{"id":"https://openalex.org/W2154190574","doi":"https://doi.org/10.1093/nar/gkl208","title":"PONGO: a web server for multiple predictions of all-alpha transmembrane proteins","display_name":"PONGO: a web server for multiple predictions of all-alpha transmembrane proteins","publication_year":2006,"publication_date":"2006-07-01","ids":{"openalex":"https://openalex.org/W2154190574","doi":"https://doi.org/10.1093/nar/gkl208","mag":"2154190574","pmid":"https://pubmed.ncbi.nlm.nih.gov/16844984"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkl208","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkl208","pdf_url":"https://academic.oup.com/nar/article-pdf/34/suppl_2/W169/7623145/gkl208.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/34/suppl_2/W169/7623145/gkl208.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5064551834","display_name":"Mauro Amico","orcid":null},"institutions":[{"id":"https://openalex.org/I4210119786","display_name":"Cineca","ror":"https://ror.org/02f013h18","country_code":"IT","type":"other","lineage":["https://openalex.org/I4210119786"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"M. Amico","raw_affiliation_strings":["BioDec Srl, via Calzavecchio, 20/2, I-40033 Casalecchio di Reno, (BO), Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"BioDec Srl, via Calzavecchio, 20/2, I-40033 Casalecchio di Reno, (BO), Italy","institution_ids":["https://openalex.org/I4210119786"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072355298","display_name":"Michele Finelli","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"M. Finelli","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079319034","display_name":"Ivan Rossi","orcid":"https://orcid.org/0000-0002-2077-7496"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"I. Rossi","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065847479","display_name":"Andrea Zauli","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"A. Zauli","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072903725","display_name":"Arne Elofsson","orcid":"https://orcid.org/0000-0002-7115-9751"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"A. Elofsson","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028752514","display_name":"H\u00e5kan Viklund","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"H. Viklund","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007682824","display_name":"Gunnar von Heijne","orcid":"https://orcid.org/0000-0002-4490-8569"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"G. von Heijne","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068654082","display_name":"David T. Jones","orcid":"https://orcid.org/0000-0001-8626-3765"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"D. Jones","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083542637","display_name":"Anders Krogh","orcid":"https://orcid.org/0000-0002-5147-6282"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"A. Krogh","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060232841","display_name":"Piero Fariselli","orcid":"https://orcid.org/0000-0003-1811-4762"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"P. Fariselli","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044479288","display_name":"Pier Luigi Martelli","orcid":"https://orcid.org/0000-0002-0274-5669"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"P. Luigi Martelli","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5053410790","display_name":"Rita Casadio","orcid":"https://orcid.org/0000-0002-7462-7039"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"R. Casadio","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":12,"corresponding_author_ids":["https://openalex.org/A5064551834"],"corresponding_institution_ids":["https://openalex.org/I4210119786"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":2.9987,"has_fulltext":false,"cited_by_count":41,"citation_normalized_percentile":{"value":0.91231314,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"34","issue":"Web Server","first_page":"W169","last_page":"W172"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.7542189359664917},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.7511828541755676},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6971854567527771},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.584543764591217},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4753020703792572},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.41822347044944763},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.4108617901802063},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3485390543937683},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.2059878706932068}],"concepts":[{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.7542189359664917},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.7511828541755676},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6971854567527771},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.584543764591217},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4753020703792572},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.41822347044944763},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.4108617901802063},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3485390543937683},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.2059878706932068},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008565","descriptor_name":"Membrane Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D008565","descriptor_name":"Membrane Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D008565","descriptor_name":"Membrane Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":10,"locations":[{"id":"doi:10.1093/nar/gkl208","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkl208","pdf_url":"https://academic.oup.com/nar/article-pdf/34/suppl_2/W169/7623145/gkl208.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:16844984","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/16844984","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.593.9613","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.593.9613","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/content/34/suppl_2/W169.full-text-lowres.