{"id":"https://openalex.org/W2007674561","doi":"https://doi.org/10.1093/nar/gkl283","title":"TACT: Transcriptome Auto-annotation Conducting Tool of H-InvDB","display_name":"TACT: Transcriptome Auto-annotation Conducting Tool of H-InvDB","publication_year":2006,"publication_date":"2006-07-01","ids":{"openalex":"https://openalex.org/W2007674561","doi":"https://doi.org/10.1093/nar/gkl283","mag":"2007674561","pmid":"https://pubmed.ncbi.nlm.nih.gov/16845023"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkl283","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkl283","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/nar/gkl283","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5052923598","display_name":"Chihiro Yamasaki","orcid":null},"institutions":[{"id":"https://openalex.org/I4210104082","display_name":"Japan Biological Informatics Consortium","ror":"https://ror.org/01astg473","country_code":"JP","type":"nonprofit","lineage":["https://openalex.org/I4210104082"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"C. Yamasaki","raw_affiliation_strings":["Integrated Database Group, Japan Biological Information Research Center, Japan Biological Informatics Consortium, AIST Waterfront Bio-IT Research Building, 2-42 Aomi, Koto-ku, Tokyo 135-0064, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Integrated Database Group, Japan Biological Information Research Center, Japan Biological Informatics Consortium, AIST Waterfront Bio-IT Research Building, 2-42 Aomi, Koto-ku, Tokyo 135-0064, Japan","institution_ids":["https://openalex.org/I4210104082"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027545207","display_name":"Hiroyuki Kawashima","orcid":"https://orcid.org/0000-0001-9511-9773"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"H. Kawashima","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108098466","display_name":"Fusano Todokoro","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"F. Todokoro","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034627151","display_name":"Y. Imamizu","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Y. Imamizu","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5114859569","display_name":"Makoto Ogawa","orcid":"https://orcid.org/0000-0001-6401-5998"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"M. Ogawa","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113664751","display_name":"Motohiko Tanino","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"M. Tanino","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075056835","display_name":"Takeshi Itoh","orcid":"https://orcid.org/0000-0002-6291-4233"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"T. Itoh","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016971481","display_name":"T. Gojobori","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"T. Gojobori","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5023402430","display_name":"Tadashi Imanishi","orcid":"https://orcid.org/0000-0002-1182-9127"},"institutions":[{"id":"https://openalex.org/I73613424","display_name":"National Institute of Advanced Industrial Science and Technology","ror":"https://ror.org/01703db54","country_code":"JP","type":"government","lineage":["https://openalex.org/I73613424"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"T. Imanishi","raw_affiliation_strings":["National Institute of Advanced Industrial Science and Techno"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Institute of Advanced Industrial Science and Techno","institution_ids":["https://openalex.org/I73613424"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5052923598"],"corresponding_institution_ids":["https://openalex.org/I4210104082"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":0.2727,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.56913933,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":96},"biblio":{"volume":"34","issue":"Web Server","first_page":"W345","last_page":"W349"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/tact","display_name":"Tact","score":0.9600152373313904},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.8678639531135559},{"id":"https://openalex.org/keywords/uniprot","display_name":"UniProt","score":0.703075647354126},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6090396642684937},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5061725974082947},{"id":"https://openalex.org/keywords/orfs","display_name":"ORFS","score":0.45057186484336853},{"id":"https://openalex.org/keywords/refseq","display_name":"RefSeq","score":0.43142229318618774},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3460443615913391},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.32295310497283936},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.21160560846328735},{"id":"https://openalex.org/keywords/open-reading-frame","display_name":"Open reading frame","score":0.18128246068954468},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.16348719596862793},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.135184645652771}],"concepts":[{"id":"https://openalex.org/C2778833722","wikidata":"https://www.wikidata.org/wiki/Q28457372","display_name":"Tact","level":2,"score":0.9600152373313904},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.8678639531135559},{"id":"https://openalex.org/C202264299","wikidata":"https://www.wikidata.org/wiki/Q905695","display_name":"UniProt","level":3,"score":0.703075647354126},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6090396642684937},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5061725974082947},{"id":"https://openalex.org/C2780530800","wikidata":"https://www.wikidata.org/wiki/Q7072921","display_name":"ORFS","level":5,"score":0.45057186484336853},{"id":"https://openalex.org/C151810110","wikidata":"https://www.wikidata.org/wiki/Q7307074","display_name":"RefSeq","level":4,"score":0.43142229318618774},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3460443615913391},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.32295310497283936},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.21160560846328735},{"id":"https://openalex.org/C47289529","wikidata":"https://www.wikidata.org/wiki/Q908550","display_name":"Open reading