{"id":"https://openalex.org/W2007789333","doi":"https://doi.org/10.1093/nar/gkl837","title":"fRNAdb: a platform for mining/annotating functional RNA candidates from non-coding RNA sequences","display_name":"fRNAdb: a platform for mining/annotating functional RNA candidates from non-coding RNA sequences","publication_year":2006,"publication_date":"2006-11-14","ids":{"openalex":"https://openalex.org/W2007789333","doi":"https://doi.org/10.1093/nar/gkl837","mag":"2007789333","pmid":"https://pubmed.ncbi.nlm.nih.gov/17099231"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkl837","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkl837","pdf_url":"https://academic.oup.com/nar/article-pdf/35/suppl_1/D145/3839909/gkl837.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/35/suppl_1/D145/3839909/gkl837.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5074525731","display_name":"Tatsuya Kin","orcid":"https://orcid.org/0000-0002-5179-6067"},"institutions":[{"id":"https://openalex.org/I73613424","display_name":"National Institute of Advanced Industrial Science and Technology","ror":"https://ror.org/01703db54","country_code":"JP","type":"government","lineage":["https://openalex.org/I73613424"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"T. Kin","raw_affiliation_strings":["Computational Biology Research Center, National Institute of Advanced Industrial Science and Technology (AIST) Aomi 2-42, Koto-ku, Tokyo 135-0064, Japan. kin-taushin@aist.go.jp","Computational Biology Research Center, National Institute of Advanced Industrial Science and Technology (AIST) Aomi 2-42, Koto-ku, Tokyo 135-0064, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Biology Research Center, National Institute of Advanced Industrial Science and Technology (AIST) Aomi 2-42, Koto-ku, Tokyo 135-0064, Japan. kin-taushin@aist.go.jp","institution_ids":["https://openalex.org/I73613424"]},{"raw_affiliation_string":"Computational Biology Research Center, National Institute of Advanced Industrial Science and Technology (AIST) Aomi 2-42, Koto-ku, Tokyo 135-0064, Japan","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079018881","display_name":"Kaori Yamada","orcid":"https://orcid.org/0000-0003-4075-9866"},"institutions":[{"id":"https://openalex.org/I4210165074","display_name":"Information and Mathematical Science and Bioinformatics (Japan)","ror":"https://ror.org/05rgpb984","country_code":"JP","type":"company","lineage":["https://openalex.org/I4210165074"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"K. Yamada","raw_affiliation_strings":["Information and Mathematical Science Laboratory, 1-5-21Oh-tsuka, Bunkyo-ku, Tokyo 112-0012, Japan","3Information and Mathematical Science Laboratory, 1-5-21Oh-tsuka, Bunkyo-ku, Tokyo 112-0012, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Information and Mathematical Science Laboratory, 1-5-21Oh-tsuka, Bunkyo-ku, Tokyo 112-0012, Japan","institution_ids":["https://openalex.org/I4210165074"]},{"raw_affiliation_string":"3Information and Mathematical Science Laboratory, 1-5-21Oh-tsuka, Bunkyo-ku, Tokyo 112-0012, Japan","institution_ids":["https://openalex.org/I4210165074"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078752284","display_name":"Goro Terai","orcid":"https://orcid.org/0000-0002-1059-2519"},"institutions":[{"id":"https://openalex.org/I205823427","display_name":"Kyowa Kirin (Japan)","ror":"https://ror.org/000wej815","country_code":"JP","type":"company","lineage":["https://openalex.org/I205823427"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"G. Terai","raw_affiliation_strings":["Intec Web and Genome Informatics, 1-3-3 ShinsunaKoto-ku, Tokyo 136-0075, Japan","2Intec Web and Genome Informatics, 1-3-3 ShinsunaKoto-ku, Tokyo 136-0075, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Intec Web and Genome Informatics, 1-3-3 ShinsunaKoto-ku, Tokyo 136-0075, Japan","institution_ids":["https://openalex.org/I205823427"]},{"raw_affiliation_string":"2Intec Web and Genome Informatics, 1-3-3 ShinsunaKoto-ku, Tokyo 136-0075, Japan","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041406590","display_name":"Hiroaki Okida","orcid":null},"institutions":[{"id":"https://openalex.org/I205823427","display_name":"Kyowa Kirin (Japan)","ror":"https://ror.org/000wej815","country_code":"JP","type":"company","lineage":["https://openalex.org/I205823427"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"H. Okida","raw_affiliation_strings":["Intec Web and Genome Informatics, 1-3-3 ShinsunaKoto-ku, Tokyo 136-0075, Japan","2Intec Web and Genome Informatics, 1-3-3 ShinsunaKoto-ku, Tokyo 136-0075, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Intec Web and Genome Informatics, 1-3-3 ShinsunaKoto-ku, Tokyo 136-0075, Japan","institution_ids":["https://openalex.org/I205823427"]},{"raw_affiliation_string":"2Intec Web and Genome Informatics, 1-3-3 ShinsunaKoto-ku, Tokyo 