{"id":"https://openalex.org/W2089639709","doi":"https://doi.org/10.1093/nar/gkl344","title":"Protemot: prediction of protein binding sites with automatically extracted geometrical templates","display_name":"Protemot: prediction of protein binding sites with automatically extracted geometrical templates","publication_year":2006,"publication_date":"2006-07-01","ids":{"openalex":"https://openalex.org/W2089639709","doi":"https://doi.org/10.1093/nar/gkl344","mag":"2089639709","pmid":"https://pubmed.ncbi.nlm.nih.gov/16845015"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkl344","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkl344","pdf_url":"https://academic.oup.com/nar/article-pdf/34/suppl_2/W303/7623846/gkl344.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/34/suppl_2/W303/7623846/gkl344.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5030417045","display_name":"Darby Tien-Hao Chang","orcid":"https://orcid.org/0000-0002-5056-8679"},"institutions":[{"id":"https://openalex.org/I16733864","display_name":"National Taiwan University","ror":"https://ror.org/05bqach95","country_code":"TW","type":"education","lineage":["https://openalex.org/I16733864"]}],"countries":["TW"],"is_corresponding":true,"raw_author_name":"D. T.-H. Chang","raw_affiliation_strings":["Department of Computer Science and Information Engineering, National Taiwan University, Taipei, 106, Taiwan, Republic of China. darby@csie.ntu.edu.tw","Department of Computer Science and Information Engineering, National Taiwan University, Taipei 106, Taiwan, Republic of China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Information Engineering, National Taiwan University, Taipei, 106, Taiwan, Republic of China. darby@csie.ntu.edu.tw","institution_ids":["https://openalex.org/I16733864"]},{"raw_affiliation_string":"Department of Computer Science and Information Engineering, National Taiwan University, Taipei 106, Taiwan, Republic of China","institution_ids":["https://openalex.org/I16733864"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052659224","display_name":"Yi-Zhong Weng","orcid":null},"institutions":[{"id":"https://openalex.org/I16733864","display_name":"National Taiwan University","ror":"https://ror.org/05bqach95","country_code":"TW","type":"education","lineage":["https://openalex.org/I16733864"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Y.-Z. Weng","raw_affiliation_strings":["National Taiwan University > > > >  >  >"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Taiwan University > > > >  >  >","institution_ids":["https://openalex.org/I16733864"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075779650","display_name":"Jung\u2010Hsin Lin","orcid":"https://orcid.org/0000-0002-6712-4994"},"institutions":[{"id":"https://openalex.org/I16733864","display_name":"National Taiwan University","ror":"https://ror.org/05bqach95","country_code":"TW","type":"education","lineage":["https://openalex.org/I16733864"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"J.-H. Lin","raw_affiliation_strings":["National Taiwan University > > > >  >  >"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Taiwan University > > > >  >  >","institution_ids":["https://openalex.org/I16733864"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039723620","display_name":"Ming\u2010Jing Hwang","orcid":"https://orcid.org/0000-0002-9657-5663"},"institutions":[{"id":"https://openalex.org/I4210096666","display_name":"Institute of Biomedical Sciences, Academia Sinica","ror":"https://ror.org/00tk6s776","country_code":"TW","type":"facility","lineage":["https://openalex.org/I4210096666","https://openalex.org/I84653119"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"M.-J. Hwang","raw_affiliation_strings":["Academia Sinica - Institute of Biomedical Sciences"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Academia Sinica - Institute of Biomedical Sciences","institution_ids":["https://openalex.org/I4210096666"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5025555646","display_name":"Yen\u2010Jen Oyang","orcid":null},"institutions":[{"id":"https://openalex.org/I16733864","display_name":"National Taiwan University","ror":"https://ror.org/05bqach95","country_code":"TW","type":"education","lineage":["https://openalex.org/I16733864"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Y.