{"id":"https://openalex.org/W2113216557","doi":"https://doi.org/10.1093/nar/gkl351","title":"Localizome: a server for identifying transmembrane topologies and TM helices of eukaryotic proteins utilizing domain information","display_name":"Localizome: a server for identifying transmembrane topologies and TM helices of eukaryotic proteins utilizing domain information","publication_year":2006,"publication_date":"2006-07-01","ids":{"openalex":"https://openalex.org/W2113216557","doi":"https://doi.org/10.1093/nar/gkl351","mag":"2113216557","pmid":"https://pubmed.ncbi.nlm.nih.gov/16845118"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkl351","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkl351","pdf_url":"https://academic.oup.com/nar/article-pdf/34/suppl_2/W99/7623861/gkl351.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/34/suppl_2/W99/7623861/gkl351.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100741445","display_name":"Sunghoon Lee","orcid":"https://orcid.org/0000-0002-8916-2035"},"institutions":[{"id":"https://openalex.org/I73616290","display_name":"Korea Research Institute of Bioscience and Biotechnology","ror":"https://ror.org/03ep23f07","country_code":"KR","type":"facility","lineage":["https://openalex.org/I2801339556","https://openalex.org/I4210144908","https://openalex.org/I4387152098","https://openalex.org/I73616290"]}],"countries":["KR"],"is_corresponding":true,"raw_author_name":"S. Lee","raw_affiliation_strings":["National Genome Information Center, Korea Research Institute of Bioscience and Biotechnology, 52 Ueun-dong, Yuseong-gu, Daejeon 305-333, Republic of Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Genome Information Center, Korea Research Institute of Bioscience and Biotechnology, 52 Ueun-dong, Yuseong-gu, Daejeon 305-333, Republic of Korea","institution_ids":["https://openalex.org/I73616290"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100616741","display_name":"Bora Lee","orcid":"https://orcid.org/0000-0002-6322-5712"},"institutions":[{"id":"https://openalex.org/I73616290","display_name":"Korea Research Institute of Bioscience and Biotechnology","ror":"https://ror.org/03ep23f07","country_code":"KR","type":"facility","lineage":["https://openalex.org/I2801339556","https://openalex.org/I4210144908","https://openalex.org/I4387152098","https://openalex.org/I73616290"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"B. Lee","raw_affiliation_strings":["National Genome Information Center, Korea Research Institute of Bioscience and Biotechnology, 52 Ueun-dong, Yuseong-gu, Daejeon 305-333, Republic of Korea and"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Genome Information Center, Korea Research Institute of Bioscience and Biotechnology, 52 Ueun-dong, Yuseong-gu, Daejeon 305-333, Republic of Korea and","institution_ids":["https://openalex.org/I73616290"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036283039","display_name":"In Sock Jang","orcid":"https://orcid.org/0000-0002-7285-7885"},"institutions":[{"id":"https://openalex.org/I73616290","display_name":"Korea Research Institute of Bioscience and Biotechnology","ror":"https://ror.org/03ep23f07","country_code":"KR","type":"facility","lineage":["https://openalex.org/I2801339556","https://openalex.org/I4210144908","https://openalex.org/I4387152098","https://openalex.org/I73616290"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"I. Jang","raw_affiliation_strings":["National Genome Information Center, Korea Research Institute of Bioscience and Biotechnology, 52 Ueun-dong, Yuseong-gu, Daejeon 305-333, Republic of Korea and"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Genome Information Center, Korea Research Institute of Bioscience and Biotechnology, 52 Ueun-dong, Yuseong-gu, Daejeon 305-333, Republic of Korea and","institution_ids":["https://openalex.org/I73616290"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020320673","display_name":"Semi Kim","orcid":"https://orcid.org/0000-0001-8043-1465"},"institutions":[{"id":"https://openalex.org/I141371507","display_name":"Soongsil University","ror":"https://ror.org/017xnm587","country_code":"KR","type":"education","lineage":["https://openalex.org/I141371507"]},{"id":"https://openalex.org/I73616290","display_name":"Korea Research Institute of Bioscience and Biotechnology","ror":"https://ror.org/03ep23f07","country_code":"KR","type":"facility","lineage":["https://openalex.org/I2801339556","https://openalex.org/I4210144908","https://openalex.org/I4387152098","https://openalex.org/I73616290"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"S. Kim","raw_affiliation_strings":["Department