{"id":"https://openalex.org/W209659943","doi":"https://doi.org/10.1093/nar/gkl822","title":"VISTA Enhancer Browser--a database of tissue-specific human enhancers","display_name":"VISTA Enhancer Browser--a database of tissue-specific human enhancers","publication_year":2006,"publication_date":"2006-11-28","ids":{"openalex":"https://openalex.org/W209659943","doi":"https://doi.org/10.1093/nar/gkl822","mag":"209659943","pmid":"https://pubmed.ncbi.nlm.nih.gov/17130149"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkl822","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkl822","pdf_url":"https://academic.oup.com/nar/article-pdf/35/suppl_1/D88/3831457/gkl822.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/35/suppl_1/D88/3831457/gkl822.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5002417563","display_name":"Axel Visel","orcid":"https://orcid.org/0000-0002-4130-7784"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"A. Visel","raw_affiliation_strings":["Genomics Division, MS 84-171, Lawrence Berkeley National Laboratory, Berkeley, CA 94720 USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Genomics Division, MS 84-171, Lawrence Berkeley National Laboratory, Berkeley, CA 94720 USA","institution_ids":["https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048467633","display_name":"Simon Minovitsky","orcid":null},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"S. Minovitsky","raw_affiliation_strings":["Genomics Division, MS 84-171, Lawrence Berkeley National Laboratory, Berkeley, CA 94720 USA and","1Genomics Division, MS 84-171, Lawrence Berkeley National LaboratoryBerkeley, CA 94720 USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Genomics Division, MS 84-171, Lawrence Berkeley National Laboratory, Berkeley, CA 94720 USA and","institution_ids":["https://openalex.org/I148283060"]},{"raw_affiliation_string":"1Genomics Division, MS 84-171, Lawrence Berkeley National LaboratoryBerkeley, CA 94720 USA","institution_ids":["https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5107834893","display_name":"Inna Dubchak","orcid":null},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"I. Dubchak","raw_affiliation_strings":["Genomics Division, MS 84-171, Lawrence Berkeley National Laboratory, Berkeley, CA 94720 USA and","U.S. Department of Energy Joint Genome Institute, Walnut Creek, CA 94598 USA","1Genomics Division, MS 84-171, Lawrence Berkeley National LaboratoryBerkeley, CA 94720 USA","2U.S. Department of Energy Joint Genome Institute, Walnut CreekCA 94598 USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Genomics Division, MS 84-171, Lawrence Berkeley National Laboratory, Berkeley, CA 94720 USA and","institution_ids":["https://openalex.org/I148283060"]},{"raw_affiliation_string":"U.S. Department of Energy Joint Genome Institute, Walnut Creek, CA 94598 USA","institution_ids":["https://openalex.org/I196679689"]},{"raw_affiliation_string":"1Genomics Division, MS 84-171, Lawrence Berkeley National LaboratoryBerkeley, CA 94720 USA","institution_ids":["https://openalex.org/I148283060"]},{"raw_affiliation_string":"2U.S. Department of Energy Joint Genome Institute, Walnut CreekCA 94598 USA","institution_ids":["https://openalex.org/I196679689"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5031716064","display_name":"L Pennacchio","orcid":"https://orcid.org/0000-0002-8748-3732"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"L. A. Pennacchio","raw_affiliation_strings":["Genomics Division, MS 84-171, Lawrence Berkeley National Laboratory, Berkeley, CA 94720 USA and","U.S. Department of Energy Joint Genome Institute, Walnut Creek, CA 94598 USA","1Genomics Division, MS 84-171, Lawrence Berkeley National LaboratoryBerkeley, CA 94720 USA","2U.S. Department of Energy Joint Genome Institute, Walnut CreekCA 94598 USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Genomics Division, MS 84-171, Lawrence Berkeley National Laboratory, Berkeley, CA 94720 USA and","institution_ids":["https://openalex.org/I148283060"]},{"raw_affiliation_string":"U.S. Department of Energy Joint Genome Institute, Walnut Creek, CA 94598 USA","institution_ids":["https://openalex.org/I196679689"]},{"raw_affiliation_string":"1Genomics Division, MS 84-171, Lawrence Berkeley National LaboratoryBerkeley, CA 94720 USA","institution_ids":["https://openalex.org/I148283060"]},{"raw_affiliation_string":"2U.S. Department of Energy Joint Genome Institute, Walnut CreekCA 94598 