136-0075, Japan","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052642493","display_name":"Yasuhiko Yoshinari","orcid":null},"institutions":[{"id":"https://openalex.org/I113974858","display_name":"Mitsubishi Research Institute (Japan)","ror":"https://ror.org/02vq4f039","country_code":"JP","type":"company","lineage":["https://openalex.org/I113974858","https://openalex.org/I1306287861"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Y. Yoshinari","raw_affiliation_strings":["Mitsubishi Research Institute, 2-3-6O-temachi, Chiyoda-ku, Tokyo 100-8140, Japan","4Mitsubishi Research Institute, 2-3-6O-temachi, Chiyoda-ku, Tokyo 100-8140, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Mitsubishi Research Institute, 2-3-6O-temachi, Chiyoda-ku, Tokyo 100-8140, Japan","institution_ids":["https://openalex.org/I113974858"]},{"raw_affiliation_string":"4Mitsubishi Research Institute, 2-3-6O-temachi, Chiyoda-ku, Tokyo 100-8140, Japan","institution_ids":["https://openalex.org/I113974858"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084269921","display_name":"Yosuke Ono","orcid":"https://orcid.org/0000-0002-7257-0120"},"institutions":[{"id":"https://openalex.org/I4210165074","display_name":"Information and Mathematical Science and Bioinformatics (Japan)","ror":"https://ror.org/05rgpb984","country_code":"JP","type":"company","lineage":["https://openalex.org/I4210165074"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Y. Ono","raw_affiliation_strings":["Information and Mathematical Science Laboratory, 1-5-21Oh-tsuka, Bunkyo-ku, Tokyo 112-0012, Japan","3Information and Mathematical Science Laboratory, 1-5-21Oh-tsuka, Bunkyo-ku, Tokyo 112-0012, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Information and Mathematical Science Laboratory, 1-5-21Oh-tsuka, Bunkyo-ku, Tokyo 112-0012, Japan","institution_ids":["https://openalex.org/I4210165074"]},{"raw_affiliation_string":"3Information and Mathematical Science Laboratory, 1-5-21Oh-tsuka, Bunkyo-ku, Tokyo 112-0012, Japan","institution_ids":["https://openalex.org/I4210165074"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112208936","display_name":"A. Kojima","orcid":null},"institutions":[{"id":"https://openalex.org/I205823427","display_name":"Kyowa Kirin (Japan)","ror":"https://ror.org/000wej815","country_code":"JP","type":"company","lineage":["https://openalex.org/I205823427"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"A. Kojima","raw_affiliation_strings":["Intec Web and Genome Informatics, 1-3-3 ShinsunaKoto-ku, Tokyo 136-0075, Japan","2Intec Web and Genome Informatics, 1-3-3 ShinsunaKoto-ku, Tokyo 136-0075, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Intec Web and Genome Informatics, 1-3-3 ShinsunaKoto-ku, Tokyo 136-0075, Japan","institution_ids":["https://openalex.org/I205823427"]},{"raw_affiliation_string":"2Intec Web and Genome Informatics, 1-3-3 ShinsunaKoto-ku, Tokyo 136-0075, Japan","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053354487","display_name":"Yasuaki Kimura","orcid":"https://orcid.org/0000-0002-3609-602X"},"institutions":[{"id":"https://openalex.org/I4210165074","display_name":"Information and Mathematical Science and Bioinformatics (Japan)","ror":"https://ror.org/05rgpb984","country_code":"JP","type":"company","lineage":["https://openalex.org/I4210165074"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Y. Kimura","raw_affiliation_strings":["Information and Mathematical Science Laboratory, 1-5-21Oh-tsuka, Bunkyo-ku, Tokyo 112-0012, Japan","3Information and Mathematical Science Laboratory, 1-5-21Oh-tsuka, Bunkyo-ku, Tokyo 112-0012, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Information and Mathematical Science Laboratory, 1-5-21Oh-tsuka, Bunkyo-ku, Tokyo 112-0012, Japan","institution_ids":["https://openalex.org/I4210165074"]},{"raw_affiliation_string":"3Information and Mathematical Science Laboratory, 1-5-21Oh-tsuka, Bunkyo-ku, Tokyo 112-0012, Japan","institution_ids":["https://openalex.org/I4210165074"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034279785","display_name":"Takashi Komori","orcid":"https://orcid.org/0000-0002-6812-2149"},"institutions":[{"id":"https://openalex.org/I205823427","display_name":"Kyowa Kirin (Japan)","ror":"https://ror.org/000wej815","country_code":"JP","type":"company","lineage":["https://openalex.org/I205823427"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"T. Komori","raw_affiliation_strings":["Intec Web and Genome Informatics, 1-3-3 ShinsunaKoto-ku, Tokyo 136-0075, Japan","2Intec Web and Genome Informatics, 1-3-3 ShinsunaKoto-ku, Tokyo 136-0075, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Intec Web and Genome Informatics, 1-3-3 ShinsunaKoto-ku, Tokyo 136-0075, Japan","institution_ids":["https://openalex.org/I205823427"]},{"raw_affiliation_string":"2Intec Web and Genome Informatics, 1-3-3 ShinsunaKoto-ku, Tokyo 136-0075, Japan","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5035572759","display_name":"Kei