{"id":"https://openalex.org/W2149385661","doi":"https://doi.org/10.1093/nar/gkl236","title":"FASTSNP: an always up-to-date and extendable service for SNP function analysis and prioritization","display_name":"FASTSNP: an always up-to-date and extendable service for SNP function analysis and prioritization","publication_year":2006,"publication_date":"2006-07-01","ids":{"openalex":"https://openalex.org/W2149385661","doi":"https://doi.org/10.1093/nar/gkl236","mag":"2149385661","pmid":"https://pubmed.ncbi.nlm.nih.gov/16845089"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkl236","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkl236","pdf_url":"https://academic.oup.com/nar/article-pdf/34/suppl_2/W635/7623354/gkl236.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/34/suppl_2/W635/7623354/gkl236.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5059471237","display_name":"Hsiang\u2010Yu Yuan","orcid":"https://orcid.org/0000-0003-0061-0012"},"institutions":[{"id":"https://openalex.org/I4210096666","display_name":"Institute of Biomedical Sciences, Academia Sinica","ror":"https://ror.org/00tk6s776","country_code":"TW","type":"facility","lineage":["https://openalex.org/I4210096666","https://openalex.org/I84653119"]}],"countries":["TW"],"is_corresponding":true,"raw_author_name":"H.-Y. Yuan","raw_affiliation_strings":["Institute of Biomedical Sciences, Academia Sinica, Taipei, Taiwan"],"affiliations":[{"raw_affiliation_string":"Institute of Biomedical Sciences, Academia Sinica, Taipei, Taiwan","institution_ids":["https://openalex.org/I4210096666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027088337","display_name":"Jen-Jie Chiou","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"J.-J. Chiou","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040611045","display_name":"Wen-Hsien Tseng","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"W.-H. Tseng","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015852910","display_name":"Chia-Hung Liu","orcid":"https://orcid.org/0000-0003-2327-1295"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"C.-H. Liu","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046119745","display_name":"Chuan-Kun Liu","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"C.-K. Liu","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035617723","display_name":"Yi-Jung Lin","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Y.-J. Lin","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037244284","display_name":"Hui-Hung Wang","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"H.-H. Wang","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113689444","display_name":"Adam Yao","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"A. Yao","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5105413537","display_name":"Yuan\u2010Tsong Chen","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Y.-T. Chen","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5040580626","display_name":"Chun\u2010Nan Hsu","orcid":"https://orcid.org/0000-0002-5240-4707"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"C.-N. Hsu","raw_affiliation_strings":[],"affiliations":[]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5059471237"],"corresponding_institution_ids":["https://openalex.org/I4210096666"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":10.6243,"has_fulltext":false,"cited_by_count":512,"citation_normalized_percentile":{"value":0.99037375,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"34","issue":"Web Server","first_page":"W635","last_page":"W641"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7739983797073364},{"id":"https://openalex.org/keywords/single-nucleotide-polymorphism","display_name":"Single-nucleotide polymorphism","score":0.7425458431243896},{"id":"https://openalex.org/keywords/snp","display_name":"SNP","score":0.6522572040557861},{"id":"https://openalex.org/keywords/prioritization","display_name":"Prioritization","score":0.6454748511314392},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.6148033142089844},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.49495309591293335},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.42565372586250305},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.4064781665802002},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.2804112136363983},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.19350969791412354},{"id":"https://openalex.org/keywords/genotype","display_name":"Genotype","score":0.18472829461097717},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.13947445154190063},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.11732181906700134},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.05639541149139404}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7739983797073364},{"id":"https://openalex.org/C153209595","wikidata":"https://www.wikidata.org/wiki/Q501128","display_name":"Single-nucleotide polymorphism","level":4,"score":0.7425458431243896},{"id":"https://openalex.org/C139275648","wikidata":"https://www.wikidata.org/wiki/Q17134011","display_name":"SNP","level":5,"score":0.6522572040557861},{"id":"https://openalex.org/C2777615720","wikidata":"https://www.wikidata.org/wiki/Q11888847","display_name":"Prioritization","level":2,"score":0.6454748511314392},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.6148033142089844},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.49495309591293335},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.42565372586250305},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4064781665802002},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.2804112136363983},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.19350969791412354},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.18472829461097717},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.13947445154190063},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.11732181906700134},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.05639541149139404},{"id":"https://openalex.org/C539667460","wikidata":"https://www.wikidata.org/wiki/Q2414942","display_name":"Management