of Bioinformatics, Soongsil University, 1-1 Sangdo-dong, Dongjak-gu, Seoul 156-743, Republic of Korea","National Genome Information Center, Korea Research Institute of Bioscience and Biotechnology, 52 Ueun-dong, Yuseong-gu, Daejeon 305-333, Republic of Korea and"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics, Soongsil University, 1-1 Sangdo-dong, Dongjak-gu, Seoul 156-743, Republic of Korea","institution_ids":["https://openalex.org/I141371507"]},{"raw_affiliation_string":"National Genome Information Center, Korea Research Institute of Bioscience and Biotechnology, 52 Ueun-dong, Yuseong-gu, Daejeon 305-333, Republic of Korea and","institution_ids":["https://openalex.org/I73616290"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5070693100","display_name":"Jong Bhak","orcid":"https://orcid.org/0000-0002-4228-1299"},"institutions":[{"id":"https://openalex.org/I73616290","display_name":"Korea Research Institute of Bioscience and Biotechnology","ror":"https://ror.org/03ep23f07","country_code":"KR","type":"facility","lineage":["https://openalex.org/I2801339556","https://openalex.org/I4210144908","https://openalex.org/I4387152098","https://openalex.org/I73616290"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"J. Bhak","raw_affiliation_strings":["National Genome Information Center, Korea Research Institute of Bioscience and Biotechnology, 52 Ueun-dong, Yuseong-gu, Daejeon 305-333, Republic of Korea and"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Genome Information Center, Korea Research Institute of Bioscience and Biotechnology, 52 Ueun-dong, Yuseong-gu, Daejeon 305-333, Republic of Korea and","institution_ids":["https://openalex.org/I73616290"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5100741445"],"corresponding_institution_ids":["https://openalex.org/I73616290"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":1.7559,"has_fulltext":true,"cited_by_count":32,"citation_normalized_percentile":{"value":0.83461986,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"34","issue":"Web Server","first_page":"W99","last_page":"W103"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/topology","display_name":"Topology (electrical circuits)","score":0.6269299387931824},{"id":"https://openalex.org/keywords/network-topology","display_name":"Network topology","score":0.6111279129981995},{"id":"https://openalex.org/keywords/transmembrane-domain","display_name":"Transmembrane domain","score":0.6019363403320312},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.5962334275245667},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.5627331733703613},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5134740471839905},{"id":"https://openalex.org/keywords/transmembrane-protein","display_name":"Transmembrane protein","score":0.5065609216690063},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5001840591430664},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.49764326214790344},{"id":"https://openalex.org/keywords/protein-domain","display_name":"Protein domain","score":0.4941771328449249},{"id":"https://openalex.org/keywords/helix","display_name":"Helix (gastropod)","score":0.49163132905960083},{"id":"https://openalex.org/keywords/membrane-protein","display_name":"Membrane protein","score":0.4317917227745056},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4250721335411072},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3673449754714966},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.16828155517578125},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.15623483061790466},{"id":"https://openalex.org/keywords/computer-network","display_name":"Computer network","score":0.15003708004951477},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.1313069462776184},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.11259782314300537},{"id":"https://openalex.org/keywords/membrane","display_name":"Membrane","score":0.09460669755935669}],"concepts":[{"id":"https://openalex.org/C184720557","wikidata":"https://www.wikidata.org/wiki/Q7825049","display_name":"Topology (electrical circuits)","level":2,"score":0.6269299387931824},{"id":"https://openalex.org/C199845137","wikidata":"https://www.wikidata.org/wiki/Q145490","display_name":"Network topology","level":2,"score":0.6111279129981995},{"id":"https://openalex.org/C118892022","wikidata":"https://www.wikidata.org/wiki/Q7834587","display_name":"Transmembrane