{"id":"https://openalex.org/W2113888028","doi":"https://doi.org/10.1093/nar/gkl213","title":"New Onto-Tools: Promoter-Express, nsSNPCounter and Onto-Translate","display_name":"New Onto-Tools: Promoter-Express, nsSNPCounter and Onto-Translate","publication_year":2006,"publication_date":"2006-07-01","ids":{"openalex":"https://openalex.org/W2113888028","doi":"https://doi.org/10.1093/nar/gkl213","mag":"2113888028","pmid":"https://pubmed.ncbi.nlm.nih.gov/16845086"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkl213","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkl213","pdf_url":"https://academic.oup.com/nar/article-pdf/34/suppl_2/W626/7623191/gkl213.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/34/suppl_2/W626/7623191/gkl213.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5083763463","display_name":"Purvesh Khatri","orcid":"https://orcid.org/0000-0002-4143-4708"},"institutions":[{"id":"https://openalex.org/I185443292","display_name":"Wayne State University","ror":"https://ror.org/01070mq45","country_code":"US","type":"education","lineage":["https://openalex.org/I185443292"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"P. Khatri","raw_affiliation_strings":["Department of Computer Science, Wayne State University, 431 State Hall, Detroit, MI 48202, USA","Wayne State University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Wayne State University, 431 State Hall, Detroit, MI 48202, USA","institution_ids":["https://openalex.org/I185443292"]},{"raw_affiliation_string":"Wayne State University","institution_ids":["https://openalex.org/I185443292"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108518990","display_name":"Valmik Desai","orcid":null},"institutions":[{"id":"https://openalex.org/I185443292","display_name":"Wayne State University","ror":"https://ror.org/01070mq45","country_code":"US","type":"education","lineage":["https://openalex.org/I185443292"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"V. Desai","raw_affiliation_strings":["Wayne State University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Wayne State University","institution_ids":["https://openalex.org/I185443292"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043404288","display_name":"Adi L. Tarca","orcid":"https://orcid.org/0000-0003-1712-7588"},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210144228","display_name":"Eunice Kennedy Shriver National Institute of Child Health and Human Development","ror":"https://ror.org/04byxyr05","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210144228"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"A. L. Tarca","raw_affiliation_strings":["Perinatology Research Branch, NIH/NICHD, 4 Brush, 3990 John R, Detroit, MI 48201, USA","National Institutes of Health"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Perinatology Research Branch, NIH/NICHD, 4 Brush, 3990 John R, Detroit, MI 48201, USA","institution_ids":["https://openalex.org/I4210144228"]},{"raw_affiliation_string":"National Institutes of Health","institution_ids":["https://openalex.org/I1299303238"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053044715","display_name":"S. Sellamuthu","orcid":null},"institutions":[{"id":"https://openalex.org/I185443292","display_name":"Wayne State University","ror":"https://ror.org/01070mq45","country_code":"US","type":"education","lineage":["https://openalex.org/I185443292"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"S. Sellamuthu","raw_affiliation_strings":["Wayne State University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Wayne State University","institution_ids":["https://openalex.org/I185443292"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064052128","display_name":"Derek E. Wildman","orcid":"https://orcid.org/0000-0002-6374-5136"},"institutions":[{"id":"https://openalex.org/I4210133830","display_name":"Laboratoire d\u2019immunologie int\u00e9grative du cancer","ror":"https://ror.org/03cqwn895","country_code":"FR","type":"facility","lineage":["https://openalex.org/I154526488","https://openalex.org/I154526488","https://openalex.org/I204730241","https://openalex.org/I204730241","https://openalex.org/I39804081","https://openalex.org/I39804081","https://openalex.org/I4210092322","https://openalex.org/I4210133830"]},{"id":"https://openalex.org/I4210144228","display_name":"Eunice Kennedy Shriver National Institute of Child Health and Human Development","ror":"https://ror.org/04byxyr05","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210144228"]}],"countries":["FR","US"],"is_corresponding":false,"raw_author_name":"D. E. Wildman","raw_affiliation_strings":["Perinatology Research Branch, NIH/NICHD, 4 Brush, 3990 John R, Detroit, MI 48201, USA","Molecular and Integrative Physiology"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Perinatology Research Branch, NIH/NICHD, 4 Brush, 3990 John R, Detroit, MI 48201, USA","institution_ids":["https://openalex.org/I4210144228"]},{"raw_affiliation_string":"Molecular and Integrative Physiology","institution_ids":["https://openalex.org/I4210133830"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067511554","display_name":"Roberto Romero","orcid":"https://orcid.org/0000-0002-4448-5121"},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210144228","display_name":"Eunice Kennedy Shriver National Institute of Child Health and Human Development","ror":"https://ror.org/04byxyr05","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210144228"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"R. Romero","raw_affiliation_strings":["Perinatology Research Branch, NIH/NICHD, 4 Brush, 3990 John R, Detroit, MI 48201, USA","National Institutes of