{"id":"https://openalex.org/W1991882465","doi":"https://doi.org/10.1093/nar/gkl785","title":"The TIGR Plant Transcript Assemblies database","display_name":"The TIGR Plant Transcript Assemblies database","publication_year":2006,"publication_date":"2006-11-06","ids":{"openalex":"https://openalex.org/W1991882465","doi":"https://doi.org/10.1093/nar/gkl785","mag":"1991882465","pmid":"https://pubmed.ncbi.nlm.nih.gov/17088284"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkl785","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkl785","pdf_url":"https://academic.oup.com/nar/article-pdf/35/suppl_1/D846/3817384/gkl785.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/35/suppl_1/D846/3817384/gkl785.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5050899822","display_name":"Kevin L. Childs","orcid":"https://orcid.org/0000-0002-3680-062X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"K. L. Childs","raw_affiliation_strings":["The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA","The Institute for Genomic Research9712 Medical Center Drive, Rockville, MD 20850, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA","institution_ids":[]},{"raw_affiliation_string":"The Institute for Genomic Research9712 Medical Center Drive, Rockville, MD 20850, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067372278","display_name":"John P. Hamilton","orcid":"https://orcid.org/0000-0002-8682-5526"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"J. P. Hamilton","raw_affiliation_strings":["The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA","The Institute for Genomic Research9712 Medical Center Drive, Rockville, MD 20850, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA","institution_ids":[]},{"raw_affiliation_string":"The Institute for Genomic Research9712 Medical Center Drive, Rockville, MD 20850, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102050508","display_name":"W. Zhu","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"W. Zhu","raw_affiliation_strings":["The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA","The Institute for Genomic Research9712 Medical Center Drive, Rockville, MD 20850, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA","institution_ids":[]},{"raw_affiliation_string":"The Institute for Genomic Research9712 Medical Center Drive, Rockville, MD 20850, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058621709","display_name":"Elodie Ly","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"E. Ly","raw_affiliation_strings":["The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA","The Institute for Genomic Research9712 Medical Center Drive, Rockville, MD 20850, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA","institution_ids":[]},{"raw_affiliation_string":"The Institute for Genomic Research9712 Medical Center Drive, Rockville, MD 20850, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021590991","display_name":"Foo Cheung","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"F. Cheung","raw_affiliation_strings":["The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA","The Institute for Genomic Research9712 Medical Center Drive, Rockville, MD 20850, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA","institution_ids":[]},{"raw_affiliation_string":"The Institute for Genomic Research9712 Medical Center Drive, Rockville, MD 20850, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031137221","display_name":"Hongsheng Wu","orcid":"https://orcid.org/0009-0002-0677-1992"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"H. Wu","raw_affiliation_strings":["The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA","The Institute for Genomic Research9712 Medical Center Drive, Rockville, MD 20850, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA","institution_ids":[]},{"raw_affiliation_string":"The Institute for Genomic Research9712 Medical Center Drive, Rockville, MD 20850, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011547244","display_name":"Pablo D. Rabinowicz","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"P. D. Rabinowicz","raw_affiliation_strings":["The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA","The Institute for Genomic Research9712 Medical Center Drive, Rockville, MD 20850, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA","institution_ids":[]},{"raw_affiliation_string":"The Institute for Genomic Research9712 Medical Center Drive, Rockville, MD 20850, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108517259","display_name":"Chris Town","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"C. D. Town","raw_affiliation_strings":["The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA","The Institute for Genomic Research9712 Medical Center Drive, Rockville, MD 20850, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA","institution_ids":[]},{"raw_affiliation_string":"The Institute for Genomic Research9712 Medical Center Drive, Rockville, MD 20850, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045742761","display_name":"C. Robin Buell","orcid":"https://orcid.org/0000-0002-6727-4677"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"C. R. Buell","raw_affiliation_strings":["The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA","The Institute for Genomic Research9712 Medical Center Drive, Rockville, MD 20850, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA","institution_ids":[]},{"raw_affiliation_string":"The Institute for Genomic Research9712 Medical Center Drive, Rockville, MD 