{"id":"https://openalex.org/W2102028742","doi":"https://doi.org/10.1093/nar/gkl780","title":"RetrOryza: a database of the rice LTR-retrotransposons","display_name":"RetrOryza: a database of the rice LTR-retrotransposons","publication_year":2006,"publication_date":"2006-10-28","ids":{"openalex":"https://openalex.org/W2102028742","doi":"https://doi.org/10.1093/nar/gkl780","mag":"2102028742","pmid":"https://pubmed.ncbi.nlm.nih.gov/17071960"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkl780","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkl780","pdf_url":"https://academic.oup.com/nar/article-pdf/35/suppl_1/D66/3813226/gkl780.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/35/suppl_1/D66/3813226/gkl780.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5016451177","display_name":"Cristian Chaparro","orcid":"https://orcid.org/0000-0002-5162-349X"},"institutions":[{"id":"https://openalex.org/I4210130438","display_name":"Laboratoire G\u00e9nome et D\u00e9veloppement des Plantes","ror":"https://ror.org/038207k30","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I151295451","https://openalex.org/I4210096427","https://openalex.org/I4210130438"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"C. Chaparro","raw_affiliation_strings":["Laboratoire G\u00e9nome et D\u00e9veloppement des Plantes, UMR 5096 CNRS-IRD-Universit\u00e9 de Perpignan, 52 Avenue Paul Alduy, 66860 Perpignan, France","Laboratoire G\u00e9nome et d\u00e9veloppement des plantes"],"affiliations":[{"raw_affiliation_string":"Laboratoire G\u00e9nome et D\u00e9veloppement des Plantes, UMR 5096 CNRS-IRD-Universit\u00e9 de Perpignan, 52 Avenue Paul Alduy, 66860 Perpignan, France","institution_ids":[]},{"raw_affiliation_string":"Laboratoire G\u00e9nome et d\u00e9veloppement des plantes","institution_ids":["https://openalex.org/I4210130438"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023573743","display_name":"Romain Guyot","orcid":"https://orcid.org/0000-0002-7016-7485"},"institutions":[{"id":"https://openalex.org/I4210130438","display_name":"Laboratoire G\u00e9nome et D\u00e9veloppement des Plantes","ror":"https://ror.org/038207k30","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I151295451","https://openalex.org/I4210096427","https://openalex.org/I4210130438"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"R. Guyot","raw_affiliation_strings":["Laboratoire G\u00e9nome et d\u00e9veloppement des plantes"],"affiliations":[{"raw_affiliation_string":"Laboratoire G\u00e9nome et d\u00e9veloppement des plantes","institution_ids":["https://openalex.org/I4210130438"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032756420","display_name":"Andrea Zuccolo","orcid":"https://orcid.org/0000-0001-7574-0714"},"institutions":[{"id":"https://openalex.org/I138006243","display_name":"University of Arizona","ror":"https://ror.org/03m2x1q45","country_code":"US","type":"education","lineage":["https://openalex.org/I138006243"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"A. Zuccolo","raw_affiliation_strings":["1Department of Plant Sciences, Arizona Genomics Institute, University of ArizonaTucson, AZ 85721, USA"],"affiliations":[{"raw_affiliation_string":"1Department of Plant Sciences, Arizona Genomics Institute, University of ArizonaTucson, AZ 85721, USA","institution_ids":["https://openalex.org/I138006243"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059236519","display_name":"Beno\u00eet Pi\u00e9gu","orcid":"https://orcid.org/0000-0003-4384-1726"},"institutions":[{"id":"https://openalex.org/I4210130438","display_name":"Laboratoire G\u00e9nome et D\u00e9veloppement des Plantes","ror":"https://ror.org/038207k30","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I151295451","https://openalex.org/I4210096427","https://openalex.org/I4210130438"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"B. Piegu","raw_affiliation_strings":["Laboratoire G\u00e9nome et d\u00e9veloppement des plantes"],"affiliations":[{"raw_affiliation_string":"Laboratoire G\u00e9nome et d\u00e9veloppement des plantes","institution_ids":["https://openalex.org/I4210130438"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5025702012","display_name":"Olivier Panaud","orcid":"https://orcid.org/0000-0002-9292-503X"},"institutions":[{"id":"https://openalex.org/I4210130438","display_name":"Laboratoire G\u00e9nome et D\u00e9veloppement des Plantes","ror":"https://ror.org/038207k30","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I151295451","https://openalex.org/I4210096427","https://openalex.org/I4210130438"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"O. Panaud","raw_affiliation_strings":["Laboratoire G\u00e9nome et d\u00e9veloppement des plantes"],"affiliations":[{"raw_affiliation_string":"Laboratoire G\u00e9nome et d\u00e9veloppement des