{"id":"https://openalex.org/W2118683262","doi":"https://doi.org/10.1093/nar/gkl847","title":"The Sulfolobus database","display_name":"The Sulfolobus database","publication_year":2006,"publication_date":"2006-11-07","ids":{"openalex":"https://openalex.org/W2118683262","doi":"https://doi.org/10.1093/nar/gkl847","mag":"2118683262","pmid":"https://pubmed.ncbi.nlm.nih.gov/17088281"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkl847","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkl847","pdf_url":"https://academic.oup.com/nar/article-pdf/35/suppl_1/D413/3841934/gkl847.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/35/suppl_1/D413/3841934/gkl847.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5039521123","display_name":"Kim Br\u00fcgger","orcid":"https://orcid.org/0000-0002-1085-0653"},"institutions":[{"id":"https://openalex.org/I124055696","display_name":"University of Copenhagen","ror":"https://ror.org/035b05819","country_code":"DK","type":"education","lineage":["https://openalex.org/I124055696"]}],"countries":["DK"],"is_corresponding":true,"raw_author_name":"K. Brugger","raw_affiliation_strings":["Institute of Molecular Biology, University of Copenhagen, S\u00f8lvgade 83H, DK1307 Copenhagen K, Denmark. brugger@mermaid.molbio.ku.dk","Institute of Molecular Biology, University of Copenhagen, S\u00f8lvgade 83H, DK1307 Copenhagen K, Denmark"],"affiliations":[{"raw_affiliation_string":"Institute of Molecular Biology, University of Copenhagen, S\u00f8lvgade 83H, DK1307 Copenhagen K, Denmark. brugger@mermaid.molbio.ku.dk","institution_ids":["https://openalex.org/I124055696"]},{"raw_affiliation_string":"Institute of Molecular Biology, University of Copenhagen, S\u00f8lvgade 83H, DK1307 Copenhagen K, Denmark","institution_ids":["https://openalex.org/I124055696"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5039521123"],"corresponding_institution_ids":["https://openalex.org/I124055696"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":1.0898,"has_fulltext":true,"cited_by_count":14,"citation_normalized_percentile":{"value":0.75625689,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"35","issue":"Database","first_page":"D413","last_page":"D415"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10602","display_name":"Glycosylation and Glycoproteins Research","score":0.9916999936103821,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/sulfolobus","display_name":"Sulfolobus","score":0.8663140535354614},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6653954982757568},{"id":"https://openalex.org/keywords/genbank","display_name":"GenBank","score":0.5450282096862793},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.47947391867637634},{"id":"https://openalex.org/keywords/crenarchaeota","display_name":"Crenarchaeota","score":0.44903847575187683},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.37708404660224915},{"id":"https://openalex.org/keywords/archaea","display_name":"Archaea","score":0.34468746185302734},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.33502188324928284},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.28954389691352844},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.277243047952652}],"concepts":[{"id":"https://openalex.org/C2778644216","wikidata":"https://www.wikidata.org/wiki/Q1209791","display_name":"Sulfolobus","level":4,"score":0.8663140535354614},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6653954982757568},{"id":"https://openalex.org/C79029880","wikidata":"https://www.wikidata.org/wiki/Q901755","display_name":"GenBank","level":3,"score":0.5450282096862793},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.47947391867637634},{"id":"https://openalex.org/C2776353733","wikidata":"https://www.wikidata.org/wiki/Q499078","display_name":"Crenarchaeota","level":4,"score":0.44903847575187683},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.37708404660224915},{"id":"https://openalex.org/C550995028","wikidata":"https://www.wikidata.org/wiki/Q10872","display_name":"Archaea","level":3,"score":0.34468746185302734},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.33502188324928284},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.28954389691352844},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.277243047952652}],"mesh":[{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016944","descriptor_name":"Sulfolobus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016944","descriptor_name":"Sulfolobus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016944","descriptor_name":"Sulfolobus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D019766","descriptor_name":"Genes, Archaeal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019766","descriptor_name":"Genes, Archaeal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019766","descriptor_name":"Genes, Archaeal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019847","descriptor_name":"Chromosomes, Archaeal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019847","descriptor_name":"Chromosomes, Archaeal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019847","descriptor_name":"Chromosomes, Archaeal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020745","descriptor_name":"Genome, Archaeal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020745","descriptor_name":"Genome, Archaeal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020745","descriptor_name":"Genome, Archaeal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1093/nar/gkl847","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkl847","pdf_url":"https://academic.oup.com/nar/article-pdf/35/suppl_1/D413/3841934/gkl847.