Asai","orcid":"https://orcid.org/0000-0002-2454-0883"},"institutions":[{"id":"https://openalex.org/I73613424","display_name":"National Institute of Advanced Industrial Science and Technology","ror":"https://ror.org/01703db54","country_code":"JP","type":"government","lineage":["https://openalex.org/I73613424"]},{"id":"https://openalex.org/I74801974","display_name":"The University of Tokyo","ror":"https://ror.org/057zh3y96","country_code":"JP","type":"education","lineage":["https://openalex.org/I74801974"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"K. Asai","raw_affiliation_strings":["Computational Biology Research Center, National Institute of Advanced Industrial Science and Technology (AIST)Aomi 2-42, Koto-ku, Tokyo 135-0064, Japan","Department of Computational Biology, Graduate School of Frontier SciencesUniversity of Tokyo, 5-1-5 Kashiwa-no-ha, Chiba 277-8583, Japan","1Computational Biology Research Center, National Institute of Advanced Industrial Science and Technology (AIST)Aomi 2-42, Koto-ku, Tokyo 135-0064, Japan","5Department of Computational Biology, Graduate School of Frontier SciencesUniversity of Tokyo, 5-1-5 Kashiwa-no-ha, Chiba 277-8583, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Biology Research Center, National Institute of Advanced Industrial Science and Technology (AIST)Aomi 2-42, Koto-ku, Tokyo 135-0064, Japan","institution_ids":["https://openalex.org/I73613424"]},{"raw_affiliation_string":"Department of Computational Biology, Graduate School of Frontier SciencesUniversity of Tokyo, 5-1-5 Kashiwa-no-ha, Chiba 277-8583, Japan","institution_ids":["https://openalex.org/I74801974"]},{"raw_affiliation_string":"1Computational Biology Research Center, National Institute of Advanced Industrial Science and Technology (AIST)Aomi 2-42, Koto-ku, Tokyo 135-0064, Japan","institution_ids":["https://openalex.org/I73613424"]},{"raw_affiliation_string":"5Department of Computational Biology, Graduate School of Frontier SciencesUniversity of Tokyo, 5-1-5 Kashiwa-no-ha, Chiba 277-8583, Japan","institution_ids":["https://openalex.org/I74801974"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5074525731"],"corresponding_institution_ids":["https://openalex.org/I73613424"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":2.726,"has_fulltext":true,"cited_by_count":149,"citation_normalized_percentile":{"value":0.8966514,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":100},"biblio":{"volume":"35","issue":"Database","first_page":"D145","last_page":"D148"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.8284492492675781},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.705978274345398},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6370105147361755},{"id":"https://openalex.org/keywords/non-coding-rna","display_name":"Non-coding RNA","score":0.5682309865951538},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.4111621379852295},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.37442854046821594}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8284492492675781},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.705978274345398},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6370105147361755},{"id":"https://openalex.org/C194993378","wikidata":"https://www.wikidata.org/wiki/Q427087","display_name":"Non-coding RNA","level":4,"score":0.5682309865951538},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4111621379852295},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.37442854046821594}],"mesh":[{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D022661","descriptor_name":"RNA, Untranslated","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D022661","descriptor_name":"RNA, Untranslated","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D022661","descriptor_name":"RNA, Untranslated","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D022661","descriptor_name":"RNA, Untranslated","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D022661","descriptor_name":"RNA, Untranslated","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D022661","descriptor_name":"RNA, Untranslated","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false}],"locations_count":8,"locations":[{"id":"doi:10.1093/nar/gkl837","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkl837","pdf_url":"https://academic.oup.com/nar/article-pdf/35/suppl_1/D145/3839909/gkl837.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:17099231","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17099231","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.281.1195","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.281.1195","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ftp://ftp.ncbi.nlm.nih.gov/pub/pmc/75/df/Nucleic_Acids_Res_2007_Jan_11_35(Database_issue)_D145-D148.tar.gz","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.328.9561","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.328.9561","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/content/early/2006/11/11/nar.gkl837.full.