{"id":"https://openalex.org/W2141519063","doi":"https://doi.org/10.1093/nar/gkl296","title":"POXO: a web-enabled tool series to discover transcription factor binding sites","display_name":"POXO: a web-enabled tool series to discover transcription factor binding sites","publication_year":2006,"publication_date":"2006-07-01","ids":{"openalex":"https://openalex.org/W2141519063","doi":"https://doi.org/10.1093/nar/gkl296","mag":"2141519063","pmid":"https://pubmed.ncbi.nlm.nih.gov/16845065"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkl296","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkl296","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/nar/gkl296","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5000875080","display_name":"Matti Kankainen","orcid":"https://orcid.org/0000-0002-4714-9481"},"institutions":[{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]},{"id":"https://openalex.org/I2800229700","display_name":"Helsinki Institute of Physics","ror":"https://ror.org/01x2x1522","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I2800229700","https://openalex.org/I63548447","https://openalex.org/I94722563","https://openalex.org/I9927081"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"M. Kankainen","raw_affiliation_strings":["Institute of Biotechnology, University of Helsinki, PO Box 56 (Viikinkaari 5), FIN-00014 Helsinki, Finland","Institute of Biotechnology, University of Helsinki, PO Box 56 (Viikinkaari 5), FIN-00014, Helsinki, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Biotechnology, University of Helsinki, PO Box 56 (Viikinkaari 5), FIN-00014 Helsinki, Finland","institution_ids":["https://openalex.org/I133731052","https://openalex.org/I2800229700"]},{"raw_affiliation_string":"Institute of Biotechnology, University of Helsinki, PO Box 56 (Viikinkaari 5), FIN-00014, Helsinki, Finland","institution_ids":["https://openalex.org/I133731052","https://openalex.org/I2800229700"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070244169","display_name":"Petri Pehkonen","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"P. Pehkonen","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090818169","display_name":"P. Rosenstom","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"P. Rosenstom","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030987435","display_name":"Petri T\u00f6r\u00f6nen","orcid":"https://orcid.org/0000-0003-4764-9790"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"P. Toronen","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063000955","display_name":"Garry Wong","orcid":"https://orcid.org/0000-0003-4566-9958"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"G. Wong","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5064498279","display_name":"Liisa Holm","orcid":"https://orcid.org/0000-0002-7807-2966"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"L. Holm","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":0.6353,"has_fulltext":false,"cited_by_count":11,"citation_normalized_percentile":{"value":0.6653324,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"34","issue":"Web Server","first_page":"W534","last_page":"W540"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9941999912261963,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9933000206947327,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.8356685638427734},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.6994988322257996},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6904584169387817},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.5995643138885498},{"id":"https://openalex.org/keywords/transcription-factor","display_name":"Transcription factor","score":0.5729784965515137},{"id":"https://openalex.org/keywords/dna-binding-site","display_name":"DNA binding site","score":0.5301165580749512},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5159140825271606},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.5101338028907776},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3704615831375122},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.3537028431892395},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.19049394130706787},{"id":"https://openalex.org/keywords/promoter","display_name":"Promoter","score":0.14960524439811707}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8356685638427734},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.6994988322257996},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6904584169387817},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.5995643138885498},{"id":"https://openalex.org/C86339819","wikidata":"https://www.wikidata.org/wiki/Q407384","display_name":"Transcription factor","level":3,"score":0.5729784965515137},{"id":"https://openalex.org/C3662595","wikidata":"https://www.wikidata.org/wiki/Q5205743","display_name":"DNA binding site","level":5,"score":0.5301165580749512},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5159140825271606},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5101338028907776},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3704615831375122},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.3537028431892395},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.19049394130706787},{"id":"https://openalex.org/C101762097","wikidata":"https://www.wikidata.org/wiki/Q224093","display_name":"Promoter","level":4,"score":0.14960524439811707},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D050436","descriptor_name":"Regulatory Elements, Transcriptional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D050436","descriptor_name":"Regulatory