{"id":"https://openalex.org/W2146565683","doi":"https://doi.org/10.1093/nar/gkl329","title":"JProGO: a novel tool for the functional interpretation of prokaryotic microarray data using Gene Ontology information","display_name":"JProGO: a novel tool for the functional interpretation of prokaryotic microarray data using Gene Ontology information","publication_year":2006,"publication_date":"2006-07-01","ids":{"openalex":"https://openalex.org/W2146565683","doi":"https://doi.org/10.1093/nar/gkl329","mag":"2146565683","pmid":"https://pubmed.ncbi.nlm.nih.gov/16845060"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkl329","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkl329","pdf_url":"https://academic.oup.com/nar/article-pdf/34/suppl_2/W510/7623756/gkl329.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/34/suppl_2/W510/7623756/gkl329.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5005480531","display_name":"Maurice Scheer","orcid":null},"institutions":[{"id":"https://openalex.org/I94509681","display_name":"Technische Universit\u00e4t Braunschweig","ror":"https://ror.org/010nsgg66","country_code":"DE","type":"education","lineage":["https://openalex.org/I94509681"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"M. Scheer","raw_affiliation_strings":["Institute of Microbiology, Technische Universit\u00e4t, Braunschweig Spielmannstrasse 7, Braunschweig, 38106, Germany","Institute of Microbiology, Technische Universit\u00e4t Braunschweig, Spielmannstrasse 7, Braunschweig, 38106, Germany"],"affiliations":[{"raw_affiliation_string":"Institute of Microbiology, Technische Universit\u00e4t, Braunschweig Spielmannstrasse 7, Braunschweig, 38106, Germany","institution_ids":[]},{"raw_affiliation_string":"Institute of Microbiology, Technische Universit\u00e4t Braunschweig, Spielmannstrasse 7, Braunschweig, 38106, Germany","institution_ids":["https://openalex.org/I94509681"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049605606","display_name":"Frank Klawonn","orcid":"https://orcid.org/0000-0001-9613-182X"},"institutions":[{"id":"https://openalex.org/I2799859273","display_name":"Ostfalia University of Applied Sciences","ror":"https://ror.org/01bk10867","country_code":"DE","type":"education","lineage":["https://openalex.org/I2799859273"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"F. Klawonn","raw_affiliation_strings":["Department of Computer Science, Fachhochschule Wolfenbu ttel, Am Exer 2, Wolfenbu ttel, 38302, Germany and","Department of Computer Science, Fachhochschule Wolfenbu \u00a8ttel, Am Exer 2, Wolfenbu \u00a8ttel, 38302, Germany and"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Fachhochschule Wolfenbu ttel, Am Exer 2, Wolfenbu ttel, 38302, Germany and","institution_ids":["https://openalex.org/I2799859273"]},{"raw_affiliation_string":"Department of Computer Science, Fachhochschule Wolfenbu \u00a8ttel, Am Exer 2, Wolfenbu \u00a8ttel, 38302, Germany and","institution_ids":["https://openalex.org/I2799859273"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109332116","display_name":"Richard M\u00fcnch","orcid":null},"institutions":[{"id":"https://openalex.org/I94509681","display_name":"Technische Universit\u00e4t Braunschweig","ror":"https://ror.org/010nsgg66","country_code":"DE","type":"education","lineage":["https://openalex.org/I94509681"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"R. Munch","raw_affiliation_strings":["Institute of Microbiology, Technische Universita \u00a8t Braunschweig, Spielmannstrasse 7, Braunschweig, 38106, Germany,"],"affiliations":[{"raw_affiliation_string":"Institute of Microbiology, Technische Universita \u00a8t Braunschweig, Spielmannstrasse 7, Braunschweig, 38106, Germany,","institution_ids":["https://openalex.org/I94509681"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085724695","display_name":"Andreas Grote","orcid":null},"institutions":[{"id":"https://openalex.org/I94509681","display_name":"Technische Universit\u00e4t Braunschweig","ror":"https://ror.org/010nsgg66","country_code":"DE","type":"education","lineage":["https://openalex.org/I94509681"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"A. Grote","raw_affiliation_strings":["Institute of Biochemical Engineering, Technische Universita t Braunschweig, Gaussstrasse 17, Braunschweig, 38106, Germany,","Institute of Microbiology, Technische Universita t Braunschweig, Spielmannstrasse 7, Braunschweig, 38106, Germany,","Institute of Biochemical Engineering, Technische Universita \u00a8t Braunschweig, Gaussstrasse 17, Braunschweig, 38106, Germany,","Institute of Microbiology, Technische Universita \u00a8t Braunschweig, Spielmannstrasse 7, Braunschweig, 38106, Germany,"],"affiliations":[{"raw_affiliation_string":"Institute