{"id":"https://openalex.org/W2119916585","doi":"https://doi.org/10.1093/nar/gkl312","title":"The ARTS web server for aligning RNA tertiary structures","display_name":"The ARTS web server for aligning RNA tertiary structures","publication_year":2006,"publication_date":"2006-07-01","ids":{"openalex":"https://openalex.org/W2119916585","doi":"https://doi.org/10.1093/nar/gkl312","mag":"2119916585","pmid":"https://pubmed.ncbi.nlm.nih.gov/16845038"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkl312","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkl312","pdf_url":"https://academic.oup.com/nar/article-pdf/34/suppl_2/W412/7623685/gkl312.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/34/suppl_2/W412/7623685/gkl312.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5032369751","display_name":"Orit Dror","orcid":null},"institutions":[{"id":"https://openalex.org/I16391192","display_name":"Tel Aviv University","ror":"https://ror.org/04mhzgx49","country_code":"IL","type":"education","lineage":["https://openalex.org/I16391192"]},{"id":"https://openalex.org/I4210107917","display_name":"Exact Sciences (United States)","ror":"https://ror.org/01kc31v38","country_code":"US","type":"company","lineage":["https://openalex.org/I4210107917"]}],"countries":["IL","US"],"is_corresponding":true,"raw_author_name":"O. Dror","raw_affiliation_strings":["School of Computer Science, Raymond and Beverly Sackler Faculty of Exact Sciences, Tel Aviv University, Tel Aviv 69978, Israel. oranit@post.tau.ac.il","School of Computer Science, Raymond and Beverly Sackler Faculty of Exact Sciences, Tel Aviv University, Tel Aviv 69978, Israel"],"affiliations":[{"raw_affiliation_string":"School of Computer Science, Raymond and Beverly Sackler Faculty of Exact Sciences, Tel Aviv University, Tel Aviv 69978, Israel. oranit@post.tau.ac.il","institution_ids":["https://openalex.org/I4210107917","https://openalex.org/I16391192"]},{"raw_affiliation_string":"School of Computer Science, Raymond and Beverly Sackler Faculty of Exact Sciences, Tel Aviv University, Tel Aviv 69978, Israel","institution_ids":["https://openalex.org/I16391192"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025357844","display_name":"Ruth Nussinov","orcid":"https://orcid.org/0000-0002-8115-6415"},"institutions":[{"id":"https://openalex.org/I16391192","display_name":"Tel Aviv University","ror":"https://ror.org/04mhzgx49","country_code":"IL","type":"education","lineage":["https://openalex.org/I16391192"]},{"id":"https://openalex.org/I4210149717","display_name":"Center for Cancer Research","ror":"https://ror.org/05bjen692","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210140884","https://openalex.org/I4210149717"]},{"id":"https://openalex.org/I880747138","display_name":"Science Applications International Corporation (United States)","ror":"https://ror.org/00zv91802","country_code":"US","type":"company","lineage":["https://openalex.org/I880747138"]}],"countries":["IL","US"],"is_corresponding":false,"raw_author_name":"R. Nussinov","raw_affiliation_strings":["Sackler Inst. of Molecular Medicine, Sackler Faculty of Medicine, Tel Aviv University, Tel Aviv 69978, Israel and","Nanobiology Program, NCI-Frederick, Building 469, Room 151, Frederick, MD 21702, USA","Basic Research Program, SAIC-Frederick, Center for Cancer Research,"],"affiliations":[{"raw_affiliation_string":"Sackler Inst. of Molecular Medicine, Sackler Faculty of Medicine, Tel Aviv University, Tel Aviv 69978, Israel and","institution_ids":["https://openalex.org/I16391192"]},{"raw_affiliation_string":"Nanobiology Program, NCI-Frederick, Building 469, Room 151, Frederick, MD 21702, USA","institution_ids":[]},{"raw_affiliation_string":"Basic Research Program, SAIC-Frederick, Center for Cancer Research,","institution_ids":["https://openalex.org/I880747138","https://openalex.org/I4210149717"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5030975599","display_name":"Haim J. Wolfson","orcid":"https://orcid.org/0000-0002-7600-2702"},"institutions":[{"id":"https://openalex.org/I16391192","display_name":"Tel Aviv University","ror":"https://ror.org/04mhzgx49","country_code":"IL","type":"education","lineage":["https://openalex.org/I16391192"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"H. J. Wolfson","raw_affiliation_strings":["School of Computer Science, Raymond and Beverly Sackler Faculty of Exact Sciences, Tel Aviv University, Tel Aviv 69978, Israel,"],"affiliations":[{"raw_affiliation_string":"School of Computer Science, Raymond and Beverly Sackler Faculty of Exact Sciences, Tel Aviv University, Tel Aviv 69978, Israel,","institution_ids":["https://openalex.org/I16391192"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5032369751"],"corresponding_institution_ids":["https://openalex.org/I16391192","https://openalex.org/I4210107917"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":1.771,"has_fulltext":true,"cited_by_count":48,"citation_normalized_percentile":{"value":0.8364834,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"34","issue":"Web Server","first_page":"W412","last_page":"W415"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.953698992729187},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.5201271176338196},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.48755496740341187},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4235718846321106},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.3280631899833679},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.321861207485199},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.31709742546081543},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.1283802092075348},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.10805612802505493}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.953698992729187},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.5201271176338196},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.48755496740341187},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4235718846321106},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.3280631899833679},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.321861207485199},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.31709742546081543},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1283802092075348},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.10805612802505493}],"mesh":[{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1093/nar/gkl312","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkl312","pdf_url":"https://academic.oup.com/nar/article-pdf/34/suppl_2/W412/7623685/gkl312.