{"id":"https://openalex.org/W2085399039","doi":"https://doi.org/10.1093/nar/gkl255","title":"jpHMM at GOBICS: a web server to detect genomic recombinations in HIV-1","display_name":"jpHMM at GOBICS: a web server to detect genomic recombinations in HIV-1","publication_year":2006,"publication_date":"2006-07-01","ids":{"openalex":"https://openalex.org/W2085399039","doi":"https://doi.org/10.1093/nar/gkl255","mag":"2085399039","pmid":"https://pubmed.ncbi.nlm.nih.gov/16845050"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkl255","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkl255","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/nar/gkl255","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100447315","display_name":"Ming Zhang","orcid":"https://orcid.org/0000-0003-1175-4636"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"M. Zhang","raw_affiliation_strings":["Institut f\u00fcr Mikrobiologie und Genetik, Abteilung Bioinformatik, Goldschmidtstrasse 1, 37077 G\u00f6ttingen, Germany"],"affiliations":[{"raw_affiliation_string":"Institut f\u00fcr Mikrobiologie und Genetik, Abteilung Bioinformatik, Goldschmidtstrasse 1, 37077 G\u00f6ttingen, Germany","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015651328","display_name":"Anne-Kathrin Schultz","orcid":"https://orcid.org/0000-0002-0963-4275"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"A.-K. Schultz","raw_affiliation_strings":["Institut fu \u00a8r Mikrobiologie und Genetik, Abteilung Bioinformatik, Goldschmidtstra\u00dfe 1, 37077 Go \u00a8ttingen, Germany,"],"affiliations":[{"raw_affiliation_string":"Institut fu \u00a8r Mikrobiologie und Genetik, Abteilung Bioinformatik, Goldschmidtstra\u00dfe 1, 37077 Go \u00a8ttingen, Germany,","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065051359","display_name":"C.E. Calef","orcid":null},"institutions":[{"id":"https://openalex.org/I1343871089","display_name":"Los Alamos National Laboratory","ror":"https://ror.org/01e41cf67","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I1343871089","https://openalex.org/I198811213","https://openalex.org/I4210120050"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"C. Calef","raw_affiliation_strings":["Theoretical Division, Los Alamos National Laboratory, Los Alamos, NM 87545, USA and"],"affiliations":[{"raw_affiliation_string":"Theoretical Division, Los Alamos National Laboratory, Los Alamos, NM 87545, USA and","institution_ids":["https://openalex.org/I1343871089"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045816128","display_name":"Carla Kuiken","orcid":null},"institutions":[{"id":"https://openalex.org/I1343871089","display_name":"Los Alamos National Laboratory","ror":"https://ror.org/01e41cf67","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I1343871089","https://openalex.org/I198811213","https://openalex.org/I4210120050"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"C. Kuiken","raw_affiliation_strings":["Theoretical Division, Los Alamos National Laboratory, Los Alamos, NM 87545, USA and"],"affiliations":[{"raw_affiliation_string":"Theoretical Division, Los Alamos National Laboratory, Los Alamos, NM 87545, USA and","institution_ids":["https://openalex.org/I1343871089"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023859958","display_name":"Thomas Leitner","orcid":"https://orcid.org/0000-0001-8160-2588"},"institutions":[{"id":"https://openalex.org/I1343871089","display_name":"Los Alamos National Laboratory","ror":"https://ror.org/01e41cf67","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I1343871089","https://openalex.org/I198811213","https://openalex.org/I4210120050"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"T. Leitner","raw_affiliation_strings":["Theoretical Division, Los Alamos National Laboratory, Los Alamos, NM 87545, USA and"],"affiliations":[{"raw_affiliation_string":"Theoretical Division, Los Alamos National Laboratory, Los Alamos, NM 87545, USA and","institution_ids":["https://openalex.org/I1343871089"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022985881","display_name":"Bette Korber","orcid":"https://orcid.org/0000-0002-2026-5757"},"institutions":[{"id":"https://openalex.org/I1308548392","display_name":"Santa Fe Institute","ror":"https://ror.org/01arysc35","country_code":"US","type":"funder","lineage":["https://openalex.org/I1308548392"]},{"id":"https://openalex.org/I1343871089","display_name":"Los Alamos National Laboratory","ror":"https://ror.org/01e41cf67","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I1343871089","https://openalex.org/I198811213","https://openalex.org/I4210120050"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"B. Korber","raw_affiliation_strings":["The Santa Fe Institute, Santa Fe, NM 87501, USA","Theoretical Division, Los Alamos National Laboratory, Los Alamos, NM 87545, USA and"],"affiliations":[{"raw_affiliation_string":"The Santa Fe Institute, Santa Fe, NM 87501, USA","institution_ids":["https://openalex.org/I1308548392"]},{"raw_affiliation_string":"Theoretical Division, Los