USA","institution_ids":["https://openalex.org/I196679689"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":0.0,"has_fulltext":true,"cited_by_count":6,"citation_normalized_percentile":{"value":0.01564086,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"35","issue":"Database","first_page":"D88","last_page":"D92"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/enhancer","display_name":"Enhancer","score":0.9558343887329102},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.6229556202888489},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6182093024253845},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5987223982810974},{"id":"https://openalex.org/keywords/genome-browser","display_name":"Genome browser","score":0.5903226137161255},{"id":"https://openalex.org/keywords/enhancer-rnas","display_name":"Enhancer RNAs","score":0.575927197933197},{"id":"https://openalex.org/keywords/reporter-gene","display_name":"Reporter gene","score":0.5393095016479492},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.507672905921936},{"id":"https://openalex.org/keywords/transgene","display_name":"Transgene","score":0.4864165782928467},{"id":"https://openalex.org/keywords/human-genome","display_name":"Human genome","score":0.4494832456111908},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.38508105278015137},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.2974308729171753},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.1913478970527649}],"concepts":[{"id":"https://openalex.org/C111936080","wikidata":"https://www.wikidata.org/wiki/Q913367","display_name":"Enhancer","level":4,"score":0.9558343887329102},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.6229556202888489},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6182093024253845},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5987223982810974},{"id":"https://openalex.org/C2781148417","wikidata":"https://www.wikidata.org/wiki/Q5533486","display_name":"Genome browser","level":5,"score":0.5903226137161255},{"id":"https://openalex.org/C21784809","wikidata":"https://www.wikidata.org/wiki/Q17119097","display_name":"Enhancer RNAs","level":5,"score":0.575927197933197},{"id":"https://openalex.org/C161733203","wikidata":"https://www.wikidata.org/wiki/Q911828","display_name":"Reporter gene","level":4,"score":0.5393095016479492},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.507672905921936},{"id":"https://openalex.org/C102230213","wikidata":"https://www.wikidata.org/wiki/Q430117","display_name":"Transgene","level":3,"score":0.4864165782928467},{"id":"https://openalex.org/C197077220","wikidata":"https://www.wikidata.org/wiki/Q720988","display_name":"Human genome","level":4,"score":0.4494832456111908},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.38508105278015137},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.2974308729171753},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.1913478970527649}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004622","descriptor_name":"Embryo, Mammalian","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004622","descriptor_name":"Embryo, Mammalian","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004622","descriptor_name":"Embryo, Mammalian","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004742","descriptor_name":"Enhancer Elements, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004742","descriptor_name":"Enhancer Elements, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004742","descriptor_name":"Enhancer Elements, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":14,"locations":[{"id":"doi:10.1093/nar/gkl822","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkl822","pdf_url":"https://academic.oup.com/nar/article-pdf/35/suppl_1/D88/3831457/gkl822.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:17130149","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17130149","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:osti.gov:1625409","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/1625409","pdf_url":"https://www.osti.gov/servlets/purl/1625409","source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:info:ark/67531/metadc890009","is_oa":false,"landing_page_url":"https://digital.library.unt.edu/ark:/67531/metadc890009/","pdf_url":null,"source":{"id":"https://openalex.org/S4306400792","display_name":"University of North Texas Digital Library (University of North Texas)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I123534392","host_organization_name":"University of North Texas","host_organization_lineage":["https://openalex.org/I123534392"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Research; Journal Volume: 35; Journal Issue: SI; Related Information: Journal Publication Date: 01/2007","raw_type":"Article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.577.7132","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.577.7132","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/content/35/suppl_1/D88.full.