of Biochemical Engineering, Technische Universita t Braunschweig, Gaussstrasse 17, Braunschweig, 38106, Germany,","institution_ids":["https://openalex.org/I94509681"]},{"raw_affiliation_string":"Institute of Microbiology, Technische Universita t Braunschweig, Spielmannstrasse 7, Braunschweig, 38106, Germany,","institution_ids":["https://openalex.org/I94509681"]},{"raw_affiliation_string":"Institute of Biochemical Engineering, Technische Universita \u00a8t Braunschweig, Gaussstrasse 17, Braunschweig, 38106, Germany,","institution_ids":["https://openalex.org/I94509681"]},{"raw_affiliation_string":"Institute of Microbiology, Technische Universita \u00a8t Braunschweig, Spielmannstrasse 7, Braunschweig, 38106, Germany,","institution_ids":["https://openalex.org/I94509681"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077222776","display_name":"Karsten Hiller","orcid":"https://orcid.org/0000-0001-9322-5820"},"institutions":[{"id":"https://openalex.org/I186903577","display_name":"University of Luxembourg","ror":"https://ror.org/036x5ad56","country_code":"LU","type":"education","lineage":["https://openalex.org/I186903577"]},{"id":"https://openalex.org/I94509681","display_name":"Technische Universit\u00e4t Braunschweig","ror":"https://ror.org/010nsgg66","country_code":"DE","type":"education","lineage":["https://openalex.org/I94509681"]}],"countries":["DE","LU"],"is_corresponding":false,"raw_author_name":"K. Hiller","raw_affiliation_strings":["Institute of Microbiology, Technische Universita t Braunschweig, Spielmannstrasse 7, Braunschweig, 38106, Germany,","University of Luxembourg > Luxembourg Centre for Systems Biomedicine (LCSB)"],"affiliations":[{"raw_affiliation_string":"Institute of Microbiology, Technische Universita t Braunschweig, Spielmannstrasse 7, Braunschweig, 38106, Germany,","institution_ids":["https://openalex.org/I94509681"]},{"raw_affiliation_string":"University of Luxembourg > Luxembourg Centre for Systems Biomedicine (LCSB)","institution_ids":["https://openalex.org/I186903577"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109248382","display_name":"Claudia Choi","orcid":null},"institutions":[{"id":"https://openalex.org/I94509681","display_name":"Technische Universit\u00e4t Braunschweig","ror":"https://ror.org/010nsgg66","country_code":"DE","type":"education","lineage":["https://openalex.org/I94509681"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"C. Choi","raw_affiliation_strings":["Institute of Microbiology, Technische Universita t Braunschweig, Spielmannstrasse 7, Braunschweig, 38106, Germany,","Institute of Microbiology, Technische Universita \u00a8t Braunschweig, Spielmannstrasse 7, Braunschweig, 38106, Germany,"],"affiliations":[{"raw_affiliation_string":"Institute of Microbiology, Technische Universita t Braunschweig, Spielmannstrasse 7, Braunschweig, 38106, Germany,","institution_ids":["https://openalex.org/I94509681"]},{"raw_affiliation_string":"Institute of Microbiology, Technische Universita \u00a8t Braunschweig, Spielmannstrasse 7, Braunschweig, 38106, Germany,","institution_ids":["https://openalex.org/I94509681"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015346451","display_name":"Ina Koch","orcid":"https://orcid.org/0000-0002-3621-003X"},"institutions":[{"id":"https://openalex.org/I129643931","display_name":"Berliner Hochschule f\u00fcr Technik","ror":"https://ror.org/00w7whj55","country_code":"DE","type":"education","lineage":["https://openalex.org/I129643931"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"I. Koch","raw_affiliation_strings":["Department of Bioinformatics, Technische Fachhochschule Berlin, Seestrasse 64, Berlin, 13347, Germany"],"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics, Technische Fachhochschule Berlin, Seestrasse 64, Berlin, 13347, Germany","institution_ids":["https://openalex.org/I129643931"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034151885","display_name":"Max Schobert","orcid":null},"institutions":[{"id":"https://openalex.org/I94509681","display_name":"Technische Universit\u00e4t Braunschweig","ror":"https://ror.org/010nsgg66","country_code":"DE","type":"education","lineage":["https://openalex.org/I94509681"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"M. Schobert","raw_affiliation_strings":["Institute of Microbiology, Technische Universita t Braunschweig, Spielmannstrasse 7, Braunschweig, 38106, Germany,","Institute of Microbiology, Technische Universita \u00a8t Braunschweig, Spielmannstrasse 7, Braunschweig, 38106, Germany,"],"affiliations":[{"raw_affiliation_string":"Institute of Microbiology, Technische Universita t Braunschweig, Spielmannstrasse 7, Braunschweig, 