{"id":"https://openalex.org/W2029900321","doi":"https://doi.org/10.1093/nar/gkl245","title":"MODi : a powerful and convenient web server for identifying multiple post-translational peptide modifications from tandem mass spectra","display_name":"MODi : a powerful and convenient web server for identifying multiple post-translational peptide modifications from tandem mass spectra","publication_year":2006,"publication_date":"2006-07-01","ids":{"openalex":"https://openalex.org/W2029900321","doi":"https://doi.org/10.1093/nar/gkl245","mag":"2029900321","pmid":"https://pubmed.ncbi.nlm.nih.gov/16845006"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkl245","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkl245","pdf_url":"https://academic.oup.com/nar/article-pdf/34/suppl_2/W258/7623395/gkl245.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/34/suppl_2/W258/7623395/gkl245.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100451556","display_name":"Seunghwan Kim","orcid":"https://orcid.org/0000-0002-0563-3902"},"institutions":[{"id":"https://openalex.org/I4575257","display_name":"Hanyang University","ror":"https://ror.org/046865y68","country_code":"KR","type":"education","lineage":["https://openalex.org/I4575257"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"S. Kim","raw_affiliation_strings":["Research Center for Computer Technology, Hanyang University, Seoul, 133-791, Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Research Center for Computer Technology, Hanyang University, Seoul, 133-791, Korea","institution_ids":["https://openalex.org/I4575257"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088522308","display_name":"Seungjin Na","orcid":"https://orcid.org/0000-0002-5159-2048"},"institutions":[{"id":"https://openalex.org/I124633538","display_name":"University of Seoul","ror":"https://ror.org/05en5nh73","country_code":"KR","type":"education","lineage":["https://openalex.org/I124633538"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"S. Na","raw_affiliation_strings":["Department of Mechanical and Information Engineering, University of Seoul, Seoul 130-743, Korea,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mechanical and Information Engineering, University of Seoul, Seoul 130-743, Korea,","institution_ids":["https://openalex.org/I124633538"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111220079","display_name":"J.W. Sim","orcid":null},"institutions":[{"id":"https://openalex.org/I139264467","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542","country_code":"KR","type":"education","lineage":["https://openalex.org/I139264467"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"J. W. Sim","raw_affiliation_strings":["School of Computer Science and Engineering, Seoul National University, Seoul 151-742, Korea,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Seoul National University, Seoul 151-742, Korea,","institution_ids":["https://openalex.org/I139264467"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103210762","display_name":"Hai Jin Park","orcid":"https://orcid.org/0000-0003-2523-7023"},"institutions":[{"id":"https://openalex.org/I4575257","display_name":"Hanyang University","ror":"https://ror.org/046865y68","country_code":"KR","type":"education","lineage":["https://openalex.org/I4575257"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"H. Park","raw_affiliation_strings":["College of Information and Communications, Hanyang University, Seoul 133-791, Korea,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Information and Communications, Hanyang University, Seoul 133-791, Korea,","institution_ids":["https://openalex.org/I4575257"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103021684","display_name":"Jaeho Jeong","orcid":"https://orcid.org/0000-0002-9551-7154"},"institutions":[{"id":"https://openalex.org/I138925566","display_name":"Ewha Womans University","ror":"https://ror.org/053fp5c05","country_code":"KR","type":"education","lineage":["https://openalex.org/I138925566"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"J. Jeong","raw_affiliation_strings":["Center for Cell Signaling Research, Division of Molecular Life Sciences and College of Pharmacy, Ewha Womans University, Seoul 120-750, Korea,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Cell Signaling Research, Division of Molecular Life Sciences and College of Pharmacy, Ewha Womans University, Seoul 120-750, Korea,","institution_ids":["https://openalex.org/I138925566"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075026236","display_name":"H. Kim","orcid":null},"institutions":[{"id":"https://openalex.org/I58716616","display_name":"Korea Institute of Science and Technology","ror":"https://ror.org/05kzfa883","country_code":"KR","type":"facility","lineage":["https://openalex.org/I27494661","https://openalex.org/I2801339556","https://openalex.org/I2801339556","https://openalex.org/I4210144908","https://openalex.org/I4387152098","https://openalex.org/I4387152098","https://openalex.org/I58716616"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"H. Kim","raw_affiliation_strings":["Functional Proteomics Center, Korea Institute of Science and Technology, Seoul 136-791, Korea and"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Functional Proteomics Center, Korea Institute of Science and Technology, Seoul 136-791, Korea and","institution_ids":["https://openalex.org/I58716616"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101658890","display_name":"Young Ho Seo","orcid":"https://orcid.org/0000-0002-2268-8761"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Y. Seo","raw_affiliation_strings":["Lab Frontier Co. Ltd, Seoul 120-750, Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Lab