frame","level":4,"score":0.18128246068954468},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.16348719596862793},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.135184645652771},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.0},{"id":"https://openalex.org/C542102704","wikidata":"https://www.wikidata.org/wiki/Q183257","display_name":"Psychotherapist","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016366","descriptor_name":"Open Reading Frames","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016366","descriptor_name":"Open Reading Frames","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016366","descriptor_name":"Open Reading Frames","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017421","descriptor_name":"Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017421","descriptor_name":"Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017421","descriptor_name":"Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018076","descriptor_name":"DNA, Complementary","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D018076","descriptor_name":"DNA, Complementary","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D018076","descriptor_name":"DNA, Complementary","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020224","descriptor_name":"Expressed Sequence Tags","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D020224","descriptor_name":"Expressed Sequence Tags","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D020224","descriptor_name":"Expressed Sequence Tags","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020816","descriptor_name":"Amino Acid Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020816","descriptor_name":"Amino Acid Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020816","descriptor_name":"Amino Acid Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1093/nar/gkl283","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkl283","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:16845023","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/16845023","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.581.78","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.581.78","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/content/34/suppl_2/W345.full-text-lowres.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.979.6717","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.979.6717","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/content/34/suppl_2/W345.full.pdf","raw_type":"text"},{"id":"pmh:oai:europepmc.org:338354","is_oa":false,"landing_page_url":"http://europepmc.org/pmc/articles/PMC1538819","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:1538819","is_oa":true,"landing_page_url":"http://doi.org/10.1093/nar/gkl283","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkl283","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkl283","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4699999988079071,"id":"https://metadata.un.org/sdg/17","display_name":"Partnerships for the goals"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":14,"referenced_works":["https://openalex.org/W1986234964","https://openalex.org/W2026726511","https://openalex.org/W2055043387","https://openalex.org/W2093535315","https://openalex.org/W2099275700","https://openalex.org/W2107335514","https://openalex.org/W2108222684","https://openalex.org/W2110182011","https://openalex.org/W2111295848","https://openalex.org/W2119195082","https://openalex.org/W2144905501","https://openalex.org/W2152180708","https://openalex.org/W2159633595","https://openalex.org/W2171047473"],"related_works":["https://openalex.org/W2149629850","https://openalex.org/W2102027645","https://openalex.org/W2109809956","https://openalex.org/W2107785922","https://openalex.org/W2083730226","https://openalex.org/W2408428275","https://openalex.org/W2068850418","https://openalex.org/W2035528219","https://openalex.org/W2116418175","https://openalex.org/W2402478170"],"abstract_inverted_index":{"Transcriptome":[0],"Auto-annotation":[1],"Conducting":[2],"Tool":[3],"(TACT)":[4],"is":[5,179,193,205],"a":[6,53,132],"newly":[7],"developed":[8,30],"web-based":[9],"automated":[10],"tool":[11],"for":[12,65,181],"conducting":[13],"functional":[14,26,127,139,156,182],"annotation":[15,70,128,157,183],"of":[16,21,38,94,123,155,188,201],"transcripts":[17,111,144,162],"by":[18,34,120],"the":[19,31,60,66,87,92,95,103,121,134,146,152,176,186,199],"integration":[20],"sequence":[22,46,82],"similarity":[23,39],"searches":[24],"and":[25,42,50,52,91,115,184,190,196],"motif":[27,55],"predictions.":[28],"We":[29],"TACT":[32,104,135,177,204],"system":[33,73,105,136,178],"integrating":[35],"two":[36],"kinds":[37],"searches,":[40],"FASTY":[41],"BLASTX,":[43],"against":[44],"protein":[45,96,191],"databases,":[47],"UniProtKB":[48],"(Swiss-Prot/TrEMBL)":[49],"RefSeq,":[51],"unified":[54],"prediction":[56,187],"program,":[57],"InterProScan,":[58],"into":[59],"ORF-prediction":[61],"pipeline":[62],"originally":[63],"designed":[64],"'H-Invitational'":[67],"human":[68,110,202],"transcriptome":[69],"project.":[71],"This":[72],"successively":[74],"applies":[75],"these":[76],"constituent":[77],"programs":[78],"to":[79,85,106,141,198],"an":[80],"mRNA":[81],"in":[83,113,129],"order":[84],"predict":[86],"most":[88],"plausible":[89],"ORF":[90],"function":[93],"encoded.":[97],"In":[98],"this":[99],"study,":[100],"we":[101],"applied":[102],"19":[107],"574":[108],"non-redundant":[109],"registered":[112],"H-InvDB":[114],"evaluated":[116],"its":[117],"predictive":[118],"power":[119],"degree":[122],"agreement":[124,154],"with":[125,158],"human-curated":[126],"H-InvDB.":[130],"As":[131],"result,":[133],"could":[137],"assign":[138],"description":[140],"12":[142],"559":[143],"(64.2%),":[145],"remainder":[147],"being":[148],"hypothetical":[149,165],"proteins.":[150],"Furthermore,":[151],"overall":[153],"H-InvDB,":[159],"including":[160],"those":[161],"annotated":[163],"as":[164],"proteins,":[166],"was":[167],"83.9%":[168],"(16":[169],"432/19":[170],"574).":[171],"These":[172],"results":[173,200],"show":[174],"that":[175,185],"useful":[180],"ORFs":[189],"functions":[192],"highly":[194],"accurate":[195],"close":[197],"curation.":[203],"freely":[206],"available":[207],"at":[208],"http://www.jbirc.aist.go.jp/tact/.":[209]},"counts_by_year":[{"year":2012,"cited_by_count":2}],"updated_date":"2026-06-15T08:34:33.830935","created_date":"2025-10-10T00:00:00"}