38106, Germany,","institution_ids":["https://openalex.org/I94509681"]},{"raw_affiliation_string":"Institute of Microbiology, Technische Universita \u00a8t Braunschweig, Spielmannstrasse 7, Braunschweig, 38106, Germany,","institution_ids":["https://openalex.org/I94509681"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113686761","display_name":"Elisabeth H\u00e4rtig","orcid":null},"institutions":[{"id":"https://openalex.org/I94509681","display_name":"Technische Universit\u00e4t Braunschweig","ror":"https://ror.org/010nsgg66","country_code":"DE","type":"education","lineage":["https://openalex.org/I94509681"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"E. Hartig","raw_affiliation_strings":["Institute of Microbiology, Technische Universita \u00a8t Braunschweig, Spielmannstrasse 7, Braunschweig, 38106, Germany,"],"affiliations":[{"raw_affiliation_string":"Institute of Microbiology, Technische Universita \u00a8t Braunschweig, Spielmannstrasse 7, Braunschweig, 38106, Germany,","institution_ids":["https://openalex.org/I94509681"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5097511212","display_name":"U. Klages","orcid":null},"institutions":[{"id":"https://openalex.org/I2799859273","display_name":"Ostfalia University of Applied Sciences","ror":"https://ror.org/01bk10867","country_code":"DE","type":"education","lineage":["https://openalex.org/I2799859273"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"U. Klages","raw_affiliation_strings":["Department of Computer Science, Fachhochschule Wolfenbu ttel, Am Exer 2, Wolfenbu ttel, 38302, Germany and","Department of Computer Science, Fachhochschule Wolfenbu \u00a8ttel, Am Exer 2, Wolfenbu \u00a8ttel, 38302, Germany and"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Fachhochschule Wolfenbu ttel, Am Exer 2, Wolfenbu ttel, 38302, Germany and","institution_ids":["https://openalex.org/I2799859273"]},{"raw_affiliation_string":"Department of Computer Science, Fachhochschule Wolfenbu \u00a8ttel, Am Exer 2, Wolfenbu \u00a8ttel, 38302, Germany and","institution_ids":["https://openalex.org/I2799859273"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5041916369","display_name":"Dieter Jahn","orcid":"https://orcid.org/0000-0002-4064-9205"},"institutions":[{"id":"https://openalex.org/I94509681","display_name":"Technische Universit\u00e4t Braunschweig","ror":"https://ror.org/010nsgg66","country_code":"DE","type":"education","lineage":["https://openalex.org/I94509681"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"D. Jahn","raw_affiliation_strings":["Institute of Microbiology, Technische Universita t Braunschweig, Spielmannstrasse 7, Braunschweig, 38106, Germany,","Institute of Microbiology, Technische Universita \u00a8t Braunschweig, Spielmannstrasse 7, Braunschweig, 38106, Germany,"],"affiliations":[{"raw_affiliation_string":"Institute of Microbiology, Technische Universita t Braunschweig, Spielmannstrasse 7, Braunschweig, 38106, Germany,","institution_ids":["https://openalex.org/I94509681"]},{"raw_affiliation_string":"Institute of Microbiology, Technische Universita \u00a8t Braunschweig, Spielmannstrasse 7, Braunschweig, 38106, Germany,","institution_ids":["https://openalex.org/I94509681"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":11,"corresponding_author_ids":["https://openalex.org/A5005480531"],"corresponding_institution_ids":["https://openalex.org/I94509681"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":2.7244,"has_fulltext":true,"cited_by_count":32,"citation_normalized_percentile":{"value":0.90050372,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"34","issue":"Web Server","first_page":"W510","last_page":"W515"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6914023160934448},{"id":"https://openalex.org/keywords/microarray-analysis-techniques","display_name":"Microarray analysis techniques","score":0.5500428676605225},{"id":"https://openalex.org/keywords/microarray-databases","display_name":"Microarray databases","score":0.5238249897956848},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.49043533205986023},{"id":"https://openalex.org/keywords/statistical-hypothesis-testing","display_name":"Statistical hypothesis testing","score":0.47460120916366577},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.46279028058052063},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.4281885623931885},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.4265814423561096},{"id":"https://openalex.org/keywords/gene-ontology","display_name":"Gene ontology","score":0.4247097671031952},{"id":"https://openalex.org/keywords/interpretation","display_name":"Interpretation (philosophy)","score":0.4156213402748108},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3587028980255127},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3394564986228943},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.334070086479187},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.25743573904037476},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.19858989119529724},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.11554408073425293},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.08982455730438232}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6914023160934448},{"id":"https://openalex.org/C8415881","wikidata":"https://www.wikidata.org/wiki/Q6839217","display_name":"Microarray analysis techniques","level":4,"score":0.5500428676605225},{"id":"https://openalex.org/C548314002","wikidata":"https://www.wikidata.org/wiki/Q6839218","display_name":"Microarray databases","level":5,"score":0.5238249897956848},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.49043533205986023},{"id":"https://openalex.org/C87007009","wikidata":"https://www.wikidata.org/wiki/Q210832","display_name":"Statistical hypothesis testing","level":2,"score":0.47460120916366577},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.46279028058052063},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.4281885623931885},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.4265814423561096},{"id":"https://openalex.org/C2987395477","wikidata":"https://www.wikidata.org/wiki/Q135085","display_name":"Gene ontology","level":4,"score":0.4247097671031952},{"id":"https://openalex.org/C527412718","wikidata":"https://www.wikidata.org/wiki/Q855395","display_name":"Interpretation (philosophy)","level":2,"score":0.4156213402748108},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3587028980255127},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3394564986228943},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.334070086479187},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.25743573904037476},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.19858989119529724},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.11554408073425293},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.08982455730438232},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001105","descriptor_name":"Archaea","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001105","descriptor_name":"Archaea","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001105","descriptor_name":"Archaea","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003627","descriptor_name":"Data Interpretation, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003627","descriptor_name":"Data Interpretation, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003627","descriptor_name":"Data Interpretation, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005798","descriptor_name":"Genes, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005798","descriptor_name":"Genes, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005798","descriptor_name":"Genes, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019766","descriptor_name":"Genes, Archaeal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019766","descriptor_name":"Genes, Archaeal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019766","descriptor_name":"Genes, Archaeal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1093/nar/gkl329","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkl329","pdf_url":"https://academic.oup.com/nar/article-pdf/34/suppl_2/W510/7623756/gkl329.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:16845060","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/16845060","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.489.5555","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.489.5555","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://public.rz.fh-wolfenbuettel.de/~klawonn/Papers/scheer_et_al_nar34_2006.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.537.722","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.537.722","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/content/34/suppl_2/W510.full-text-lowres.pdf","raw_type":"text"},{"id":"pmh:oai:europepmc.org:338340","is_oa":false,"landing_page_url":"http://europepmc.org/pmc/articles/PMC1538798","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:orbilu.uni.lu:10993/17738","is_oa":true,"landing_page_url":"http://orbilu.uni.lu/handle/10993/17738","pdf_url":null,"source":{"id":"https://openalex.org/S4306401815","display_name":"Open Repository and Bibliography (University of Luxembourg)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I186903577","host_organization_name":"University of Luxembourg","host_organization_lineage":["https://openalex.org/I186903577"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-sa","license_id":"https://openalex.org/licenses/cc-by-nc-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Research. Oxford, United Kingdom: Oxford University Press (2006).","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:1538798","is_oa":true,"landing_page_url":"http://doi.org/10.1093/nar/gkl329","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkl329","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkl329","pdf_url":"https://academic.oup.com/nar/article-pdf/34/suppl_2/W510/7623756/gkl329.