Health"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Perinatology Research Branch, NIH/NICHD, 4 Brush, 3990 John R, Detroit, MI 48201, USA","institution_ids":["https://openalex.org/I4210144228"]},{"raw_affiliation_string":"National Institutes of Health","institution_ids":["https://openalex.org/I1299303238"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5006190733","display_name":"Sorin Dr\u0103ghici","orcid":"https://orcid.org/0000-0002-0786-8377"},"institutions":[{"id":"https://openalex.org/I185443292","display_name":"Wayne State University","ror":"https://ror.org/01070mq45","country_code":"US","type":"education","lineage":["https://openalex.org/I185443292"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"S. Draghici","raw_affiliation_strings":["Wayne State University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Wayne State University","institution_ids":["https://openalex.org/I185443292"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5083763463"],"corresponding_institution_ids":["https://openalex.org/I185443292"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":1.6208,"has_fulltext":true,"cited_by_count":22,"citation_normalized_percentile":{"value":0.8215551,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":97,"max":98},"biblio":{"volume":"34","issue":"Web Server","first_page":"W626","last_page":"W631"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7228624224662781},{"id":"https://openalex.org/keywords/suite","display_name":"Suite","score":0.64892578125},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5653003454208374},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.5570117235183716},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.42607367038726807},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3759932816028595},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.34059977531433105},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3182639479637146}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7228624224662781},{"id":"https://openalex.org/C79581498","wikidata":"https://www.wikidata.org/wiki/Q1367530","display_name":"Suite","level":2,"score":0.64892578125},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5653003454208374},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.5570117235183716},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.42607367038726807},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3759932816028595},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.34059977531433105},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3182639479637146},{"id":"https://openalex.org/C166957645","wikidata":"https://www.wikidata.org/wiki/Q23498","display_name":"Archaeology","level":1,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C95457728","wikidata":"https://www.wikidata.org/wiki/Q309","display_name":"History","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011401","descriptor_name":"Promoter Regions, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011401","descriptor_name":"Promoter Regions, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011401","descriptor_name":"Promoter Regions, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":6,"locations":[{"id":"doi:10.1093/nar/gkl213","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkl213","pdf_url":"https://academic.oup.com/nar/article-pdf/34/suppl_2/W626/7623191/gkl213.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:16845086","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/16845086","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.594.3475","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.594.3475","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/content/34/suppl_2/W626.full-text-lowres.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.995.4881","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.995.4881","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/content/34/suppl_2/W626.full.pdf","raw_type":"text"},{"id":"pmh:oai:europepmc.org:1341251","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/1538776","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:1538776","is_oa":true,"landing_page_url":"http://doi.org/10.1093/nar/gkl213","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkl213","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkl213","pdf_url":"https://academic.oup.com/nar/article-pdf/34/suppl_2/W626/7623191/gkl213.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.44999998807907104,"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17"}],"awards":[{"id":"https://openalex.org/G1142606867","display_name":null,"funder_award_id":"S10 RR017857","funder_id":"https://openalex.org/F4320337375","funder_display_name":"National Center for Research Resources"},{"id":"https://openalex.org/G21314449","display_name":null,"funder_award_id":"1R01HG003491-01A1","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G3042467564","display_name":null,"funder_award_id":"R21 EB000990","funder_id":"https://openalex.org/F4320337363","funder_display_name":"National Institute of Biomedical Imaging and Bioengineering"},{"id":"https://openalex.org/G4028382677","display_name":null,"funder_award_id":"R01 HG003491","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G4411972021","display_name":null,"funder_award_id":"R01 NS045207","funder_id":"https://openalex.org/F4320337359","funder_display_name":"National Institute of Neurological Disorders and Stroke"},{"id":"https://openalex.org/G5113317326","display_name":null,"funder_award_id":"1S10 RR017857-01","funder_id":"https://openalex.org/F4320337375","funder_display_name":"National Center for Research