{"id":"https://openalex.org/W2157808276","doi":"https://doi.org/10.1093/nar/gkl337","title":"FeatureScan: revealing property-dependent similarity of nucleotide sequences","display_name":"FeatureScan: revealing property-dependent similarity of nucleotide sequences","publication_year":2006,"publication_date":"2006-07-01","ids":{"openalex":"https://openalex.org/W2157808276","doi":"https://doi.org/10.1093/nar/gkl337","mag":"2157808276","pmid":"https://pubmed.ncbi.nlm.nih.gov/16845077"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkl337","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkl337","pdf_url":"https://academic.oup.com/nar/article-pdf/34/suppl_2/W591/7623805/gkl337.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/34/suppl_2/W591/7623805/gkl337.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5044381779","display_name":"Igor V. Deyneko","orcid":"https://orcid.org/0000-0002-3173-9604"},"institutions":[{"id":"https://openalex.org/I4210116466","display_name":"Institute of Cytology and Genetics","ror":"https://ror.org/0277xgb12","country_code":"RU","type":"facility","lineage":["https://openalex.org/I1313323035","https://openalex.org/I1313323035","https://openalex.org/I188973947","https://openalex.org/I4210116466","https://openalex.org/I4210127387","https://openalex.org/I4210129690"]},{"id":"https://openalex.org/I4210127387","display_name":"Siberian Branch of the Russian Academy of Sciences","ror":"https://ror.org/02frkq021","country_code":"RU","type":"funder","lineage":["https://openalex.org/I1313323035","https://openalex.org/I4210127387"]},{"id":"https://openalex.org/I4210124929","display_name":"Helmholtz Centre for Infection Research","ror":"https://ror.org/03d0p2685","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I4210124929"]}],"countries":["DE","RU"],"is_corresponding":true,"raw_author_name":"I. V. Deyneko","raw_affiliation_strings":["Department of Genome Analysis, GBF (German Research Centre for Biotechnology), D-38124 Braunschweig, Germany","Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia,","Department of Genome Analysis, GBF (German Research Centre for Biotechnology), D-38124 Braunschweig, Germany,"],"affiliations":[{"raw_affiliation_string":"Department of Genome Analysis, GBF (German Research Centre for Biotechnology), D-38124 Braunschweig, Germany","institution_ids":[]},{"raw_affiliation_string":"Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia,","institution_ids":["https://openalex.org/I4210116466","https://openalex.org/I4210127387"]},{"raw_affiliation_string":"Department of Genome Analysis, GBF (German Research Centre for Biotechnology), D-38124 Braunschweig, Germany,","institution_ids":["https://openalex.org/I4210124929"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5098506646","display_name":"B. Bredohl","orcid":null},"institutions":[{"id":"https://openalex.org/I4210124929","display_name":"Helmholtz Centre for Infection Research","ror":"https://ror.org/03d0p2685","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I4210124929"]},{"id":"https://openalex.org/I4210104665","display_name":"University of Applied Sciences Emden Leer","ror":"https://ror.org/01bc76c69","country_code":"DE","type":"education","lineage":["https://openalex.org/I4210104665"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"B. Bredohl","raw_affiliation_strings":["Department of Genome Analysis, GBF (German Research Centre for Biotechnology), D-38124 Braunschweig, Germany,","University of Applied Sciences, D-26723 Emden, Germany"],"affiliations":[{"raw_affiliation_string":"Department of Genome Analysis, GBF (German Research Centre for Biotechnology), D-38124 Braunschweig, Germany,","institution_ids":["https://openalex.org/I4210124929"]},{"raw_affiliation_string":"University of Applied Sciences, D-26723 Emden, Germany","institution_ids":["https://openalex.org/I4210104665"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5098172234","display_name":"D. Wesely","orcid":null},"institutions":[{"id":"https://openalex.org/I4210104665","display_name":"University of Applied Sciences Emden Leer","ror":"https://ror.org/01bc76c69","country_code":"DE","type":"education","lineage":["https://openalex.org/I4210104665"]},{"id":"https://openalex.org/I4210124929","display_name":"Helmholtz Centre for Infection Research","ror":"https://ror.org/03d0p2685","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I4210124929"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"D. Wesely","raw_affiliation_strings":["Department of Genome Analysis, GBF (German Research Centre for Biotechnology), D-38124 Braunschweig, Germany,","University of Applied Sciences, D-26723 Emden, Germany"],"affiliations":[{"raw_affiliation_string":"Department of Genome Analysis, GBF (German Research Centre for Biotechnology), D-38124 Braunschweig, Germany,","institution_ids":["https://openalex.org/I4210124929"]},{"raw_affiliation_string":"University of Applied Sciences, D-26723 Emden, Germany","institution_ids":["https://openalex.org/I4210104665"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023875876","display_name":"Yulia M. Kalybaeva","orcid":null},"institutions":[{"id":"https://openalex.org/I4210124929","display_name":"Helmholtz Centre for Infection Research","ror":"https://ror.org/03d0p2685","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I4210124929"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Y. M. Kalybaeva","raw_affiliation_strings":["Department of Genome Analysis, GBF (German Research Centre for Biotechnology), D-38124 Braunschweig, Germany,"],"affiliations":[{"raw_affiliation_string":"Department of Genome Analysis, GBF (German Research Centre for Biotechnology), D-38124 Braunschweig, Germany,","institution_ids":["https://openalex.org/I4210124929"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016954113","display_name":"Alexander Kel","orcid":"https://orcid.org/0000-0001-6775-2467"},"institutions":[{"id":"https://openalex.org/I4210120325","display_name":"Biobase (Germany)","ror":"https://ror.org/0325nt175","country_code":"DE","type":"company","lineage":["https://openalex.org/I4210120325"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"A. E. Kel","raw_affiliation_strings":["BIOBASE GmbH, D-38300 Wolfenbu ttel, Germany and","BIOBASE GmbH, D-38300 Wolfenbu \u00a8ttel, Germany and"],"affiliations":[{"raw_affiliation_string":"BIOBASE GmbH, D-38300 Wolfenbu ttel, Germany and","institution_ids":["https://openalex.org/I4210120325"]},{"raw_affiliation_string":"BIOBASE GmbH, D-38300 Wolfenbu \u00a8ttel, Germany and","institution_ids":["https://openalex.org/I4210120325"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000095647","display_name":"Helmut Bl\u00f6cker","orcid":null},"institutions":[{"id":"https://openalex.org/I4210124929","display_name":"Helmholtz Centre for Infection Research","ror":"https://ror.org/03d0p2685","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I4210124929"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"H. Blocker","raw_affiliation_strings":["Department of Genome Analysis, GBF (German Research Centre for Biotechnology), D-38124 Braunschweig, Germany,"],"affiliations":[{"raw_affiliation_string":"Department of Genome Analysis, GBF (German Research Centre for Biotechnology), D-38124 Braunschweig, Germany,","institution_ids":["https://openalex.org/I4210124929"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5037011542","display_name":"Gerhard Kauer","orcid":null},"institutions":[{"id":"https://openalex.org/I4210104665","display_name":"University of Applied Sciences Emden Leer","ror":"https://ror.org/01bc76c69","country_code":"DE","type":"education","lineage":["https://openalex.org/I4210104665"]},{"id":"https://openalex.org/I4210124929","display_name":"Helmholtz Centre for Infection Research","ror":"https://ror.org/03d0p2685","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I4210124929"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"G. Kauer","raw_affiliation_strings":["Department of Genome Analysis, GBF (German Research Centre for Biotechnology), D-38124 Braunschweig, Germany,","University of Applied Sciences, D-26723 Emden, Germany"],"affiliations":[{"raw_affiliation_string":"Department of Genome Analysis, GBF (German Research Centre for Biotechnology), D-38124 Braunschweig, Germany,","institution_ids":["https://openalex.org/I4210124929"]},{"raw_affiliation_string":"University of Applied Sciences, D-26723 Emden, Germany","institution_ids":["https://openalex.org/I4210104665"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5044381779"],"corresponding_institution_ids":["https://openalex.org/I4210116466","https://openalex.org/I4210124929","https://openalex.org/I4210127387"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":0.0,"has_fulltext":true,"cited_by_count":12,"citation_normalized_percentile":{"value":0.13631791,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"34","issue":"Web Server","first_page":"W591","last_page":"W595"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10120","display_name":"Bacterial Genetics and Biotechnology","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.8263235688209534},{"id":"https://openalex.org/keywords/ensembl","display_name":"Ensembl","score":0.7911701202392578},{"id":"https://openalex.org/keywords/executable","display_name":"Executable","score":0.6766457557678223},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.6146079301834106},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.5656434297561646},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.5135703086853027},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.49676448106765747},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.4874553680419922},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4835771918296814},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.4596422016620636},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.4513598084449768},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.4426141381263733},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.41410937905311584},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.2903324067592621},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.2580565810203552},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.18495485186576843},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.1795670986175537},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.15979337692260742},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.09818717837333679},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.09289157390594482}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8263235688209534},{"id":"https://openalex.org/C141674004","wikidata":"https://www.wikidata.org/wiki/Q1344256","display_name":"Ensembl","level":5,"score":0.7911701202392578},{"id":"https://openalex.org/C160145156","wikidata":"https://www.wikidata.org/wiki/Q778586","display_name":"Executable","level":2,"score":0.6766457557678223},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.6146079301834106},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.5656434297561646},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.5135703086853027},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.49676448106765747},