science","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D005787","descriptor_name":"Gene Frequency","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005787","descriptor_name":"Gene Frequency","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005787","descriptor_name":"Gene Frequency","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012306","descriptor_name":"Risk","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012306","descriptor_name":"Risk","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012306","descriptor_name":"Risk","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020022","descriptor_name":"Genetic Predisposition to Disease","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020022","descriptor_name":"Genetic Predisposition to Disease","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020022","descriptor_name":"Genetic Predisposition to Disease","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gkl236","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkl236","pdf_url":"https://academic.oup.com/nar/article-pdf/34/suppl_2/W635/7623354/gkl236.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:16845089","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/16845089","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:1538865","is_oa":true,"landing_page_url":"http://doi.org/10.1093/nar/gkl236","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkl236","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkl236","pdf_url":"https://academic.oup.com/nar/article-pdf/34/suppl_2/W635/7623354/gkl236.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17","score":0.4300000071525574}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2149385661.pdf","grobid_xml":"https://content.openalex.org/works/W2149385661.grobid-xml"},"referenced_works_count":36,"referenced_works":["https://openalex.org/W1552303663","https://openalex.org/W1572772177","https://openalex.org/W1926851645","https://openalex.org/W1969673534","https://openalex.org/W1988331425","https://openalex.org/W2011488786","https://openalex.org/W2038921819","https://openalex.org/W2051231851","https://openalex.org/W2058401000","https://openalex.org/W2063007776","https://openalex.org/W2065568440","https://openalex.org/W2066614521","https://openalex.org/W2085442947","https://openalex.org/W2090335524","https://openalex.org/W2102553995","https://openalex.org/W2103148772","https://openalex.org/W2107903949","https://openalex.org/W2108514550","https://openalex.org/W2109372707","https://openalex.org/W2111753415","https://openalex.org/W2122232025","https://openalex.org/W2124767974","https://openalex.org/W2125887220","https://openalex.org/W2129682060","https://openalex.org/W2131709305","https://openalex.org/W2133592815","https://openalex.org/W2138891742","https://openalex.org/W2142598435","https://openalex.org/W2148853951","https://openalex.org/W2151625863","https://openalex.org/W2161645441","https://openalex.org/W2168783124","https://openalex.org/W2169398072","https://openalex.org/W4230932396","https://openalex.org/W4241391257","https://openalex.org/W4254753097"],"related_works":["https://openalex.org/W2164855536","https://openalex.org/W1997352593","https://openalex.org/W2143489661","https://openalex.org/W2070581548","https://openalex.org/W3016573916","https://openalex.org/W4281711902","https://openalex.org/W3206555169","https://openalex.org/W3157359833","https://openalex.org/W3024317680","https://openalex.org/W2571299013"],"abstract_inverted_index":{"Single":[0],"nucleotide":[1,39],"polymorphism":[2],"(SNP)":[3],"prioritization":[4,78],"based":[5],"on":[6],"the":[7,17,71,85,115,125,143],"phenotypic":[8,58],"risk":[9,18,137],"is":[10,41,69,79,104,179],"essential":[11],"for":[12,37,76,142,157,165],"association":[13],"studies.":[14],"Assessment":[15],"of":[16,24,67,98,117],"requires":[19],"access":[20],"to":[21,48,56,172],"a":[22,42,96,134,148,152,174],"variety":[23],"heterogeneous":[25],"biological":[26],"databases":[27],"and":[28,34,51,60,168],"analytical":[29],"tools.":[30],"FASTSNP":[31,68,83,103,164,169,178],"(function":[32],"analysis":[33],"selection":[35],"tool":[36],"single":[38],"polymorphisms)":[40],"web":[43,90,99],"server":[44],"that":[45,70,131,151],"allows":[46],"users":[47],"efficiently":[49],"identify":[50],"prioritize":[52],"high-risk":[53],"SNPs":[54,123,132],"according":[55],"their":[57],"risks":[59],"putative":[61],"functional":[62,72,158],"effects.":[63],"A":[64],"unique":[65],"feature":[66],"effect":[73],"information":[74,86],"used":[75],"SNP":[77],"always":[80],"up-to-date,":[81],"because":[82],"extracts":[84],"from":[87,124],"11":[88],"external":[89],"servers":[91],"at":[92,181],"query":[93],"time":[94],"using":[95,163],"team":[97],"wrapper":[100,111],"agents.":[101,112],"Moreover,":[102],"extendable":[105],"by":[106],"simply":[107],"deploying":[108],"more":[109],"Web":[110],"To":[113],"validate":[114],"results":[116,129],"our":[118],"prioritization,":[119],"we":[120],"analyzed":[121],"1569":[122],"SNP500Cancer":[126],"database.":[127],"The":[128],"show":[130],"with":[133,147],"high":[135],"predicted":[136],"exhibit":[138],"low":[139],"allele":[140],"frequencies":[141],"minor":[144],"alleles,":[145],"consistent":[146],"well-known":[149],"finding":[150],"strong":[153],"selective":[154],"pressure":[155],"exists":[156],"polymorphisms.":[159],"We":[160],"have":[161],"been":[162],"2":[166],"years":[167],"enables":[170],"us":[171],"discover":[173],"novel":[175],"promoter":[176],"polymorphism.":[177],"available":[180],"http://fastsnp.ibms.sinica.edu.tw.":[182]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2023,"cited_by_count":10},{"year":2022,"cited_by_count":7},{"year":2021,"cited_by_count":8},{"year":2020,"cited_by_count":8},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":7},{"year":2017,"cited_by_count":18},{"year":2016,"cited_by_count":25},{"year":2015,"cited_by_count":22},{"year":2014,"cited_by_count":51},{"year":2013,"cited_by_count":73},{"year":2012,"cited_by_count":69}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