plantes","institution_ids":["https://openalex.org/I4210130438"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5016451177"],"corresponding_institution_ids":["https://openalex.org/I4210130438"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":6.2344,"has_fulltext":true,"cited_by_count":56,"citation_normalized_percentile":{"value":0.96008178,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"35","issue":"Database","first_page":"D66","last_page":"D70"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12858","display_name":"Plant Disease Resistance and Genetics","score":0.9945999979972839,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/retrotransposon","display_name":"Retrotransposon","score":0.9726022481918335},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7508898973464966},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.6952854990959167},{"id":"https://openalex.org/keywords/long-terminal-repeat","display_name":"Long terminal repeat","score":0.680770218372345},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.574446976184845},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.48064935207366943},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.4495583176612854},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.4269097149372101},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4048948287963867},{"id":"https://openalex.org/keywords/transposable-element","display_name":"Transposable element","score":0.23927748203277588},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.18605810403823853}],"concepts":[{"id":"https://openalex.org/C7029365","wikidata":"https://www.wikidata.org/wiki/Q413988","display_name":"Retrotransposon","level":5,"score":0.9726022481918335},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7508898973464966},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.6952854990959167},{"id":"https://openalex.org/C199491388","wikidata":"https://www.wikidata.org/wiki/Q1869477","display_name":"Long terminal repeat","level":4,"score":0.680770218372345},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.574446976184845},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.48064935207366943},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.4495583176612854},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.4269097149372101},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4048948287963867},{"id":"https://openalex.org/C4918238","wikidata":"https://www.wikidata.org/wiki/Q121438","display_name":"Transposable element","level":4,"score":0.23927748203277588},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.18605810403823853},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C58226133","wikidata":"https://www.wikidata.org/wiki/Q1324199","display_name":"Pulmonary surfactant","level":2,"score":0.0},{"id":"https://openalex.org/C55352822","wikidata":"https://www.wikidata.org/wiki/Q5558978","display_name":"Gibbs isotherm","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D012275","descriptor_name":"Oryza","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012275","descriptor_name":"Oryza","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012275","descriptor_name":"Oryza","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018626","descriptor_name":"Retroelements","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018626","descriptor_name":"Retroelements","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018626","descriptor_name":"Retroelements","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020079","descriptor_name":"Terminal Repeat Sequences","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020079","descriptor_name":"Terminal Repeat Sequences","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020079","descriptor_name":"Terminal Repeat Sequences","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":8,"locations":[{"id":"doi:10.1093/nar/gkl780","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkl780","pdf_url":"https://academic.oup.com/nar/article-pdf/35/suppl_1/D66/3813226/gkl780.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:17071960","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17071960","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.581.6868","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.581.6868","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/content/early/2006/10/28/nar.gkl780.full-text-lowres.