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.993.868","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.993.868","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/content/34/suppl_2/W169.full.pdf","raw_type":"text"},{"id":"pmh:oai:cris.unibo.it:11585/28778","is_oa":false,"landing_page_url":"http://hdl.handle.net/11585/28778","pdf_url":null,"source":{"id":"https://openalex.org/S4306402579","display_name":"Archivio istituzionale della ricerca (Alma Mater Studiorum Universit\u00e0 di Bologna)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210117483","host_organization_name":"Istituto di Ematologia di Bologna","host_organization_lineage":["https://openalex.org/I4210117483"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:eprints.ucl.ac.uk.OAI2:1386187","is_oa":false,"landing_page_url":"http://discovery.ucl.ac.uk/1386187/","pdf_url":null,"source":{"id":"https://openalex.org/S4306400024","display_name":"UCL Discovery (University College London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I45129253","host_organization_name":"University College London","host_organization_lineage":["https://openalex.org/I45129253"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"   NUCLEIC ACIDS RESEARCH , 34    W169-W172.   (2006)      ","raw_type":"Article"},{"id":"pmh:oai:europepmc.org:338391","is_oa":false,"landing_page_url":"http://europepmc.org/pmc/articles/PMC1538841","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:1538841","is_oa":true,"landing_page_url":"http://doi.org/10.1093/nar/gkl208","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"},{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/51cf8d70-6c37-11dc-bee9-02004c4f4f50","is_oa":false,"landing_page_url":"https://researchprofiles.ku.dk/da/publications/51cf8d70-6c37-11dc-bee9-02004c4f4f50","pdf_url":null,"source":{"id":"https://openalex.org/S4306401983","display_name":"Research at the University of Copenhagen (University of Copenhagen)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I124055696","host_organization_name":"University of Copenhagen","host_organization_lineage":["https://openalex.org/I124055696"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Amico , M , Finelli , M , Rossi , I , Zauli , A , Elofsson , A , Viklund , H , Heijne , G V , Joes , D , Krogh , A , Fariselli , P , Luigi , M P & Casadio , R 2006 , ' PONGO: a web server for multiple predictions of all-alpha transmembrane proteins ' , Nucleic Acids Research , vol. 34 , pp. W169-72 . https://doi.org/10.1093/nar/gkl208","raw_type":"article"},{"id":"pmh:oai:www.research.unipd.it:11577/3184030","is_oa":false,"landing_page_url":"http://hdl.handle.net/11577/3184030","pdf_url":null,"source":{"id":"https://openalex.org/S4306402547","display_name":"Padua Research Archive (University of Padova)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I138689650","host_organization_name":"University of Padua","host_organization_lineage":["https://openalex.org/I138689650"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/nar/gkl208","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkl208","pdf_url":"https://academic.oup.com/nar/article-pdf/34/suppl_2/W169/7623145/gkl208.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":11,"referenced_works":["https://openalex.org/W2089606003","https://openalex.org/W2112905569","https://openalex.org/W2113535342","https://openalex.org/W2132804879","https://openalex.org/W2141487114","https://openalex.org/W2142536350","https://openalex.org/W2152748513","https://openalex.org/W2152770371","https://openalex.org/W2161746138","https://openalex.org/W2164186284","https://openalex.org/W4210580032"],"related_works":["https://openalex.org/W2361861616","https://openalex.org/W2263699433","https://openalex.org/W2377979023","https://openalex.org/W2218034408","https://openalex.org/W2392921965","https://openalex.org/W2358755282","https://openalex.org/W2625833328","https://openalex.org/W1533177136","https://openalex.org/W4380994516","https://openalex.org/W2556260348"],"abstract_inverted_index":{"The":[0,95,197],"annotation":[1,14,39,79],"efforts":[2],"of":[3,8,20,73,120,123,126,131],"the":[4,18,32,38,44,49,74,101,114,118,121,132,138,157,183,186],"BIOSAPIENS":[5],"European":[6],"Network":[7],"Excellence":[9],"have":[10],"generated":[11],"several":[12],"distributed":[13],"systems":[15],"(DAS)":[16],"with":[17,83,137,182,195],"aim":[19],"integrating":[21],"Bioinformatics":[22],"resources":[23],"and":[24,86,93,97,107,134,172],"annotating":[25],"metazoan":[26],"genomes":[27],"(http://www.biosapiens.info).":[28],"In":[29,65],"this":[30,78],"context,":[31],"PONGO":[33,198],"DAS":[34,55],"server":[35,154,187,200],"(http://pongo.biocomp.unibo.it)":[36],"provides":[37],"on":[40],"predictive":[41],"basis":[42],"for":[43,100,142,177],"all-alpha":[45],"membrane":[46,128],"proteins":[47,103],"in":[48,109,161],"human":[50,102],"genome,":[51],"not":[52],"only":[53],"through":[54],"queries,":[56],"but":[57],"also":[58,188],"directly":[59],"using":[60],"a":[61,69,110,143,151,162,178,190],"simple":[62],"web":[63,115,153,199],"interface.":[64],"order":[66],"to":[67],"produce":[68],"more":[70,135],"comprehensive":[71],"analysis":[72],"sequence":[75,140,145],"at":[76,203],"hand,":[77],"is":[80,201],"carried":[81],"out":[82],"four":[84,174],"selected":[85],"high":[87],"scoring":[88],"predictors:":[89],"TMHMM2.0,":[90],"MEMSAT,":[91],"PRODIV":[92],"ENSEMBLE1.0.":[94],"stored":[96],"pre-computed":[98],"predictions":[99,175],"can":[104,169],"be":[105],"searched":[106],"displayed":[108],"graphical":[111],"view.":[112],"However":[113],"service":[116],"allows":[117],"prediction":[119,193],"topology":[122,159],"any":[124],"kind":[125],"putative":[127,167],"proteins,":[129],"regardless":[130],"organism":[133],"importantly":[136],"same":[139],"profile":[141],"given":[144,179],"when":[146],"required.":[147],"Here":[148],"we":[149],"present":[150],"new":[152],"that":[155,166],"incorporates":[156],"state-of-the-art":[158],"predictors":[160],"single":[163],"framework,":[164],"so":[165],"users":[168],"interactively":[170],"compare":[171],"evaluate":[173],"simultaneously":[176],"sequence.":[180],"Together":[181],"predicted":[184],"topology,":[185],"displays":[189],"signal":[191],"peptide":[192],"determined":[194],"SPEP.":[196],"available":[202],"http://pongo.biocomp.unibo.it/pongo.":[204]},"counts_by_year":[{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":1}],"updated_date":"2026-05-19T21:40:30.786675","created_date":"2025-10-10T00:00:00"}