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.580.9801","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.580.9801","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/content/early/2006/11/27/nar.gkl822.full-text-lowres.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.582.5795","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.582.5795","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/content/35/suppl_1/D88.full-text-lowres.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.631.6228","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.631.6228","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/content/early/2006/11/27/nar.gkl822.full.pdf","raw_type":"text"},{"id":"pmh:oai:escholarship.org/ark:/13030/qt1c36z8wt","is_oa":false,"landing_page_url":"https://escholarship.org/uc/item/1c36z8wt","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"article"},{"id":"pmh:oai:europepmc.org:2284825","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/1716724","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:osti.gov:918925","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/918925","pdf_url":null,"source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:1716724","is_oa":true,"landing_page_url":"http://doi.org/10.1093/nar/gkl822","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"},{"id":"pmh:qt1c36z8wt","is_oa":false,"landing_page_url":"http://www.escholarship.org/uc/item/1c36z8wt","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Visel, Axel; Minovitsky, Simon; Dubchak, Inna; &amp; Pennacchio, Len A.(2006). VISTA Enhancer Browser--A Database of Tissue-Specific Human Enhancers. Lawrence Berkeley National Laboratory. Lawrence Berkeley National Laboratory: Lawrence Berkeley National Laboratory. Retrieved from: http://www.escholarship.org/uc/item/1c36z8wt","raw_type":"article"},{"id":"mag:209659943","is_oa":false,"landing_page_url":"https://escholarship.org/uc/item/1c36z8wt?query=HTML+AND+Web","pdf_url":null,"source":{"id":"https://openalex.org/S2764971142","display_name":"Lawrence Berkeley National Laboratory","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4320800592","host_organization_name":"United States Department of Energy","host_organization_lineage":["https://openalex.org/P4320800592"],"host_organization_lineage_names":["United States Department of Energy"],"type":"journal"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":"Lawrence Berkeley National Laboratory","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/nar/gkl822","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkl822","pdf_url":"https://academic.oup.com/nar/article-pdf/35/suppl_1/D88/3831457/gkl822.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15","score":0.6299999952316284}],"awards":[{"id":"https://openalex.org/G1143651532","display_name":null,"funder_award_id":"DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320338292","funder_display_name":"Lawrence Berkeley National Laboratory"},{"id":"https://openalex.org/G1286236842","display_name":null,"funder_award_id":"-AC02-05CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G1497251703","display_name":null,"funder_award_id":"HG003988","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G2783151433","display_name":null,"funder_award_id":"U01 HL066681","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"},{"id":"https://openalex.org/G3083819904","display_name":null,"funder_award_id":"05CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G3818681050","display_name":null,"funder_award_id":"HL066681","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"},{"id":"https://openalex.org/G5057288783","display_name":null,"funder_award_id":"HG003988","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G5306717517","display_name":null,"funder_award_id":"Contract DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G5467908777","display_name":null,"funder_award_id":"R01 HG003988","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G6348972864","display_name":null,"funder_award_id":"AC02-05CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G6558272803","display_name":null,"funder_award_id":"DE-AC02","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G7354628648","display_name":null,"funder_award_id":"05CH11231","funder_id":"https://openalex.org/F4320338292","funder_display_name":"Lawrence