Alamos National Laboratory, Los Alamos, NM 87545, USA and","institution_ids":["https://openalex.org/I1343871089"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024220352","display_name":"Burkhard Morgenstern","orcid":"https://orcid.org/0000-0002-7431-2862"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"B. Morgenstern","raw_affiliation_strings":["Institut fu \u00a8r Mikrobiologie und Genetik, Abteilung Bioinformatik, Goldschmidtstra\u00dfe 1, 37077 Go \u00a8ttingen, Germany,"],"affiliations":[{"raw_affiliation_string":"Institut fu \u00a8r Mikrobiologie und Genetik, Abteilung Bioinformatik, Goldschmidtstra\u00dfe 1, 37077 Go \u00a8ttingen, Germany,","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5025051195","display_name":"Mario Stanke","orcid":"https://orcid.org/0000-0001-8696-0384"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"M. Stanke","raw_affiliation_strings":["Institut fu \u00a8r Mikrobiologie und Genetik, Abteilung Bioinformatik, Goldschmidtstra\u00dfe 1, 37077 Go \u00a8ttingen, Germany,"],"affiliations":[{"raw_affiliation_string":"Institut fu \u00a8r Mikrobiologie und Genetik, Abteilung Bioinformatik, Goldschmidtstra\u00dfe 1, 37077 Go \u00a8ttingen, Germany,","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5100447315"],"corresponding_institution_ids":[],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":1.4985,"has_fulltext":true,"cited_by_count":60,"citation_normalized_percentile":{"value":0.80753674,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"34","issue":"Web Server","first_page":"W463","last_page":"W465"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10112","display_name":"HIV Research and Treatment","score":0.9940000176429749,"subfield":{"id":"https://openalex.org/subfields/2406","display_name":"Virology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10141","display_name":"Probiotics and Fermented Foods","score":0.982699990272522,"subfield":{"id":"https://openalex.org/subfields/1106","display_name":"Food Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.8718289136886597},{"id":"https://openalex.org/keywords/subtyping","display_name":"Subtyping","score":0.6285483837127686},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5799568891525269},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.5384718179702759},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.5269076228141785},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.5152338147163391},{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.5151233077049255},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.49737146496772766},{"id":"https://openalex.org/keywords/whole-genome-sequencing","display_name":"Whole genome sequencing","score":0.45549827814102173},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.19270634651184082},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.15368303656578064},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.13519906997680664},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.11091107130050659},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.11062699556350708}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8718289136886597},{"id":"https://openalex.org/C83852419","wikidata":"https://www.wikidata.org/wiki/Q2713292","display_name":"Subtyping","level":2,"score":0.6285483837127686},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5799568891525269},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5384718179702759},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.5269076228141785},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.5152338147163391},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.5151233077049255},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.49737146496772766},{"id":"https://openalex.org/C24432333","wikidata":"https://www.wikidata.org/wiki/Q2068526","display_name":"Whole genome sequencing","level":4,"score":0.45549827814102173},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.19270634651184082},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.15368303656578064},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.13519906997680664},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.11091107130050659},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.11062699556350708}],"mesh":[{"descriptor_ui":"D008390","descriptor_name":"Markov Chains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008390","descriptor_name":"Markov Chains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008390","descriptor_name":"Markov Chains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008390","descriptor_name":"Markov