@cs.huji.ac.il"],"affiliations":[{"raw_affiliation_string":"School of Computer Science & Engineering, Institute of Life Sciences, The Hebrew University of Jerusalem. elonp@cs.huji.ac.il","institution_ids":["https://openalex.org/I197251160","https://openalex.org/I4210118921"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050009387","display_name":"Nathan Linial","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"N. Linial","raw_affiliation_strings":["School of Computer Science & Engineering and"],"affiliations":[{"raw_affiliation_string":"School of Computer Science & Engineering and","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5085924022","display_name":"Michal Linial","orcid":"https://orcid.org/0000-0002-9357-4526"},"institutions":[{"id":"https://openalex.org/I197251160","display_name":"Hebrew University of Jerusalem","ror":"https://ror.org/03qxff017","country_code":"IL","type":"education","lineage":["https://openalex.org/I197251160"]},{"id":"https://openalex.org/I4210118921","display_name":"Institute of Life Sciences","ror":"https://ror.org/02927dx12","country_code":"IN","type":"education","lineage":["https://openalex.org/I2799351866","https://openalex.org/I4210118921","https://openalex.org/I4210134808"]}],"countries":["IL","IN"],"is_corresponding":false,"raw_author_name":"M. Linial","raw_affiliation_strings":["Department of Biological Chemistry, Institute of Life Sciences, The Hebrew University of Jerusalem","1Department of Biological Chemistry, Institute of Life SciencesThe Hebrew University of Jerusalem"],"affiliations":[{"raw_affiliation_string":"Department of Biological Chemistry, Institute of Life Sciences, The Hebrew University of Jerusalem","institution_ids":["https://openalex.org/I197251160","https://openalex.org/I4210118921"]},{"raw_affiliation_string":"1Department of Biological Chemistry, Institute of Life SciencesThe Hebrew University of Jerusalem","institution_ids":["https://openalex.org/I197251160","https://openalex.org/I4210118921"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5010914577"],"corresponding_institution_ids":["https://openalex.org/I197251160","https://openalex.org/I4210118921"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":1.226,"has_fulltext":true,"cited_by_count":22,"citation_normalized_percentile":{"value":0.77888644,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"35","issue":"Database","first_page":"D241","last_page":"D246"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9958999752998352,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9940999746322632,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/uniprot","display_name":"UniProt","score":0.8983064889907837},{"id":"https://openalex.org/keywords/upload","display_name":"Upload","score":0.624539315700531},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.6164238452911377},{"id":"https://openalex.org/keywords/protein-sequencing","display_name":"Protein sequencing","score":0.5715599060058594},{"id":"https://openalex.org/keywords/protein-domain","display_name":"Protein domain","score":0.5566672086715698},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5399577021598816},{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.5378602743148804},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5180511474609375},{"id":"https://openalex.org/keywords/novelty","display_name":"Novelty","score":0.49722984433174133},{"id":"https://openalex.org/keywords/protein-family","display_name":"Protein family","score":0.4535258412361145},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.41410937905311584},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.41193675994873047},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.36208346486091614},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.337928831577301},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.24709054827690125},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.23242974281311035},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.1472405195236206},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.14424383640289307}],"concepts":[{"id":"https://openalex.org/C202264299","wikidata":"https://www.wikidata.org/wiki/Q905695","display_name":"UniProt","level":3,"score":0.8983064889907837},{"id":"https://openalex.org/C71901391","wikidata":"https://www.wikidata.org/wiki/Q7126699","display_name":"Upload","level":2,"score":0.624539315700531},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.6164238452911377},{"id":"https://openalex.org/C10010492","wikidata":"https://www.wikidata.org/wiki/Q3142557","display_name":"Protein sequencing","level":4,"score":0.5715599060058594},{"id":"https://openalex.org/C144292202","wikidata":"https://www.wikidata.org/wiki/Q898273","display_name":"Protein domain","level":3,"score":0.5566672086715698},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5399577021598816},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.5378602743148804},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5180511474609375},{"id":"https://openalex.org/C2778738651","wikidata":"https://www.wikidata.org/wiki/Q16546687","display_name":"Novelty","level":2,"score":0.49722984433174133},{"id":"https://openalex.org/C171897839","wikidata":"https://www.wikidata.org/wiki/Q417841","display_name":"Protein family","level":3,"score":0.4535258412361145},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.41410937905311584},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.41193675994873047},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.36208346486091614},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.337928831577301},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.24709054827690125},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.23242974281311035},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.1472405195236206},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.14424383640289307},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C27206212","wikidata":"https://www.wikidata.org/wiki/Q34178","display_name":"Theology","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017124","descriptor_name":"Conserved Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017124","descriptor_name":"Conserved Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017124","descriptor_name":"Conserved Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":8,"locations":[{"id":"doi:10.1093/nar/gkl850","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkl850","pdf_url":"https://academic.oup.com/nar/article-pdf/35/suppl_1/D241/3843893/gkl850.