20850, USA","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5005001979","display_name":"Agnes P. Chan","orcid":"https://orcid.org/0000-0003-2373-9580"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"A. P. Chan","raw_affiliation_strings":["The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA","The Institute for Genomic Research9712 Medical Center Drive, Rockville, MD 20850, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA","institution_ids":[]},{"raw_affiliation_string":"The Institute for Genomic Research9712 Medical Center Drive, Rockville, MD 20850, USA","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":10,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":9.2733,"has_fulltext":true,"cited_by_count":193,"citation_normalized_percentile":{"value":0.98703681,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"35","issue":"Database","first_page":"D846","last_page":"D851"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9812999963760376,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.9785000085830688,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/uniprot","display_name":"UniProt","score":0.8426985144615173},{"id":"https://openalex.org/keywords/genbank","display_name":"GenBank","score":0.8178806304931641},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7770247459411621},{"id":"https://openalex.org/keywords/expressed-sequence-tag","display_name":"Expressed sequence tag","score":0.7214592695236206},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.6783989071846008},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.6515129208564758},{"id":"https://openalex.org/keywords/sequence-database","display_name":"Sequence database","score":0.602540135383606},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.4496765434741974},{"id":"https://openalex.org/keywords/complementary-dna","display_name":"Complementary DNA","score":0.42699137330055237},{"id":"https://openalex.org/keywords/consensus-sequence","display_name":"Consensus sequence","score":0.4116547107696533},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3850525915622711},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.382101833820343},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.2973490059375763},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.20155757665634155},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.1738344132900238}],"concepts":[{"id":"https://openalex.org/C202264299","wikidata":"https://www.wikidata.org/wiki/Q905695","display_name":"UniProt","level":3,"score":0.8426985144615173},{"id":"https://openalex.org/C79029880","wikidata":"https://www.wikidata.org/wiki/Q901755","display_name":"GenBank","level":3,"score":0.8178806304931641},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7770247459411621},{"id":"https://openalex.org/C149034497","wikidata":"https://www.wikidata.org/wiki/Q1384835","display_name":"Expressed sequence tag","level":4,"score":0.7214592695236206},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.6783989071846008},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.6515129208564758},{"id":"https://openalex.org/C41584329","wikidata":"https://www.wikidata.org/wiki/Q175902","display_name":"Sequence database","level":3,"score":0.602540135383606},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.4496765434741974},{"id":"https://openalex.org/C187882448","wikidata":"https://www.wikidata.org/wiki/Q283478","display_name":"Complementary DNA","level":3,"score":0.42699137330055237},{"id":"https://openalex.org/C54985914","wikidata":"https://www.wikidata.org/wiki/Q1295754","display_name":"Consensus sequence","level":4,"score":0.4116547107696533},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3850525915622711},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.382101833820343},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2973490059375763},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.20155757665634155},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.1738344132900238}],"mesh":[{"descriptor_ui":"D010940","descriptor_name":"Plant Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010940","descriptor_name":"Plant Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010940","descriptor_name":"Plant Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018076","descriptor_name":"DNA, Complementary","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D018076","descriptor_name":"DNA, Complementary","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D018076","descriptor_name":"DNA, Complementary","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D018749","descriptor_name":"RNA, Plant","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D018749","descriptor_name":"RNA, Plant","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D018749","descriptor_name":"RNA, Plant","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D020224","descriptor_name":"Expressed Sequence Tags","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D020224","descriptor_name":"Expressed Sequence Tags","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D020224","descriptor_name":"Expressed Sequence Tags","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1093/nar/gkl785","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkl785","pdf_url":"https://academic.oup.com/nar/article-pdf/35/suppl_1/D846/3817384/gkl785.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:17088284","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17088284","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.823.8124","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.823.8124","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/content/35/suppl_1/D846.full.