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.623.1096","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.623.1096","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/content/35/suppl_1/D66.full-text-lowres.pdf","raw_type":"text"},{"id":"pmh:oai:HAL:hal-00164403v1","is_oa":false,"landing_page_url":"https://hal.science/hal-00164403","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Research, 2007, 35 (Database issue), pp.D66-70. &#x27E8;10.1093/nar/gkl780&#x27E9;","raw_type":"Journal articles"},{"id":"pmh:oai:europepmc.org:2284714","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/1635335","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:1635335","is_oa":true,"landing_page_url":"http://doi.org/10.1093/nar/gkl780","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"},{"id":"pmh:oai:www.iris.sssup.it:11382/337774","is_oa":false,"landing_page_url":"http://hdl.handle.net/11382/337774","pdf_url":null,"source":{"id":"https://openalex.org/S4377196376","display_name":"CINECA IRIS Institutional Research Information System (Sant'Anna School of Advanced Studies)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I162290304","host_organization_name":"Scuola Superiore Sant'Anna","host_organization_lineage":["https://openalex.org/I162290304"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/nar/gkl780","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkl780","pdf_url":"https://academic.oup.com/nar/article-pdf/35/suppl_1/D66/3813226/gkl780.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G766923599","display_name":null,"funder_award_id":"ANR-05","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G7758152977","display_name":null,"funder_award_id":"support","funder_id":"https://openalex.org/F4320322892","funder_display_name":"Centre National de la Recherche Scientifique"}],"funders":[{"id":"https://openalex.org/F4320320883","display_name":"Agence Nationale de la Recherche","ror":"https://ror.org/00rbzpz17"},{"id":"https://openalex.org/F4320322892","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2102028742.pdf","grobid_xml":"https://content.openalex.org/works/W2102028742.grobid-xml"},"referenced_works_count":25,"referenced_works":["https://openalex.org/W36931611","https://openalex.org/W1964550721","https://openalex.org/W1996423252","https://openalex.org/W2025648577","https://openalex.org/W2045386895","https://openalex.org/W2061676846","https://openalex.org/W2066936243","https://openalex.org/W2071501400","https://openalex.org/W2081699088","https://openalex.org/W2082912373","https://openalex.org/W2091993575","https://openalex.org/W2094923272","https://openalex.org/W2103148772","https://openalex.org/W2103623969","https://openalex.org/W2108904414","https://openalex.org/W2114179812","https://openalex.org/W2118556605","https://openalex.org/W2137986897","https://openalex.org/W2145477956","https://openalex.org/W2149429041","https://openalex.org/W2162216089","https://openalex.org/W2175948239","https://openalex.org/W2376415561","https://openalex.org/W4237832699","https://openalex.org/W4250052351"],"related_works":["https://openalex.org/W113856995","https://openalex.org/W3145616024","https://openalex.org/W2004644512","https://openalex.org/W2054036000","https://openalex.org/W2402665505","https://openalex.org/W2064967612","https://openalex.org/W2375807013","https://openalex.org/W2019364734","https://openalex.org/W2137282308","https://openalex.org/W2094923272"],"abstract_inverted_index":{"Long":[0],"terminal":[1],"repeat":[2],"(LTR)-retrotransposons":[3],"comprise":[4],"a":[5,71,114,154,164],"significant":[6],"portion":[7],"of":[8,35,41,64,74,163,166],"the":[9,19,33,38,45,59,65,95,99,106,125,141,150,161],"rice":[10,46],"genome.":[11],"Their":[12],"complete":[13,39,129],"characterization":[14],"is":[15,22,48],"thus":[16],"necessary":[17],"if":[18],"sequenced":[20],"genome":[21,47],"to":[23,52,68,92,108,140],"be":[24],"annotated":[25],"correctly.":[26],"In":[27],"addition,":[28],"because":[29],"LTR-retrotransposons":[30,75,118,130,159],"can":[31,152],"influence":[32],"expression":[34],"neighboring":[36],"genes,":[37],"identification":[40],"these":[42,110],"elements":[43],"in":[44,50,98,160],"essential":[49],"order":[51],"study":[53],"their":[54],"putative":[55],"functional":[56],"interactions":[57],"with":[58],"plant":[60],"genes.":[61,121],"The":[62],"aims":[63],"database":[66,142],"are":[67],"(i)":[69],"Assemble":[70],"comprehensive":[72],"dataset":[73],"that":[76],"includes":[77],"not":[78],"only":[79],"abundant":[80],"elements,":[81],"but":[82],"also":[83,104],"low":[84],"copy":[85],"number":[86],"elements.":[87,111],"(ii)":[88],"Provide":[89,113],"an":[90],"interface":[91,102,139],"efficiently":[93],"access":[94],"resources":[96],"stored":[97],"database.":[100],"This":[101],"should":[103],"allow":[105],"community":[107],"annotate":[109,153],"(iii)":[112],"means":[115],"for":[116,158],"identifying":[117],"inserted":[119],"near":[120],"Here":[122],"we":[123],"present":[124],"results,":[126],"where":[127],"242":[128],"have":[131],"been":[132,144],"structurally":[133],"and":[134],"functionally":[135],"annotated.":[136],"A":[137],"web":[138],"has":[143],"made":[145],"available":[146],"(http://www.retroryza.org/),":[147],"through":[148],"which":[149],"user":[151],"sequence":[155],"or":[156],"search":[157],"neighborhood":[162],"gene":[165],"interest.":[167]},"counts_by_year":[{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":5},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":3}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