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:17088281","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17088281","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.108.187","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.108.187","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/cgi/reprint/gkl847v1.pdf","raw_type":"text"},{"id":"pmh:oai:europepmc.org:2284749","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/1669736","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:1669736","is_oa":true,"landing_page_url":"http://doi.org/10.1093/nar/gkl847","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkl847","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkl847","pdf_url":"https://academic.oup.com/nar/article-pdf/35/suppl_1/D413/3841934/gkl847.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5600000023841858,"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17"}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2118683262.pdf","grobid_xml":"https://content.openalex.org/works/W2118683262.grobid-xml"},"referenced_works_count":19,"referenced_works":["https://openalex.org/W1994608549","https://openalex.org/W2000370227","https://openalex.org/W2001832090","https://openalex.org/W2013595954","https://openalex.org/W2019531245","https://openalex.org/W2030855533","https://openalex.org/W2087583350","https://openalex.org/W2096778187","https://openalex.org/W2098424996","https://openalex.org/W2110612352","https://openalex.org/W2136280642","https://openalex.org/W2148004368","https://openalex.org/W2152770371","https://openalex.org/W2155606054","https://openalex.org/W2161732286","https://openalex.org/W2161746138","https://openalex.org/W2165674132","https://openalex.org/W4244818997","https://openalex.org/W4300437402"],"related_works":["https://openalex.org/W4240162843","https://openalex.org/W4207021097","https://openalex.org/W2009766153","https://openalex.org/W2782208807","https://openalex.org/W4249618988","https://openalex.org/W2068943170","https://openalex.org/W1910212571","https://openalex.org/W2391746223","https://openalex.org/W2151046304","https://openalex.org/W1527997185"],"abstract_inverted_index":{"The":[0,85,124],"Sulfolobus":[1,12,32,86,100],"database":[2,45,87,125,162],"(http://www.sulfolobus.org)":[3],"integrates,":[4],"for":[5,24,105],"the":[6,21,25,44,53,66,94,106,110,138,161],"first":[7,122],"time,":[8],"all":[9,20,58,70],"currently":[10],"available":[11],"chromosome":[13],"sequences":[14,54],"with":[15,99],"annotations.":[16],"It":[17,112],"also":[18],"includes":[19,140,173],"sequence":[22,133],"data":[23,153],"extrachromosomal":[26],"elements":[27],"which":[28],"can":[29],"propagate":[30],"in":[31,39,43,65,120],"organisms.":[33],"All":[34],"genomes":[35],"and":[36,46,63,80,134,137,145,152,160,180],"annotations":[37,156,179],"deposited":[38],"GenBank":[40],"are":[41,61,72,83,157],"included":[42],"a":[47,75,102],"genefinder":[48],"has":[49],"been":[50],"run":[51],"on":[52],"to":[55,93,127,132,165],"ensure":[56],"that":[57,116],"potential":[59],"genes":[60,71],"present,":[62],"identifiable,":[64],"database.":[67],"Every":[68],"month,":[69],"searched":[73],"against":[74],"range":[76],"of":[77,109],"external":[78],"databases":[79],"new":[81,168,174],"results":[82],"incorporated.":[84],"was":[88,113],"developed":[89],"as":[90,101,147,149,167],"an":[91],"asset":[92],"rapidly-growing":[95],"international":[96],"community":[97],"working":[98],"model":[103],"organism":[104],"kingdom":[107],"Crenarchaeota":[108],"Archaea.":[111],"accessed":[114],"more":[115],"46":[117],"000":[118],"times":[119],"its":[121],"year.":[123],"aims":[126],"provide":[128],"researchers":[129],"easy":[130],"access":[131],"gene":[135],"information":[136,169],"web-interface":[139],"various":[141],"searches,":[142],"free":[143],"text":[144],"BLAST,":[146],"well":[148],"genome":[150],"browsing":[151],"extraction.":[154],"Updated":[155],"incorporated":[158],"regularly":[159],"will":[163],"continue":[164],"expand":[166],"becomes":[170],"available.":[171],"This":[172],"sequences,":[175],"newly":[176],"identified":[177],"genes,":[178],"other":[181],"related":[182],"information.":[183]},"counts_by_year":[{"year":2016,"cited_by_count":1},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