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.828.363","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.828.363","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/content/early/2006/11/06/nar.gkl785.full.pdf","raw_type":"text"},{"id":"pmh:oai:europepmc.org:2284735","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/1669722","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:1669722","is_oa":true,"landing_page_url":"http://doi.org/10.1093/nar/gkl785","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkl785","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkl785","pdf_url":"https://academic.oup.com/nar/article-pdf/35/suppl_1/D846/3817384/gkl785.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.6100000143051147,"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land"}],"awards":[{"id":"https://openalex.org/G183473428","display_name":null,"funder_award_id":"DBI-0218166","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G219356444","display_name":"Sequencing the Gene Space of the Model Legume, Medicago Truncatula","funder_award_id":"0321460","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G3114479746","display_name":"An Annotation Resource for the Rice Genome","funder_award_id":"0321538","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G4715623426","display_name":"Microarray Resources for Maize Research","funder_award_id":"0321663","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G729396699","display_name":"Potato Functional Genomics: Aplication to Analysis of Growth, Development, Metabolism and Responses to Biotic and Abiotic Stress","funder_award_id":"0218166","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320306114","display_name":"U.S. Department of Agriculture","ror":"https://ror.org/01na82s61"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1991882465.pdf","grobid_xml":"https://content.openalex.org/works/W1991882465.grobid-xml"},"referenced_works_count":18,"referenced_works":["https://openalex.org/W172603576","https://openalex.org/W1870496269","https://openalex.org/W2055043387","https://openalex.org/W2055666215","https://openalex.org/W2101875329","https://openalex.org/W2101972919","https://openalex.org/W2114049512","https://openalex.org/W2136145671","https://openalex.org/W2144975794","https://openalex.org/W2161062388","https://openalex.org/W2164395223","https://openalex.org/W2166265186","https://openalex.org/W2171154676","https://openalex.org/W4211083314","https://openalex.org/W4231824804","https://openalex.org/W4236236547","https://openalex.org/W4285719527","https://openalex.org/W4293196852"],"related_works":["https://openalex.org/W2557595285","https://openalex.org/W3136663431","https://openalex.org/W2022667872","https://openalex.org/W2914405292","https://openalex.org/W2161062388","https://openalex.org/W2161189461","https://openalex.org/W2926533301","https://openalex.org/W2018564950","https://openalex.org/W2035120013","https://openalex.org/W1484074690"],"abstract_inverted_index":{"The":[0,24,43,62,88,102,122,142,169],"TIGR":[1],"Plant":[2],"Transcript":[3],"Assemblies":[4,155],"(TA)":[5],"database":[6,17,45,108,114,175],"(http://plantta.tigr.org)":[7],"uses":[8],"expressed":[9,28],"sequences":[10,25,58,66,83,144],"collected":[11,26],"from":[12,85],"the":[13,19,79,94,99,112,116,120,132,135,138,173],"NCBI":[14],"GenBank":[15],"Nucleotide":[16],"for":[18,50,115],"construction":[20],"of":[21,81,119,125,134,172,186],"transcript":[22],"assemblies.":[23,121],"include":[27],"sequence":[29,75],"tags":[30],"(ESTs)":[31],"and":[32,34,64,90,98,145,152,182],"full-length":[33],"partial":[35],"cDNAs,":[36],"but":[37],"exclude":[38],"computationally":[39],"predicted":[40],"gene":[41],"sequences.":[42],"TA":[44,127,143,174],"includes":[46,183],"all":[47],"plant":[48,188],"species":[49],"which":[51],"more":[52],"than":[53],"1000":[54],"EST":[55,63],"or":[56,164],"cDNA":[57,65],"are":[59,67,147],"publicly":[60],"available.":[61],"first":[68],"clustered":[69],"based":[70,130],"on":[71,131],"an":[72],"all-versus-all":[73],"pairwise":[74],"comparison,":[76],"followed":[77],"by":[78,159],"generation":[80],"consensus":[82],"(TAs)":[84],"individual":[86],"clusters.":[87],"clustering":[89],"assembly":[91],"procedures":[92],"use":[93],"TGICL":[95],"tool,":[96],"Megablast":[97],"CAP3":[100],"assembler.":[101],"UniProt":[103],"Reference":[104],"Clusters":[105],"(UniRef100)":[106],"protein":[107,140],"is":[109,128,176],"used":[110],"as":[111],"reference":[113],"functional":[117],"annotation":[118,146],"transcription":[123],"orientation":[124,133],"each":[126],"determined":[129],"alignment":[136],"with":[137],"best":[139],"hit.":[141],"available":[148],"via":[149],"web":[150],"interfaces":[151],"FTP":[153],"downloads.":[154],"can":[156],"be":[157],"retrieved":[158],"a":[160,165,184],"text-based":[161],"keyword":[162],"search":[163],"sequence-based":[166],"BLAST":[167],"search.":[168],"current":[170],"version":[171],"Release":[177],"2":[178],"(July":[179],"17,":[180],"2006)":[181],"total":[185],"215":[187],"species.":[189]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2021,"cited_by_count":14},{"year":2020,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":11},{"year":2015,"cited_by_count":7},{"year":2014,"cited_by_count":9},{"year":2013,"cited_by_count":15},{"year":2012,"cited_by_count":18}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