Chains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011995","descriptor_name":"Recombination, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011995","descriptor_name":"Recombination, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011995","descriptor_name":"Recombination, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011995","descriptor_name":"Recombination, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1093/nar/gkl255","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkl255","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:16845050","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/16845050","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:osti.gov:1625403","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/1625403","pdf_url":"https://www.osti.gov/servlets/purl/1625403","source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:europepmc.org:1341254","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/1538796","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:goescholar:1/4125","is_oa":true,"landing_page_url":"http://resolver.sub.uni-goettingen.de/purl?goescholar/4125","pdf_url":null,"source":{"id":"https://openalex.org/S4306401634","display_name":"GoeScholar  The Publication Server of the Georg-August-Universit\u00e4t G\u00f6ttingen (Georg-August-Universit\u00e4t G\u00f6ttingen)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210122495","host_organization_name":"Asklepios Klinik St. Georg","host_organization_lineage":["https://openalex.org/I4210122495"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"journalArticle"},{"id":"pmh:oai:publications.goettingen-research-online.de:2/60182","is_oa":true,"landing_page_url":"https://resolver.sub.uni-goettingen.de/purl?gro-2/60182","pdf_url":null,"source":{"id":"https://openalex.org/S4306401634","display_name":"GoeScholar  The Publication Server of the Georg-August-Universit\u00e4t G\u00f6ttingen (Georg-August-Universit\u00e4t G\u00f6ttingen)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210122495","host_organization_name":"Asklepios Klinik St. Georg","host_organization_lineage":["https://openalex.org/I4210122495"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"journal_article"},{"id":"pmh:oai:pubmedcentral.nih.gov:1538796","is_oa":true,"landing_page_url":"http://doi.org/10.1093/nar/gkl255","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkl255","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkl255","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.8399999737739563}],"awards":[{"id":"https://openalex.org/G4460594324","display_name":"Verbundprojekt D-Grid_MediGRID: MediGRID - Ressourcenfusion f\u00fcr die Forschung in Medizin und Lebenswissenschaften - ANWENDUNGSMODUL: BIOMEDIZINISCHE INFORMATIK","funder_award_id":"01AK803G","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"}],"funders":[{"id":"https://openalex.org/F4320306084","display_name":"U.S. Department of Energy","ror":"https://ror.org/01bj3aw27"},{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"},{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":16,"referenced_works":["https://openalex.org/W1773019931","https://openalex.org/W1992471261","https://openalex.org/W2007735554","https://openalex.org/W2087757756","https://openalex.org/W2102122585","https://openalex.org/W2129448726","https://openalex.org/W2135350300","https://openalex.org/W2140136392","https://openalex.org/W2143334889","https://openalex.org/W2144141060","https://openalex.org/W2158666214","https://openalex.org/W2163400707","https://openalex.org/W2916516961","https://openalex.org/W2916691697","https://openalex.org/W3214380909","https://openalex.org/W4245668478"],"related_works":["https://openalex.org/W2396009657","https://openalex.org/W2799110842","https://openalex.org/W3032826521","https://openalex.org/W2391332606","https://openalex.org/W1462775415","https://openalex.org/W4229853287","https://openalex.org/W1535483699","https://openalex.org/W2008549446","https://openalex.org/W2333832190","https://openalex.org/W2068445477"],"abstract_inverted_index":{"Detecting":[0],"recombinations":[1],"in":[2,33],"the":[3,51,79],"genome":[4,70],"sequence":[5,71,81],"of":[6,30,50,78,85],"human":[7],"immunodeficiency":[8],"virus":[9],"(HIV-1)":[10],"is":[11,37,65,92],"crucial":[12],"for":[13,17,26,62],"epidemiological":[14],"studies":[15],"and":[16,28,87],"vaccine":[18],"development.":[19],"Herein,":[20],"we":[21],"present":[22],"a":[23,40,47,66],"web":[24],"server":[25,64],"subtyping":[27],"localization":[29],"phylogenetic":[31,89],"breakpoints":[32],"HIV-1.":[34],"Our":[35],"software":[36],"based":[38],"on":[39],"jumping":[41],"profile":[42],"Hidden":[43],"Markov":[44],"Model":[45],"(jpHMM),":[46],"probabilistic":[48],"generalization":[49],"jumping-alignment":[52],"approach":[53],"proposed":[54],"by":[55],"Spang":[56],"et":[57],"al.":[58],"The":[59],"input":[60,80],"data":[61],"our":[63,74],"partial":[67],"or":[68],"complete":[69],"from":[72],"HIV-1;":[73],"tool":[75],"assigns":[76],"regions":[77],"to":[82],"known":[83],"subtypes":[84],"HIV-1":[86],"predicts":[88],"breakpoints.":[90],"jpHMM":[91],"available":[93],"online":[94],"at":[95],"http://jphmm.gobics.de/.":[96]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2024,"cited_by_count":2},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":4},{"year":2012,"cited_by_count":7}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