-J. Oyang","raw_affiliation_strings":["National Taiwan University > > > >  >  >"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Taiwan University > > > >  >  >","institution_ids":["https://openalex.org/I16733864"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5030417045"],"corresponding_institution_ids":["https://openalex.org/I16733864"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":1.091,"has_fulltext":false,"cited_by_count":23,"citation_normalized_percentile":{"value":0.75455436,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"34","issue":"Web Server","first_page":"W303","last_page":"W309"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.6654999852180481,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.6654999852180481,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.09009999781847,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.0284000001847744,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/protein-data-bank","display_name":"Protein Data Bank (RCSB PDB)","score":0.799412190914154},{"id":"https://openalex.org/keywords/template","display_name":"Template","score":0.7877116203308105},{"id":"https://openalex.org/keywords/protein-data-bank","display_name":"Protein Data Bank","score":0.7580762505531311},{"id":"https://openalex.org/keywords/expediting","display_name":"Expediting","score":0.7562223672866821},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.6770885586738586},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5312739610671997},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5233815908432007},{"id":"https://openalex.org/keywords/mechanism","display_name":"Mechanism (biology)","score":0.43378400802612305},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.37147679924964905},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.37084221839904785},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.343206524848938},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.3382927179336548},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.33269649744033813},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.33247610926628113},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.20442035794258118},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.19829466938972473},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.11436125636100769},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.1006862223148346},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.08390653133392334}],"concepts":[{"id":"https://openalex.org/C65556437","wikidata":"https://www.wikidata.org/wiki/Q766195","display_name":"Protein Data Bank (RCSB PDB)","level":2,"score":0.799412190914154},{"id":"https://openalex.org/C82714645","wikidata":"https://www.wikidata.org/wiki/Q438331","display_name":"Template","level":2,"score":0.7877116203308105},{"id":"https://openalex.org/C119145174","wikidata":"https://www.wikidata.org/wiki/Q7251429","display_name":"Protein Data Bank","level":3,"score":0.7580762505531311},{"id":"https://openalex.org/C134448949","wikidata":"https://www.wikidata.org/wiki/Q1384274","display_name":"Expediting","level":2,"score":0.7562223672866821},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.6770885586738586},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5312739610671997},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5233815908432007},{"id":"https://openalex.org/C89611455","wikidata":"https://www.wikidata.org/wiki/Q6804646","display_name":"Mechanism (biology)","level":2,"score":0.43378400802612305},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.37147679924964905},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.37084221839904785},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.343206524848938},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.3382927179336548},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.33269649744033813},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.33247610926628113},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.20442035794258118},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.19829466938972473},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.11436125636100769},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.1006862223148346},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.08390653133392334},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C201995342","wikidata":"https://www.wikidata.org/wiki/Q682496","display_name":"Systems engineering","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018360","descriptor_name":"Crystallography, X-Ray","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018360","descriptor_name":"Crystallography, X-Ray","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018360","descriptor_name":"Crystallography, X-Ray","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040681","descriptor_name":"Structural Homology, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D040681","descriptor_name":"Structural Homology, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D040681","descriptor_name":"Structural Homology, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1093/nar/gkl344","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkl344","pdf_url":"https://academic.oup.com/nar/article-pdf/34/suppl_2/W303/7623846/gkl344.