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.334.2380","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.334.2380","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/content/35/suppl_1/D145.full-text-lowres.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.930.6871","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.930.6871","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/content/35/suppl_1/D145.full.pdf","raw_type":"text"},{"id":"pmh:oai:europepmc.org:2284766","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/1669753","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:1669753","is_oa":true,"landing_page_url":"http://doi.org/10.1093/nar/gkl837","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkl837","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkl837","pdf_url":"https://academic.oup.com/nar/article-pdf/35/suppl_1/D145/3839909/gkl837.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320311508","display_name":"National Institute of Advanced Industrial Science and Technology","ror":"https://ror.org/01703db54"},{"id":"https://openalex.org/F4320321679","display_name":"Ministry of Economy, Trade and Industry","ror":"https://ror.org/055tm7f07"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2007789333.pdf","grobid_xml":"https://content.openalex.org/works/W2007789333.grobid-xml"},"referenced_works_count":21,"referenced_works":["https://openalex.org/W1974736226","https://openalex.org/W1978536034","https://openalex.org/W1984136932","https://openalex.org/W2007006753","https://openalex.org/W2017199818","https://openalex.org/W2050869737","https://openalex.org/W2083381199","https://openalex.org/W2099275700","https://openalex.org/W2100990361","https://openalex.org/W2112192177","https://openalex.org/W2124268899","https://openalex.org/W2127861583","https://openalex.org/W2133992949","https://openalex.org/W2136725005","https://openalex.org/W2145928119","https://openalex.org/W2146120203","https://openalex.org/W2149429041","https://openalex.org/W2154085311","https://openalex.org/W2162825358","https://openalex.org/W2915985519","https://openalex.org/W4250052351"],"related_works":["https://openalex.org/W2147993839","https://openalex.org/W1840103016","https://openalex.org/W2034625591","https://openalex.org/W2058984380","https://openalex.org/W1988125422","https://openalex.org/W2900182103","https://openalex.org/W4365136234","https://openalex.org/W3183769948","https://openalex.org/W2010385783","https://openalex.org/W2600828970"],"abstract_inverted_index":{"There":[0],"are":[1],"abundance":[2],"of":[3,17,34,60,75,90],"transcripts":[4,19,36,56,77,129],"that":[5,12,70],"code":[6],"for":[7],"no":[8],"particular":[9,128],"protein":[10,114],"and":[11,86],"remain":[13],"functionally":[14],"uncharacterized.":[15],"Some":[16],"these":[18],"may":[20],"have":[21,93],"novel":[22,67],"functions":[23],"while":[24],"others":[25],"might":[26],"be":[27],"junk":[28],"transcripts.":[29,62],"Unfortunately,":[30],"the":[31,82,97],"experimental":[32],"validation":[33],"such":[35],"to":[37,51,123,134],"find":[38],"functional":[39,55,137],"non-coding":[40,76],"RNA":[41,103,138],"candidates":[42],"is":[43,50,141],"very":[44],"costly.":[45],"Therefore,":[46],"our":[47],"primary":[48],"interest":[49],"computationally":[52],"mine":[53],"candidate":[54],"from":[57,81],"a":[58,66,72],"pool":[59],"uncharacterized":[61],"We":[63],"introduce":[64],"fRNAdb:":[65],"database":[68],"service":[69],"hosts":[71],"large":[73],"collection":[74],"including":[78],"annotated/non-annotated":[79],"sequences":[80],"H-inv":[83],"database,":[84],"NONCODE":[85],"RNAdb.":[87],"A":[88],"set":[89],"computational":[91],"analyses":[92,101],"been":[94],"performed":[95],"on":[96],"included":[98],"sequences.":[99],"These":[100],"include":[102],"secondary":[104],"structure":[105],"motif":[106],"discovery,":[107],"EST":[108],"support":[109],"evaluation,":[110],"cis-regulatory":[111],"element":[112],"search,":[113,116],"homology":[115],"etc.":[117],"fRNAdb":[118,140],"provides":[119],"an":[120],"efficient":[121],"interface":[122],"help":[124],"users":[125],"filter":[126],"out":[127,136],"under":[130],"their":[131],"own":[132],"criteria":[133],"sort":[135],"candidates.":[139],"available":[142],"at":[143],"http://www.ncrna.org/":[144]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":6},{"year":2021,"cited_by_count":7},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":7},{"year":2018,"cited_by_count":7},{"year":2017,"cited_by_count":14},{"year":2016,"cited_by_count":8},{"year":2015,"cited_by_count":16},{"year":2014,"cited_by_count":17},{"year":2013,"cited_by_count":14},{"year":2012,"cited_by_count":10}],"updated_date":"2026-05-22T09:01:20.584952","created_date":"2025-10-10T00:00:00"}