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4874553680419922},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4835771918296814},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.4596422016620636},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.4513598084449768},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.4426141381263733},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.41410937905311584},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.2903324067592621},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.2580565810203552},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.18495485186576843},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.1795670986175537},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.15979337692260742},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.09818717837333679},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.09289157390594482},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012689","descriptor_name":"Sequence Homology, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012689","descriptor_name":"Sequence Homology, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012689","descriptor_name":"Sequence Homology, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051381","descriptor_name":"Rats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051381","descriptor_name":"Rats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051381","descriptor_name":"Rats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/nar/gkl337","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkl337","pdf_url":"https://academic.oup.com/nar/article-pdf/34/suppl_2/W591/7623805/gkl337.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:16845077","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/16845077","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:1538849","is_oa":true,"landing_page_url":"http://doi.org/10.1093/nar/gkl337","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.102.9528","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.102.9528","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/cgi/screenpdf/34/suppl_2/W591.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.99.8447","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.99.8447","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/cgi/reprint/34/suppl_2/W591.pdf","raw_type":"text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkl337","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkl337","pdf_url":"https://academic.oup.com/nar/article-pdf/34/suppl_2/W591/7623805/gkl337.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2157808276.pdf","grobid_xml":"https://content.openalex.org/works/W2157808276.grobid-xml"},"referenced_works_count":15,"referenced_works":["https://openalex.org/W1560013842","https://openalex.org/W1586136333","https://openalex.org/W1973468493","https://openalex.org/W2009095852","https://openalex.org/W2013739996","https://openalex.org/W2079131652","https://openalex.org/W2085442947","https://openalex.org/W2089734341","https://openalex.org/W2103916940","https://openalex.org/W2123243961","https://openalex.org/W2132618831","https://openalex.org/W2165133126","https://openalex.org/W2495120729","https://openalex.org/W3140847177","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W2156564520","https://openalex.org/W4307843054","https://openalex.org/W2104570606","https://openalex.org/W4210430020","https://openalex.org/W4250611210","https://openalex.org/W4248160505","https://openalex.org/W2112118427","https://openalex.org/W4205247356","https://openalex.org/W2464717012","https://openalex.org/W2565027272"],"abstract_inverted_index":{"FeatureScan":[0,39,85,97,138],"is":[1,86,98],"a":[2,43,47,56,61,102],"software":[3],"package":[4],"aiming":[5],"to":[6,74],"reveal":[7],"novel":[8],"types":[9],"of":[10,21,84,92,129,137],"DNA":[11,22,58],"sequence":[12,45],"similarity":[13],"by":[14,54],"comparing":[15],"physico-chemical":[16],"properties.":[17],"Thirty-eight":[18],"different":[19],"parameters":[20,31],"double":[23],"strands":[24],"such":[25],"as":[26,101,132],"charge,":[27],"melting":[28],"enthalpy,":[29],"conformational":[30],"and":[32,46,60,71,126],"the":[33,93],"like":[34],"are":[35,52,66,114,139],"provided.":[36],"As":[37,90],"input":[38],"requires":[40],"two":[41],"sequences,":[42],"pattern":[44],"target":[48,133],"sequence,":[49],"search":[50],"conditions":[51],"set":[53],"selecting":[55],"specific":[57],"parameter":[59],"threshold":[62],"value.":[63],"Search":[64],"results":[65],"displayed":[67],"in":[68],"FASTA":[69],"format":[70],"directly":[72],"linked":[73],"external":[75],"genome":[76],"databases/browsers":[77],"(ENSEMBL,":[78],"NCBI,":[79],"UCSC).":[80],"An":[81],"Internet":[82,118],"version":[83],"accessible":[87,100],"at":[88,105,116],"http://genome.gbf.de/featurescan/.":[89],"part":[91],"HOBIT":[94],"initiative":[95],"(http://hobit.sourceforge.net/)":[96],"also":[99],"web":[103],"service":[104],"its":[106],"above":[107],"home":[108],"page.":[109],"Currently,":[110],"several":[111],"preloaded":[112],"genomes":[113],"provided":[115],"this":[117],"website":[119],"(Homo":[120],"sapiens,":[121],"Mus":[122],"musculus,":[123],"Rattus":[124],"norvegicus":[125],"four":[127],"strains":[128],"Escherichia":[130],"coli)":[131],"sequences.":[134],"Standalone":[135],"executables":[136],"available":[140],"on":[141],"request.":[142]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2018,"cited_by_count":3},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":1},{"year":2013,"cited_by_count":1}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