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4300000071525574,"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15"}],"awards":[{"id":"https://openalex.org/G3914568705","display_name":null,"funder_award_id":"This work was funded by the German Federal Ministr","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G7225624288","display_name":null,"funder_award_id":"This work was","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"}],"funders":[{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2146565683.pdf","grobid_xml":"https://content.openalex.org/works/W2146565683.grobid-xml"},"referenced_works_count":26,"referenced_works":["https://openalex.org/W1596515083","https://openalex.org/W1869362176","https://openalex.org/W1964895626","https://openalex.org/W1987005877","https://openalex.org/W2000424161","https://openalex.org/W2030923426","https://openalex.org/W2055016234","https://openalex.org/W2062663912","https://openalex.org/W2101595316","https://openalex.org/W2102074241","https://openalex.org/W2103017472","https://openalex.org/W2110065044","https://openalex.org/W2111874188","https://openalex.org/W2122863959","https://openalex.org/W2123106337","https://openalex.org/W2124388496","https://openalex.org/W2127833142","https://openalex.org/W2130410032","https://openalex.org/W2138247507","https://openalex.org/W2139036189","https://openalex.org/W2139703939","https://openalex.org/W2157795344","https://openalex.org/W2161732286","https://openalex.org/W2166574880","https://openalex.org/W2582743722","https://openalex.org/W4294107304"],"related_works":["https://openalex.org/W2943416042","https://openalex.org/W2056932428","https://openalex.org/W3023720143","https://openalex.org/W2490137852","https://openalex.org/W4285794008","https://openalex.org/W2400333626","https://openalex.org/W1483316219","https://openalex.org/W2412120523","https://openalex.org/W4255041873","https://openalex.org/W2101002487"],"abstract_inverted_index":{"A":[0],"novel":[1],"program":[2,98],"suite":[3],"was":[4],"implemented":[5],"for":[6,88,109,157],"the":[7,17,27,31,45,54,67,80,83,97,102,107,133,158,167,170],"functional":[8],"interpretation":[9,32],"of":[10,19,26,33,44,69,82,96,101,135],"high-throughput":[11],"gene":[12,104],"expression":[13,75],"data":[14,35,92,137],"based":[15],"on":[16,30],"identification":[18],"Gene":[20],"Ontology":[21],"(GO)":[22],"nodes.":[23,129],"The":[24,38],"focus":[25],"analysis":[28,134],"lies":[29],"microarray":[34,91,136],"from":[36,138],"prokaryotes.":[37],"three":[39],"well":[40,52],"established":[41],"statistical":[42],"methods":[43],"threshold":[46,55],"value-based":[47],"Fisher's":[48],"exact":[49],"test,":[50],"as":[51,53,118,122],"value-independent":[56],"Kolmogorov-Smirnov":[57],"and":[58,106,121,150],"Student's":[59],"t-test":[60],"were":[61],"employed":[62],"in":[63],"order":[64],"to":[65],"identify":[66],"groups":[68],"genes":[70],"with":[71],"a":[72,89,119,123,153],"significantly":[73],"altered":[74],"profile.":[76],"Furthermore,":[77],"we":[78],"provide":[79],"application":[81],"rank-based":[84],"unpaired":[85],"Wilcoxon's":[86],"test":[87],"GO-based":[90],"interpretation.":[93],"Further":[94],"features":[95],"include":[99],"recognition":[100],"alternative":[103],"names":[105],"correction":[108],"multiple":[110],"testing.":[111],"Obtained":[112],"results":[113],"are":[114],"visualized":[115],"interactively":[116],"both":[117],"table":[120],"GO":[124],"subgraph":[125],"including":[126,145],"all":[127,146],"significant":[128],"Currently,":[130],"JProGO":[131,162],"enables":[132],"more":[139],"than":[140],"20":[141],"different":[142],"prokaryotic":[143],"species,":[144],"important":[147],"model":[148],"organisms,":[149],"thus":[151],"constitutes":[152],"useful":[154],"web":[155,168],"service":[156],"microbial":[159],"research":[160],"community.":[161],"is":[163],"freely":[164],"accessible":[165],"via":[166],"at":[169],"following":[171],"address:":[172],"http://www.jprogo.de.":[173]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":2},{"year":2014,"cited_by_count":1},{"year":2012,"cited_by_count":2}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}