Resources"},{"id":"https://openalex.org/G6154735872","display_name":"Novel Tools for the Vertical Analysis of Genomic Data","funder_award_id":"0234806","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6661038815","display_name":null,"funder_award_id":"1R01 NS045207-01","funder_id":"https://openalex.org/F4320337359","funder_display_name":"National Institute of Neurological Disorders and Stroke"},{"id":"https://openalex.org/G7300813912","display_name":null,"funder_award_id":"1R21 CA10074001","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G7547201924","display_name":null,"funder_award_id":"1R21 EB00990-01","funder_id":"https://openalex.org/F4320337363","funder_display_name":"National Institute of Biomedical Imaging and Bioengineering"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320306078","display_name":"U.S. Department of Defense","ror":"https://ror.org/0447fe631"},{"id":"https://openalex.org/F4320306085","display_name":"U.S. Department of Health and Human Services","ror":"https://ror.org/033jnv181"},{"id":"https://openalex.org/F4320308158","display_name":"Michigan Economic Development Corporation","ror":"https://ror.org/01y4ah893"},{"id":"https://openalex.org/F4320312826","display_name":"Massachusetts Life Sciences Center","ror":null},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337348","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391"},{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"},{"id":"https://openalex.org/F4320337359","display_name":"National Institute of Neurological Disorders and Stroke","ror":"https://ror.org/01s5ya894"},{"id":"https://openalex.org/F4320337363","display_name":"National Institute of Biomedical Imaging and Bioengineering","ror":"https://ror.org/00372qc85"},{"id":"https://openalex.org/F4320337364","display_name":"National Institute of Child Health and Human Development","ror":"https://ror.org/04byxyr05"},{"id":"https://openalex.org/F4320337375","display_name":"National Center for Research Resources","ror":"https://ror.org/04pw6fb54"},{"id":"https://openalex.org/F4320337398","display_name":"Division of Biological Infrastructure","ror":"https://ror.org/04qn9mx93"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2113888028.pdf","grobid_xml":"https://content.openalex.org/works/W2113888028.grobid-xml"},"referenced_works_count":40,"referenced_works":["https://openalex.org/W1535641839","https://openalex.org/W1593132348","https://openalex.org/W1597538863","https://openalex.org/W1972673599","https://openalex.org/W1986891966","https://openalex.org/W1990144966","https://openalex.org/W1998902445","https://openalex.org/W2041956242","https://openalex.org/W2045143950","https://openalex.org/W2050902903","https://openalex.org/W2082213640","https://openalex.org/W2086914764","https://openalex.org/W2094697698","https://openalex.org/W2099950599","https://openalex.org/W2101690350","https://openalex.org/W2103017472","https://openalex.org/W2115011276","https://openalex.org/W2115650522","https://openalex.org/W2119412782","https://openalex.org/W2121298930","https://openalex.org/W2126382397","https://openalex.org/W2130479394","https://openalex.org/W2131709305","https://openalex.org/W2131924932","https://openalex.org/W2135230352","https://openalex.org/W2139084975","https://openalex.org/W2140000393","https://openalex.org/W2146202528","https://openalex.org/W2148115950","https://openalex.org/W2148853951","https://openalex.org/W2152545090","https://openalex.org/W2161062388","https://openalex.org/W2165270659","https://openalex.org/W2416232867","https://openalex.org/W4242043490","https://openalex.org/W4246066782","https://openalex.org/W4248234957","https://openalex.org/W4251079740","https://openalex.org/W4254753097","https://openalex.org/W6675471023"],"related_works":["https://openalex.org/W2361861616","https://openalex.org/W4231704780","https://openalex.org/W2263699433","https://openalex.org/W2377979023","https://openalex.org/W2083794993","https://openalex.org/W2218034408","https://openalex.org/W2392921965","https://openalex.org/W352609212","https://openalex.org/W2358755282","https://openalex.org/W1511772879"],"abstract_inverted_index":{"The":[0],"Onto-Tools":[1,33,90,105],"suite":[2],"is":[3,26,49],"composed":[4],"of":[5,39,58,68,88,100],"an":[6],"annotation":[7],"database":[8],"and":[9,23,56,60,81],"eight":[10],"complementary,":[11],"web-accessible":[12],"data":[13],"mining":[14],"tools:":[15],"Onto-Express,":[16],"Onto-Compare,":[17],"Onto-Design,":[18],"Onto-Translate,":[19],"Onto-Miner,":[20],"Pathway-Express,":[21],"Promoter-Express":[22,25],"nsSNPCounter.":[24],"a":[27],"new":[28,51],"tool":[29,52],"added":[30],"to":[31,77],"the":[32,37,86,89],"ensemble":[34],"that":[35,53],"facilitates":[36],"identification":[38],"transcription":[40],"factor":[41],"binding":[42],"sites":[43],"active":[44],"in":[45],"specific":[46],"conditions.":[47],"nsSNPCounter":[48],"another":[50],"allows":[54,94],"computation":[55],"analysis":[57],"synonymous":[59],"non-synonymous":[61],"codon":[62],"substitutions":[63],"for":[64,102],"studying":[65],"evolutionary":[66],"rates":[67],"protein":[69],"coding":[70],"genes.":[71],"Onto-Translate":[72,93],"has":[73],"also":[74],"been":[75],"enhanced":[76],"expand":[78],"its":[79],"scope":[80],"accuracy":[82],"by":[83],"fully":[84],"utilizing":[85],"capabilities":[87],"database.":[91],"Currently,":[92],"arbitrary":[95],"mappings":[96],"between":[97],"28":[98],"types":[99],"IDs":[101],"53":[103],"organisms.":[104],"are":[106],"freely":[107],"available":[108],"at":[109],"http://vortex.cs.wayne.edu/Projects.html.":[110]},"counts_by_year":[{"year":2012,"cited_by_count":4}],"updated_date":"2026-07-13T07:31:44.756512","created_date":"2025-10-10T00:00:00"}