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:16845015","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/16845015","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:140.112.114.62:246246/155167","is_oa":false,"landing_page_url":"http://ntur.lib.ntu.edu.tw//handle/246246/155167","pdf_url":null,"source":{"id":"https://openalex.org/S4306402491","display_name":"NTUR (\u81fa\u7063\u6a5f\u69cb\u5178\u85cf)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I16733864","host_organization_name":"National Taiwan University","host_organization_lineage":["https://openalex.org/I16733864"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"article"},{"id":"pmh:oai:europepmc.org:338412","is_oa":false,"landing_page_url":"http://europepmc.org/pmc/articles/PMC1538868","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:1538868","is_oa":true,"landing_page_url":"http://doi.org/10.1093/nar/gkl344","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkl344","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkl344","pdf_url":"https://academic.oup.com/nar/article-pdf/34/suppl_2/W303/7623846/gkl344.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W2089639709.pdf"},"referenced_works_count":20,"referenced_works":["https://openalex.org/W576428943","https://openalex.org/W1510161841","https://openalex.org/W1574901103","https://openalex.org/W1966190762","https://openalex.org/W1971099088","https://openalex.org/W1973578915","https://openalex.org/W1997494785","https://openalex.org/W2011952909","https://openalex.org/W2046977075","https://openalex.org/W2062663912","https://openalex.org/W2095855913","https://openalex.org/W2108211735","https://openalex.org/W2118104180","https://openalex.org/W2127866370","https://openalex.org/W2130479394","https://openalex.org/W2137698259","https://openalex.org/W2144071905","https://openalex.org/W2150398411","https://openalex.org/W2153245720","https://openalex.org/W2158714788"],"related_works":["https://openalex.org/W2088162897","https://openalex.org/W2090630809","https://openalex.org/W2106612397","https://openalex.org/W4387804157","https://openalex.org/W2518314460","https://openalex.org/W2589205199","https://openalex.org/W2119891507","https://openalex.org/W1897312405","https://openalex.org/W2058809752","https://openalex.org/W2069319199"],"abstract_inverted_index":{"UNLABELLED:":[0],"Geometrical":[1],"analysis":[2,99],"of":[3,29,44,74,79,87,109,135,149,152,199],"protein":[4,15,30,112],"tertiary":[5,104],"substructures":[6,105],"has":[7],"been":[8],"an":[9],"effective":[10],"approach":[11],"employed":[12,95],"to":[13,70,82,96,129,142,146,163],"predict":[14],"binding":[16,31],"sites.":[17],"This":[18,119,156],"article":[19,157],"presents":[20],"the":[21,35,41,48,71,77,93,98,103,107,110,114,117,130,133,138,150,160,165,170],"Protemot":[22,88,171,178],"web":[23,172,187],"server":[24,188],"that":[25,67,101,177],"carries":[26],"out":[27],"prediction":[28,166,183],"sites":[32],"based":[33,189],"on":[34,106,190],"structural":[36],"templates":[37,115],"automatically":[38],"extracted":[39],"from":[40],"crystal":[42],"structures":[43],"protein-ligand":[45],"complexes":[46],"in":[47,116,137,154],"PDB":[49,75],"(Protein":[50],"Data":[51],"Bank).":[52],"The":[53,85],"automatic":[54],"extraction":[55],"mechanism":[56,94,121],"is":[57,89,122],"essential":[58,123],"for":[59,124],"creating":[60],"and":[61],"maintaining":[62],"a":[63,181,186,191],"comprehensive":[64],"template":[65,139,194],"library":[66,140,195],"timely":[68],"accommodates":[69],"new":[72],"release":[73],"as":[76,132],"number":[78,134,151],"entries":[80,136,153],"continues":[81,141],"grow":[83,143],"rapidly.":[84],"design":[86],"also":[90,158],"distinctive":[91],"by":[92,169],"expedite":[97],"process":[100],"matches":[102],"contour":[108],"query":[111],"with":[113,196],"library.":[118],"expediting":[120],"providing":[125],"reasonable":[126],"response":[127],"time":[128],"user":[131],"rapidly":[144],"due":[145],"rapid":[147],"growth":[148],"PDB.":[155],"reports":[159],"experiments":[161],"conducted":[162],"evaluate":[164],"power":[167,184],"delivered":[168],"server.":[173],"Experimental":[174],"results":[175],"show":[176],"can":[179],"deliver":[180],"superior":[182],"than":[185],"manually":[192],"curated":[193],"insufficient":[197],"quantity":[198],"entries.":[200],"AVAILABILITY:":[201],"http://protemot.csie.ntu.edu.tw/step1.cgi":[202],"http://bioinfo.mc.ntu.edu.tw/protemot/step1.cgi.":[203]},"counts_by_year":[{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":2},{"year":2018,"cited_by_count":1},{"year":2016,"cited_by_count":2},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":3}],"updated_date":"2026-06-16T07:32:37.131356","created_date":"2025-10-10T00:00:00"}