Elements, Transcriptional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D050436","descriptor_name":"Regulatory Elements, Transcriptional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":7,"locations":[{"id":"doi:10.1093/nar/gkl296","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkl296","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:16845065","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/16845065","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.276.6946","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.276.6946","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ftp://ftp.ncbi.nlm.nih.gov/pub/pmc/0e/58/Nucleic_Acids_Res_2006_Jul_1_34(Web_Server_issue)_W534-W540.tar.gz","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.594.2629","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.594.2629","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/content/34/suppl_2/W534.full-text-lowres.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.892.2972","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.892.2972","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/content/34/suppl_2/W534.full.pdf","raw_type":"text"},{"id":"pmh:oai:europepmc.org:338327","is_oa":false,"landing_page_url":"http://europepmc.org/pmc/articles/PMC1538773","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:1538773","is_oa":true,"landing_page_url":"http://doi.org/10.1093/nar/gkl296","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkl296","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkl296","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320321726","display_name":"Suomen Kulttuurirahasto","ror":"https://ror.org/027xav248"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":32,"referenced_works":["https://openalex.org/W1884528635","https://openalex.org/W1902027874","https://openalex.org/W1966833356","https://openalex.org/W2003867149","https://openalex.org/W2003967338","https://openalex.org/W2025289680","https://openalex.org/W2032231928","https://openalex.org/W2039286232","https://openalex.org/W2044565924","https://openalex.org/W2055043387","https://openalex.org/W2085027598","https://openalex.org/W2085380917","https://openalex.org/W2087892194","https://openalex.org/W2096603500","https://openalex.org/W2097396311","https://openalex.org/W2100945610","https://openalex.org/W2102992354","https://openalex.org/W2103017472","https://openalex.org/W2111473801","https://openalex.org/W2113833510","https://openalex.org/W2116027790","https://openalex.org/W2121159098","https://openalex.org/W2124338693","https://openalex.org/W2131386482","https://openalex.org/W2133147430","https://openalex.org/W2135030836","https://openalex.org/W2150431323","https://openalex.org/W2158314946","https://openalex.org/W2158962723","https://openalex.org/W2160973013","https://openalex.org/W2168157737","https://openalex.org/W4210580032"],"related_works":["https://openalex.org/W2009966535","https://openalex.org/W2112717966","https://openalex.org/W2145627818","https://openalex.org/W2126468786","https://openalex.org/W1984003821","https://openalex.org/W2949910456","https://openalex.org/W2118212175","https://openalex.org/W2101459357","https://openalex.org/W4300054167","https://openalex.org/W2059487265"],"abstract_inverted_index":{"We":[0],"present":[1],"POXO,":[2],"a":[3,62],"comprehensive":[4],"tool":[5],"series":[6],"to":[7,39,97,121,137],"discover":[8,122],"transcription":[9,189],"factor":[10],"binding":[11],"sites":[12],"from":[13,43,126,174],"co-expressed":[14,65],"genes":[15,66,99,143],"(www.bioinfo.biocenter.helsinki.fi/poxo).":[16],"POXO":[17,54,167,182],"manages":[18],"tasks":[19],"such":[20],"as":[21],"functional":[22,74],"evaluation":[23],"and":[24,32,82,161,187],"grouping":[25],"of":[26,53,64,76,130,166],"genes,":[27],"sequence":[28],"retrieval,":[29],"pattern":[30,33],"discovery":[31],"verification.":[34],"It":[35],"also":[36,94],"allows":[37],"users":[38],"tailor":[40],"analytical":[41],"pipelines":[42],"these":[44],"tools,":[45],"with":[46,87],"single":[47],"mouse":[48],"clicks.":[49],"One":[50],"typical":[51],"pipeline":[52,118],"begins":[55],"by":[56,146,170],"examining":[57],"the":[58,73,77,88,111,117,127,131,139,142],"biological":[59,106],"functions":[60,84],"that":[61,141],"set":[63,79],"are":[67,85,108,144,152],"involved":[68],"in.":[69],"In":[70,179],"this":[71,180],"examination,":[72],"coherence":[75],"gene":[78,89,133,185],"is":[80,119,168],"evaluated":[81],"representative":[83],"associated":[86],"set.":[90],"This":[91,135],"examination":[92],"can":[93,156],"be":[95,158,162],"used":[96],"group":[98],"into":[100],"functionally":[101],"similar":[102,154],"subsets,":[103],"if":[104],"several":[105],"processes":[107],"affected":[109],"in":[110,116],"experiment.":[112],"The":[113,164],"next":[114],"step":[115],"then":[120,157],"over-represented":[123,150],"nucleotide":[124],"patterns":[125,151],"upstream":[128],"sequences":[129],"selected":[132],"sets.":[134],"enables":[136],"investigate":[138],"possibility":[140],"co-regulated":[145],"common":[147],"cis-elements.":[148],"If":[149],"found,":[153],"ones":[155],"clustered":[159],"together":[160],"verified.":[163],"performance":[165],"demonstrated":[169],"analysing":[171],"expression":[172],"data":[173],"pathogen":[175],"treated":[176],"Arabidopsis":[177],"thaliana.":[178],"example,":[181],"detected":[183],"activated":[184],"sets":[186],"suggested":[188],"factors":[190],"responsible":[191],"for":[192],"their":[193],"regulation.":[194]},"counts_by_year":[{"year":2017,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