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:17099230","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17099230","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.579.6425","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.579.6425","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/content/early/2006/11/11/nar.gkl850.full-text-lowres.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.620.4462","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.620.4462","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/content/early/2006/12/08/nar.gkl850.full.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.627.7708","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.627.7708","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/content/35/suppl_1/D241.full-text-lowres.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.627.9052","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.627.9052","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/content/early/2006/11/11/nar.gkl850.full.pdf","raw_type":"text"},{"id":"pmh:oai:europepmc.org:2284752","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/1669739","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:1669739","is_oa":true,"landing_page_url":"http://doi.org/10.1093/nar/gkl850","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkl850","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkl850","pdf_url":"https://academic.oup.com/nar/article-pdf/35/suppl_1/D241/3843893/gkl850.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320320290","display_name":"University of Oxford","ror":"https://ror.org/052gg0110"},{"id":"https://openalex.org/F4320321950","display_name":"Hebrew University of Jerusalem","ror":"https://ror.org/03qxff017"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2154205489.pdf","grobid_xml":"https://content.openalex.org/works/W2154205489.grobid-xml"},"referenced_works_count":19,"referenced_works":["https://openalex.org/W1585496828","https://openalex.org/W2007745123","https://openalex.org/W2010352922","https://openalex.org/W2087885007","https://openalex.org/W2095318832","https://openalex.org/W2096525273","https://openalex.org/W2102424043","https://openalex.org/W2117077088","https://openalex.org/W2119195082","https://openalex.org/W2124145810","https://openalex.org/W2126377763","https://openalex.org/W2130479394","https://openalex.org/W2136280642","https://openalex.org/W2141885858","https://openalex.org/W2157190239","https://openalex.org/W2161732286","https://openalex.org/W4210531204","https://openalex.org/W4230903726","https://openalex.org/W4235848672"],"related_works":["https://openalex.org/W2161189461","https://openalex.org/W2995791842","https://openalex.org/W2803517106","https://openalex.org/W4240507550","https://openalex.org/W2087903152","https://openalex.org/W1967142621","https://openalex.org/W2157190239","https://openalex.org/W2154205489","https://openalex.org/W4306831161","https://openalex.org/W2137488129"],"abstract_inverted_index":{"Protein":[0],"domains":[1,31],"are":[2,13],"subunits":[3],"of":[4,21,69,99,106,112,139,141,149,162,182],"proteins":[5,151],"that":[6,28,53],"recur":[7],"throughout":[8],"the":[9,19,55,100,137,146,150,153,180],"protein":[10,23,30,59],"world.":[11],"There":[12],"many":[14],"definitions":[15],"attempting":[16],"to":[17,160],"capture":[18],"essence":[20],"a":[22],"domain,":[24],"and":[25,32,89,109,130,168,200],"several":[26],"systems":[27],"identify":[29],"classify":[33],"them":[34],"into":[35],"families.":[36,102,184],"EVEREST,":[37],"recently":[38],"described":[39],"in":[40,152],"Portugaly":[41],"et":[42],"al.":[43],"(2006)":[44],"BMC":[45],"Bioinformatics,":[46],"7,":[47],"277,":[48],"is":[49,116],"one":[50,75],"such":[51],"system":[52],"performs":[54],"task":[56],"automatically,":[57],"using":[58],"sequence":[60],"alone.":[61],"Herein":[62],"we":[63],"describe":[64],"EVEREST":[65,81,101,103,115,183],"release":[66],"2.0,":[67],"consisting":[68],"20,029":[70],"families,":[71,166],"each":[72,98,140],"defined":[73],"by":[74,85,125,179],"or":[76],"more":[77],"HMMs.":[78],"The":[79,120,155],"current":[80],"database":[82],"was":[83],"constructed":[84],"scanning":[86],"UniProt":[87],"8.1":[88],"all":[90,107,113],"PDB":[91],"sequences":[92,176],"(total":[93],"over":[94],"3,000,000":[95],"sequences)":[96],"with":[97],"annotates":[104],"64%":[105],"sequences,":[108],"covers":[110],"59%":[111],"residues.":[114],"available":[117],"at":[118],"http://www.everest.cs.huji.ac.il/.":[119],"website":[121,156],"provides":[122,158],"annotations":[123],"given":[124],"SCOP,":[126],"CATH,":[127],"Pfam":[128],"A":[129],"EVEREST.":[131],"It":[132],"allows":[133,190],"for":[134,177,192],"browsing":[135],"through":[136],"families":[138,193],"those":[142],"sources,":[143],"graphically":[144],"visualizing":[145],"domain":[147,165,170],"organization":[148],"family.":[154],"also":[157],"access":[159],"analyzes":[161],"relationships":[163],"between":[164],"within":[167],"across":[169],"definition":[171],"systems.":[172],"Users":[173],"can":[174],"upload":[175],"analysis":[178],"set":[181],"Finally":[185],"an":[186],"advanced":[187],"search":[188],"form":[189],"querying":[191],"matching":[194],"criteria":[195],"regarding":[196],"novelty,":[197],"phylogenetic":[198],"composition":[199],"more.":[201]},"counts_by_year":[{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":3},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}