domain","level":3,"score":0.6019363403320312},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.5962334275245667},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.5627331733703613},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5134740471839905},{"id":"https://openalex.org/C24530287","wikidata":"https://www.wikidata.org/wiki/Q424204","display_name":"Transmembrane protein","level":3,"score":0.5065609216690063},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5001840591430664},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.49764326214790344},{"id":"https://openalex.org/C144292202","wikidata":"https://www.wikidata.org/wiki/Q898273","display_name":"Protein domain","level":3,"score":0.4941771328449249},{"id":"https://openalex.org/C2778530040","wikidata":"https://www.wikidata.org/wiki/Q1937315","display_name":"Helix (gastropod)","level":3,"score":0.49163132905960083},{"id":"https://openalex.org/C144647389","wikidata":"https://www.wikidata.org/wiki/Q423042","display_name":"Membrane protein","level":3,"score":0.4317917227745056},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4250721335411072},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3673449754714966},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.16828155517578125},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.15623483061790466},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.15003708004951477},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.1313069462776184},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.11259782314300537},{"id":"https://openalex.org/C41625074","wikidata":"https://www.wikidata.org/wiki/Q176088","display_name":"Membrane","level":2,"score":0.09460669755935669},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C2779965526","wikidata":"https://www.wikidata.org/wiki/Q308841","display_name":"Snail","level":2,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C170493617","wikidata":"https://www.wikidata.org/wiki/Q208467","display_name":"Receptor","level":2,"score":0.0},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D002451","descriptor_name":"Cell Compartmentation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002451","descriptor_name":"Cell Compartmentation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002451","descriptor_name":"Cell Compartmentation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002451","descriptor_name":"Cell Compartmentation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002451","descriptor_name":"Cell Compartmentation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005057","descriptor_name":"Eukaryotic Cells","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D005057","descriptor_name":"Eukaryotic Cells","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D005057","descriptor_name":"Eukaryotic Cells","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D005057","descriptor_name":"Eukaryotic Cells","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D005057","descriptor_name":"Eukaryotic Cells","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D008565","descriptor_name":"Membrane Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D008565","descriptor_name":"Membrane Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D008565","descriptor_name":"Membrane Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D008565","descriptor_name":"Membrane Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D008565","descriptor_name":"Membrane Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/nar/gkl351","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkl351","pdf_url":"https://academic.oup.com/nar/article-pdf/34/suppl_2/W99/7623861/gkl351.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:16845118","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/16845118","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:europepmc.org:338422","is_oa":false,"landing_page_url":"http://europepmc.org/pmc/articles/PMC1538878","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:http://repository.kribb.re.kr:8080/:201005/7490","is_oa":false,"landing_page_url":"http://doi.org/10.1093/nar/gkl351","pdf_url":null,"source":{"id":"https://openalex.org/S4406922719","display_name":"KRIBB Repository","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"/dspace/upload/original/6519.pdf","raw_type":"Article"},{"id":"pmh:oai:scholarworks.unist.ac.kr:201301/13195","is_oa":true,"landing_page_url":"http://nar.oxfordjournals.org/content/34/suppl_2/W99","pdf_url":null,"source":{"id":"https://openalex.org/S4306401118","display_name":"Scholarworks@UNIST (Ulsan National Institute of Science and Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I48566637","host_organization_name":"Ulsan National Institute of Science and Technology","host_organization_lineage":["https://openalex.org/I48566637"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"ARTICLE"}],"best_oa_location":{"id":"doi:10.1093/nar/gkl351","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkl351","pdf_url":"https://academic.oup.com/nar/article-pdf/34/suppl_2/W99/7623861/gkl351.