Frontier Co. Ltd, Seoul 120-750, Korea","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091755573","display_name":"Jieun Seo","orcid":"https://orcid.org/0000-0003-1319-832X"},"institutions":[{"id":"https://openalex.org/I138925566","display_name":"Ewha Womans University","ror":"https://ror.org/053fp5c05","country_code":"KR","type":"education","lineage":["https://openalex.org/I138925566"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"J. Seo","raw_affiliation_strings":["Center for Cell Signaling Research, Division of Molecular Life Sciences and College of Pharmacy, Ewha Womans University, Seoul 120-750, Korea,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Cell Signaling Research, Division of Molecular Life Sciences and College of Pharmacy, Ewha Womans University, Seoul 120-750, Korea,","institution_ids":["https://openalex.org/I138925566"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079735717","display_name":"Kong\u2010Joo Lee","orcid":"https://orcid.org/0000-0001-7972-6020"},"institutions":[{"id":"https://openalex.org/I138925566","display_name":"Ewha Womans University","ror":"https://ror.org/053fp5c05","country_code":"KR","type":"education","lineage":["https://openalex.org/I138925566"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"K.-J. Lee","raw_affiliation_strings":["Center for Cell Signaling Research, Division of Molecular Life Sciences and College of Pharmacy, Ewha Womans University, Seoul 120-750, Korea,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Cell Signaling Research, Division of Molecular Life Sciences and College of Pharmacy, Ewha Womans University, Seoul 120-750, Korea,","institution_ids":["https://openalex.org/I138925566"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5082966786","display_name":"Eunok Paek","orcid":"https://orcid.org/0000-0003-3655-9749"},"institutions":[{"id":"https://openalex.org/I124633538","display_name":"University of Seoul","ror":"https://ror.org/05en5nh73","country_code":"KR","type":"education","lineage":["https://openalex.org/I124633538"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"E. Paek","raw_affiliation_strings":["Department of Mechanical and Information Engineering, University of Seoul, Seoul 130-743, Korea,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mechanical and Information Engineering, University of Seoul, Seoul 130-743, Korea,","institution_ids":["https://openalex.org/I124633538"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":10,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":2.7096,"has_fulltext":true,"cited_by_count":54,"citation_normalized_percentile":{"value":0.89333747,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"34","issue":"Web Server","first_page":"W258","last_page":"W263"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10683","display_name":"Mass Spectrometry Techniques and Applications","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10602","display_name":"Glycosylation and Glycoproteins Research","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.6175601482391357},{"id":"https://openalex.org/keywords/tandem","display_name":"Tandem","score":0.6035782098770142},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5484252572059631},{"id":"https://openalex.org/keywords/mass-spectrum","display_name":"Mass spectrum","score":0.5339779853820801},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5097987055778503},{"id":"https://openalex.org/keywords/peptide","display_name":"Peptide","score":0.49436187744140625},{"id":"https://openalex.org/keywords/web-application","display_name":"Web application","score":0.49315518140792847},{"id":"https://openalex.org/keywords/tandem-mass-spectrometry","display_name":"Tandem mass spectrometry","score":0.4494089186191559},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4435373544692993},{"id":"https://openalex.org/keywords/service","display_name":"Service (business)","score":0.42714163661003113},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.36320871114730835},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.31865182518959045},{"id":"https://openalex.org/keywords/mass-spectrometry","display_name":"Mass spectrometry","score":0.2639172077178955},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.2396841049194336},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.1461142599582672},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.11630499362945557},{"id":"https://openalex.org/keywords/materials-science","display_name":"Materials science","score":0.10711440443992615}],"concepts":[{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.6175601482391357},{"id":"https://openalex.org/C2777814067","wikidata":"https://www.wikidata.org/wiki/Q1752317","display_name":"Tandem","level":2,"score":0.6035782098770142},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5484252572059631},{"id":"https://openalex.org/C40325409","wikidata":"https://www.wikidata.org/wiki/Q2360668","display_name":"Mass spectrum","level":3,"score":0.5339779853820801},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5097987055778503},{"id":"https://openalex.org/C2779281246","wikidata":"https://www.wikidata.org/wiki/Q172847","display_name":"Peptide","level":2,"score":0.49436187744140625},{"id":"https://openalex.org/C118643609","wikidata":"https://www.wikidata.org/wiki/Q189210","display_name":"Web application","level":2,"score":0.49315518140792847},{"id":"https://openalex.org/C31827203","wikidata":"https://www.wikidata.org/wiki/Q874296","display_name":"Tandem mass spectrometry","level":3,"score":0.4494089186191559},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4435373544692993},{"id":"https://openalex.org/C2780378061","wikidata":"https://www.wikidata.org/wiki/Q25351891","display_name":"Service (business)","level":2,"score":0.42714163661003113},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.36320871114730835},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.31865182518959045},{"id":"https://openalex.org/C162356407","wikidata":"https://www.wikidata.org/wiki/Q180809","display_name":"Mass spectrometry","level":2,"score":0.2639172077178955},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.2396841049194336},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.1461142599582672},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.11630499362945557},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.10711440443992615},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C136264566","wikidata":"https://www.wikidata.org/wiki/Q159810","display_name":"Economy","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C159985019","wikidata":"https://www.wikidata.org/wiki/Q181790","display_name":"Composite material","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011499","descriptor_name":"Protein Processing, Post-Translational","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011499","descriptor_name":"Protein Processing, Post-Translational","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011499","descriptor_name":"Protein Processing, Post-Translational","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gkl245","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkl245","pdf_url":"https://academic.oup.com/nar/article-pdf/34/suppl_2/W258/7623395/gkl245.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:16845006","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/16845006","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:europepmc.org:338345","is_oa":false,"landing_page_url":"http://europepmc.org/pmc/articles/PMC1538808","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:1538808","is_oa":true,"landing_page_url":"http://doi.org/10.1093/nar/gkl245","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkl245","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkl245","pdf_url":"https://academic.oup.com/nar/article-pdf/34/suppl_2/W258/7623395/gkl245.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320321365","display_name":"Ewha Womans University","ror":"https://ror.org/053fp5c05"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2029900321.pdf","grobid_xml":"https://content.openalex.org/works/W2029900321.grobid-xml"},"referenced_works_count":21,"referenced_works":["https://openalex.org/W1971887998","https://openalex.org/W1974658033","https://openalex.org/W1981593008","https://openalex.org/W1982537978","https://openalex.org/W1986175756","https://openalex.org/W2004626510","https://openalex.org/W2023096047","https://openalex.org/W2025075986","https://openalex.org/W2026465178","https://openalex.org/W2035283832","https://openalex.org/W2038615001","https://openalex.org/W2039461477","https://openalex.org/W2058135122","https://openalex.org/W2075036506","https://openalex.org/W2079056345","https://openalex.org/W2092456230","https://openalex.org/W2103619713","https://openalex.org/W2135656292","https://openalex.org/W2150746288","https://openalex.org/W2163078532","https://openalex.org/W3136323740"],"related_works":["https://openalex.org/W2023186083","https://openalex.org/W4323262585","https://openalex.org/W4211086969","https://openalex.org/W2890607860","https://openalex.org/W4380869615","https://openalex.org/W2798825245","https://openalex.org/W2476689833","https://openalex.org/W2519652201","https://openalex.org/W2025127327","https://openalex.org/W2154144052"],"abstract_inverted_index":{"MOD(i)":[0,117],"(http://modi.uos.ac.kr/modi/)":[1],"is":[2,26,54,118,139],"a":[3,23,33,52,115,142,153],"powerful":[4,27],"and":[5,45,75,102,106,134,137,156],"convenient":[6,119],"web":[7],"service":[8],"that":[9,29,68,121],"facilitates":[10],"the":[11,46,61,70,92,98],"interpretation":[12,67],"of":[13,40,48,60,72],"tandem":[14,34],"mass":[15,35],"spectra":[16,66],"for":[17,65,79,89],"identifying":[18],"post-translational":[19],"modifications":[20],"(PTMs)":[21],"in":[22,28,51,56,114,120,152],"peptide.":[24],"It":[25],"it":[30,122,138],"can":[31,87,108,123,166],"interpret":[32],"spectrum":[36],"even":[37],"when":[38],"hundreds":[39],"modification":[41],"types":[42,76],"are":[43],"considered":[44],"number":[47,71],"potential":[49],"PTMs":[50,104],"peptide":[53],"large,":[55],"contrast":[57],"to":[58,148],"most":[59],"methods":[62],"currently":[63],"available":[64],"limit":[69],"PTM":[73,80,94,112],"sites":[74,113],"being":[77],"used":[78],"analysis.":[81],"For":[82],"example,":[83],"using":[84,172],"MOD(i),":[85],"one":[86,107,165],"consider":[88],"analysis":[90],"both":[91],"entire":[93],"list":[95],"published":[96],"on":[97],"unimod":[99],"webpage":[100],"(http://www.unimod.org)":[101],"user-defined":[103],"simultaneously,":[105],"also":[109],"identify":[110],"multiple":[111],"spectrum.":[116],"take":[124],"various":[125],"input":[126],"file":[127],"formats":[128],"such":[129],"as":[130],".mzXML,":[131],".dta,":[132],".pkl":[133],".mgf":[135],"files,":[136],"equipped":[140],"with":[141],"graphical":[143],"tool":[144],"called":[145],"MassPective":[146],"developed":[147],"display":[149],"MOD(i)'s":[150,160],"output":[151,161],"user-friendly":[154],"manner":[155],"helps":[157],"users":[158],"understand":[159],"quickly.":[162],"In":[163],"addition,":[164],"perform":[167],"manual":[168],"de":[169],"novo":[170],"sequencing":[171],"MassPective.":[173]},"counts_by_year":[{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":5},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":5}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