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:16845038","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/16845038","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:europepmc.org:1341257","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/1538835","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:1538835","is_oa":true,"landing_page_url":"http://doi.org/10.1093/nar/gkl312","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.275.8784","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.275.8784","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ftp://ftp.ncbi.nlm.nih.gov/pub/pmc/76/51/Nucleic_Acids_Res_2006_Jul_1_34(Web_Server_issue)_W412-W415.tar.gz","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.324.4314","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.324.4314","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/content/34/suppl_2/W412.full-text-lowres.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.99.2886","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.99.2886","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/cgi/screenpdf/34/suppl_2/W412.pdf","raw_type":"text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkl312","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkl312","pdf_url":"https://academic.oup.com/nar/article-pdf/34/suppl_2/W412/7623685/gkl312.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3277247684","display_name":null,"funder_award_id":"N01-CO-12400","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3736099027","display_name":null,"funder_award_id":"281/05","funder_id":"https://openalex.org/F4320322252","funder_display_name":"Israel Science Foundation"},{"id":"https://openalex.org/G4705127230","display_name":null,"funder_award_id":"1-CO-12400","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6977636623","display_name":null,"funder_award_id":"1-CO-12400","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G7504989611","display_name":null,"funder_award_id":"N01-CO-12400","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"}],"funders":[{"id":"https://openalex.org/F4320322252","display_name":"Israel Science Foundation","ror":"https://ror.org/04sazxf24"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2119916585.pdf","grobid_xml":"https://content.openalex.org/works/W2119916585.grobid-xml"},"referenced_works_count":27,"referenced_works":["https://openalex.org/W255996521","https://openalex.org/W1542426682","https://openalex.org/W1608341719","https://openalex.org/W1851262865","https://openalex.org/W1980410097","https://openalex.org/W1980722147","https://openalex.org/W1982218430","https://openalex.org/W2009626626","https://openalex.org/W2026258231","https://openalex.org/W2032174048","https://openalex.org/W2036456126","https://openalex.org/W2047683652","https://openalex.org/W2073865971","https://openalex.org/W2090007205","https://openalex.org/W2091705944","https://openalex.org/W2108403284","https://openalex.org/W2120418017","https://openalex.org/W2122377457","https://openalex.org/W2130479394","https://openalex.org/W2132919646","https://openalex.org/W2133137475","https://openalex.org/W2134664665","https://openalex.org/W2146357275","https://openalex.org/W2158073100","https://openalex.org/W2161968806","https://openalex.org/W2165348150","https://openalex.org/W2169751581"],"related_works":["https://openalex.org/W2065457896","https://openalex.org/W3173234801","https://openalex.org/W2167984027","https://openalex.org/W3021302227","https://openalex.org/W10630519","https://openalex.org/W1919377569","https://openalex.org/W3144288563","https://openalex.org/W3123907821","https://openalex.org/W2147993839","https://openalex.org/W2382319620"],"abstract_inverted_index":{"RNA":[0,33,79,161],"molecules":[1],"with":[2,124,137,172],"common":[3,18,97,117],"structural":[4],"features":[5],"may":[6],"share":[7],"similar":[8],"functional":[9],"properties.":[10],"Structural":[11],"comparison":[12,157],"of":[13,17,75,86,106,109,129,158],"RNAs":[14],"and":[15,80,91,104,126,149],"detection":[16],"substructures":[19,118],"is,":[20],"thus,":[21],"a":[22,37,63,69,84,94,173],"highly":[23,147],"important":[24],"task.":[25],"Nevertheless,":[26],"the":[27,32,45,107,110,113,160,164],"current":[28],"available":[29],"tools":[30],"in":[31,163],"community":[34],"provide":[35],"only":[36],"partial":[38],"solution,":[39],"since":[40],"they":[41],"either":[42],"work":[43],"at":[44,138,181],"2D":[46],"level":[47],"or":[48,54],"are":[49,178],"suitable":[50],"for":[51,71,93,176],"detecting":[52],"predefined":[53],"local":[55,135],"contiguous":[56],"tertiary":[57,73],"motifs":[58,136],"only.":[59],"Here,":[60],"we":[61],"describe":[62],"web":[64,169],"server":[65,170],"built":[66],"around":[67],"ARTS,":[68],"method":[70,145],"aligning":[72],"structures":[74,90,162],"nucleic":[76,88],"acids":[77],"(both":[78],"DNA).":[81],"ARTS":[82],"receives":[83],"pair":[85],"3D":[87,103],"acid":[89],"searches":[92],"priori":[95],"unknown":[96],"substructures.":[98],"The":[99,115,144,168],"search":[100],"is":[101,146],"truly":[102],"irrespective":[105],"order":[108],"nucleotides":[111,130],"on":[112],"chain.":[114],"identified":[116],"can":[119],"be":[120],"large":[121],"global":[122],"folds":[123],"hundreds":[125],"even":[127],"thousands":[128],"as":[131,133],"well":[132],"small":[134],"least":[139],"two":[140],"successive":[141],"base":[142],"pairs.":[143],"efficient":[148],"has":[150],"been":[151],"used":[152],"to":[153],"conduct":[154],"an":[155],"all-against-all":[156],"all":[159],"Protein":[165],"Data":[166],"Bank.":[167],"together":[171],"software":[174],"package":[175],"download":[177],"freely":[179],"accessible":[180],"http://bioinfo3d.cs.tau.ac.il/ARTS.":[182]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":3},{"year":2022,"cited_by_count":3},{"year":2019,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":2}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