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320322110","display_name":"Korea Research Institute of Bioscience and Biotechnology","ror":"https://ror.org/03ep23f07"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2113216557.pdf","grobid_xml":"https://content.openalex.org/works/W2113216557.grobid-xml"},"referenced_works_count":28,"referenced_works":["https://openalex.org/W205578041","https://openalex.org/W1251243258","https://openalex.org/W1525523977","https://openalex.org/W1971147414","https://openalex.org/W1988284480","https://openalex.org/W2012481064","https://openalex.org/W2019187626","https://openalex.org/W2089606003","https://openalex.org/W2097870001","https://openalex.org/W2104431488","https://openalex.org/W2108211735","https://openalex.org/W2117919289","https://openalex.org/W2127230663","https://openalex.org/W2139042094","https://openalex.org/W2141885858","https://openalex.org/W2142529984","https://openalex.org/W2148853951","https://openalex.org/W2150383975","https://openalex.org/W2152770371","https://openalex.org/W2153180326","https://openalex.org/W2155520400","https://openalex.org/W2165460636","https://openalex.org/W2166187656","https://openalex.org/W2168909179","https://openalex.org/W2169805130","https://openalex.org/W2612812586","https://openalex.org/W3095583226","https://openalex.org/W4210400672"],"related_works":["https://openalex.org/W3099772455","https://openalex.org/W3172198228","https://openalex.org/W1986078734","https://openalex.org/W2100968031","https://openalex.org/W3141676181","https://openalex.org/W1974240269","https://openalex.org/W2062258289","https://openalex.org/W1992657771","https://openalex.org/W2040208869","https://openalex.org/W2036123216"],"abstract_inverted_index":{"The":[0,46,95,189],"Localizome":[1,96,168,190],"server":[2,97,119,169,191],"predicts":[3],"the":[4,19,31,43,53,99,103,109,121,131,164,167],"transmembrane":[5],"(TM)":[6],"helix":[7,76,161],"number":[8],"and":[9,17,36,50,74,92,133,137,149,159,174],"TM":[10,44,54,72,75,125,142,157,160],"topology":[11,55,126,158],"of":[12,33,78,102,156],"a":[13,37,59,67,153,171],"user-supplied":[14],"eukaryotic":[15],"protein":[16,60,80,143],"presents":[18],"result":[20],"as":[21,184,186],"an":[22],"intuitive":[23],"graphic":[24],"representation.":[25],"It":[26,82],"utilizes":[27],"hmmpfam":[28],"to":[29,41,106,108],"detect":[30],"presence":[32],"Pfam":[34,86],"domains":[35,87],"prediction":[38],"algorithm,":[39],"Phobius,":[40],"predict":[42],"helices.":[45],"results":[47,101],"are":[48],"combined":[49,88,100],"checked":[51],"against":[52],"rules":[56,110],"stored":[57,111],"in":[58,112],"domain":[61,144,165],"database":[62,69],"called":[63],"LocaloDom.":[64,113],"LocaloDom":[65],"is":[66,170],"curated":[68],"that":[70],"contains":[71],"topologies":[73],"numbers":[77],"known":[79],"domains.":[81],"was":[83],"constructed":[84],"from":[85],"with":[89,115,163],"Swiss-Prot":[90],"annotations":[91],"Phobius":[93],"predictions.":[94],"corrects":[98],"user":[104],"sequence":[105],"conform":[107],"Compared":[114],"other":[116],"programs,":[117],"this":[118],"showed":[120],"highest":[122],"accuracy":[123,132],"for":[124,128,141,178,181],"prediction:":[127],"soluble":[129,182],"proteins,":[130],"coverage":[134],"were":[135,147],"99":[136],"75%,":[138],"respectively,":[139],"while":[140],"regions,":[145],"they":[146],"96":[148],"68%,":[150],"respectively.":[151],"With":[152],"graphical":[154],"representation":[155],"positions":[162],"units,":[166],"highly":[172],"accurate":[173],"comprehensive":[175],"information":[176],"source":[177],"subcellular":[179],"localization":[180],"proteins":[183],"well":[185],"membrane":[187],"proteins.":[188],"can":[192],"be":[193],"found":[194],"at":[195],"http://localizome.org/.":[196]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":1}],"updated_date":"2026-06-16T07:32:37.131356","created_date":"2025-10-10T00:00:00"}