Berkeley National Laboratory"},{"id":"https://openalex.org/G8306346728","display_name":null,"funder_award_id":"AC02-05CH11231","funder_id":"https://openalex.org/F4320338292","funder_display_name":"Lawrence Berkeley National Laboratory"},{"id":"https://openalex.org/G969889393","display_name":null,"funder_award_id":"DE-AC02-","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"}],"funders":[{"id":"https://openalex.org/F4320306084","display_name":"U.S. Department of Energy","ror":"https://ror.org/01bj3aw27"},{"id":"https://openalex.org/F4320306230","display_name":"American Heart Association","ror":"https://ror.org/013kjyp64"},{"id":"https://openalex.org/F4320337338","display_name":"National Heart, Lung, and Blood Institute","ror":"https://ror.org/012pb6c26"},{"id":"https://openalex.org/F4320337348","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391"},{"id":"https://openalex.org/F4320338292","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W209659943.pdf","grobid_xml":"https://content.openalex.org/works/W209659943.grobid-xml"},"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2766428648","https://openalex.org/W3111250235","https://openalex.org/W2619871835","https://openalex.org/W2140240158","https://openalex.org/W2546542913","https://openalex.org/W2911718354","https://openalex.org/W2521169638","https://openalex.org/W3046345618","https://openalex.org/W2976878457","https://openalex.org/W333689492","https://openalex.org/W2917910637","https://openalex.org/W2748113845","https://openalex.org/W1993551175","https://openalex.org/W3037778845","https://openalex.org/W1596151316","https://openalex.org/W3094378292","https://openalex.org/W3204573466","https://openalex.org/W2963266267","https://openalex.org/W2989782368","https://openalex.org/W2016757285"],"abstract_inverted_index":{"Despite":[0],"the":[1,9,41,64,69,95,143],"known":[2],"existence":[3],"of":[4,16,29,44,72,111,130,142,155,173,198,204],"distant-acting":[5],"cis-regulatory":[6],"elements":[7,18,62,151],"in":[8,25,63,74,78,88],"human":[10,65],"genome,":[11],"only":[12],"a":[13,166,176,192,195],"small":[14],"fraction":[15],"these":[17],"has":[19,35],"been":[20,117],"identified":[21],"and":[22,46,138,201],"experimentally":[23,107,184],"characterized":[24],"vivo.":[26],"This":[27,100],"paucity":[28],"enhancer":[30,61,76,205],"collections":[31,172],"with":[32,68,175],"defined":[33,177],"activities":[34],"thus":[36],"hindered":[37],"computational":[38,200],"approaches":[39],"for":[40,158,194],"genome-wide":[42],"prediction":[43],"enhancers":[45,159,174],"their":[47,73],"functions.":[48],"To":[49],"fill":[50],"this":[51],"void,":[52],"we":[53,126],"utilize":[54],"comparative":[55],"genome":[56,66],"analysis":[57],"to":[58,165,190],"identify":[59],"candidate":[60],"coupled":[67],"experimental":[70],"determination":[71],"vivo":[75],"activity":[77],"transgenic":[79],"mice":[80],"[L.":[81],"A.":[82],"Pennacchio":[83],"et":[84],"al.":[85],"(2006)":[86],"Nature,":[87],"press].":[89],"These":[90,183],"data":[91],"are":[92,188],"available":[93],"through":[94],"VISTA":[96],"Enhancer":[97],"Browser":[98],"(http://enhancer.lbl.gov).":[99],"growing":[101],"database":[102],"currently":[103],"contains":[104],"over":[105],"250":[106],"tested":[108],"DNA":[109],"fragments,":[110],"which":[112],"more":[113],"than":[114],"100":[115],"have":[116],"validated":[118,185],"as":[119],"tissue-specific":[120],"enhancers.":[121],"For":[122],"each":[123],"positive":[124],"enhancer,":[125],"provide":[127,191],"digital":[128],"images":[129],"whole-mount":[131],"embryo":[132],"staining":[133],"at":[134],"embryonic":[135],"day":[136],"11.5":[137],"an":[139],"anatomical":[140],"description":[141],"reporter":[144,162],"gene":[145,163],"expression":[146,164],"pattern.":[147],"Users":[148],"can":[149],"retrieve":[150],"near":[152],"single":[153],"genes":[154],"interest,":[156],"search":[157],"that":[160],"target":[161],"particular":[167],"tissue,":[168],"or":[169,180],"download":[170],"entire":[171],"tissue":[178],"specificity":[179],"conservation":[181],"depth.":[182],"training":[186],"sets":[187],"expected":[189],"basis":[193],"wide":[196],"range":[197],"downstream":[199],"functional":[202],"studies":[203],"function.":[206]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2018,"cited_by_count":1}],"updated_date":"2026-07-28T07:46:37.118299","created_date":"2025-10-10T00:00:00"}
