{"id":"https://openalex.org/W2014978570","doi":"https://doi.org/10.1093/nar/gkl204","title":"Arabidopsis Co-expression Tool (ACT): web server tools for microarray-based gene expression analysis","display_name":"Arabidopsis Co-expression Tool (ACT): web server tools for microarray-based gene expression analysis","publication_year":2006,"publication_date":"2006-07-01","ids":{"openalex":"https://openalex.org/W2014978570","doi":"https://doi.org/10.1093/nar/gkl204","mag":"2014978570","pmid":"https://pubmed.ncbi.nlm.nih.gov/16845059"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkl204","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkl204","pdf_url":"https://academic.oup.com/nar/article-pdf/34/suppl_2/W504/7623112/gkl204.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/34/suppl_2/W504/7623112/gkl204.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5059744923","display_name":"Iain W. Manfield","orcid":"https://orcid.org/0000-0003-3765-0325"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"I. W. Manfield","raw_affiliation_strings":["Centre for Plant Sciences, University of Leeds, West Yorkshire, LS2 9JT, UK"],"affiliations":[{"raw_affiliation_string":"Centre for Plant Sciences, University of Leeds, West Yorkshire, LS2 9JT, UK","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059993079","display_name":"Chih\u2010Hung Jen","orcid":"https://orcid.org/0000-0002-2079-1175"},"institutions":[{"id":"https://openalex.org/I130828816","display_name":"University of Leeds","ror":"https://ror.org/024mrxd33","country_code":"GB","type":"education","lineage":["https://openalex.org/I130828816"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"C.-H. Jen","raw_affiliation_strings":["Institute of Molecular and Cellular Biology, Faculty of Biological Sciences, University of Leeds, West Yorkshire, LS2 9JT, UK"],"affiliations":[{"raw_affiliation_string":"Institute of Molecular and Cellular Biology, Faculty of Biological Sciences, University of Leeds, West Yorkshire, LS2 9JT, UK","institution_ids":["https://openalex.org/I130828816"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012024356","display_name":"John W. Pinney","orcid":"https://orcid.org/0000-0003-1813-2901"},"institutions":[{"id":"https://openalex.org/I130828816","display_name":"University of Leeds","ror":"https://ror.org/024mrxd33","country_code":"GB","type":"education","lineage":["https://openalex.org/I130828816"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"J. W. Pinney","raw_affiliation_strings":["Institute of Molecular and Cellular Biology, Faculty of Biological Sciences, University of Leeds, West Yorkshire, LS2 9JT, UK"],"affiliations":[{"raw_affiliation_string":"Institute of Molecular and Cellular Biology, Faculty of Biological Sciences, University of Leeds, West Yorkshire, LS2 9JT, UK","institution_ids":["https://openalex.org/I130828816"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051395937","display_name":"Ioannis Michalopoulos","orcid":"https://orcid.org/0000-0001-8991-8712"},"institutions":[{"id":"https://openalex.org/I130828816","display_name":"University of Leeds","ror":"https://ror.org/024mrxd33","country_code":"GB","type":"education","lineage":["https://openalex.org/I130828816"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"I. Michalopoulos","raw_affiliation_strings":["Institute of Molecular and Cellular Biology, Faculty of Biological Sciences, University of Leeds, West Yorkshire, LS2 9JT, UK"],"affiliations":[{"raw_affiliation_string":"Institute of Molecular and Cellular Biology, Faculty of Biological Sciences, University of Leeds, West Yorkshire, LS2 9JT, UK","institution_ids":["https://openalex.org/I130828816"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090688793","display_name":"James Bradford","orcid":"https://orcid.org/0000-0002-7771-914X"},"institutions":[{"id":"https://openalex.org/I130828816","display_name":"University of Leeds","ror":"https://ror.org/024mrxd33","country_code":"GB","type":"education","lineage":["https://openalex.org/I130828816"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"J. R. Bradford","raw_affiliation_strings":["Institute of Molecular and Cellular Biology, Faculty of Biological Sciences, University of Leeds, West Yorkshire, LS2 9JT, UK"],"affiliations":[{"raw_affiliation_string":"Institute of Molecular and Cellular Biology, Faculty of Biological Sciences, University of Leeds, West Yorkshire, LS2 9JT, UK","institution_ids":["https://openalex.org/I130828816"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056168680","display_name":"Philip M. Gilmartin","orcid":null},"institutions":[{"id":"https://openalex.org/I4210151202","display_name":"Plant (United States)","ror":"https://ror.org/05g223j58","country_code":"US","type":"company","lineage":["https://openalex.org/I4210151202"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"P. M. Gilmartin","raw_affiliation_strings":["Centre for Plant Sciences and"],"affiliations":[{"raw_affiliation_string":"Centre for Plant Sciences and","institution_ids":["https://openalex.org/I4210151202"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5032833705","display_name":"David R. Westhead","orcid":"https://orcid.org/0000-0002-0519-3820"},"institutions":[{"id":"https://openalex.org/I130828816","display_name":"University of Leeds","ror":"https://ror.org/024mrxd33","country_code":"GB","type":"education","lineage":["https://openalex.org/I130828816"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"D. R. Westhead","raw_affiliation_strings":["Institute of Molecular and Cellular Biology, Faculty of Biological Sciences, University of Leeds, West Yorkshire, LS2 9JT, UK"],"affiliations":[{"raw_affiliation_string":"Institute of Molecular and Cellular Biology, Faculty of Biological Sciences, University of Leeds, West Yorkshire, LS2 9JT, UK","institution_ids":["https://openalex.org/I130828816"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5059744923"],"corresponding_institution_ids":[],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":8.4465,"has_fulltext":true,"cited_by_count":161,"citation_normalized_percentile":{"value":0.98455221,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"34","issue":"Web Server","first_page":"W504","last_page":"W509"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9927999973297119,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10184","display_name":"Plant Molecular Biology Research","score":0.9797999858856201,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.767409086227417},{"id":"https://openalex.org/keywords/arabidopsis","display_name":"Arabidopsis","score":0.7498092651367188},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.7107132077217102},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5906090140342712},{"id":"https://openalex.org/keywords/plot","display_name":"Plot (graphics)","score":0.5623649954795837},{"id":"https://openalex.org/keywords/scatter-plot","display_name":"Scatter plot","score":0.5450147390365601},{"id":"https://openalex.org/keywords/microarray-databases","display_name":"Microarray databases","score":0.5207100510597229},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.5201030969619751},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.4859856069087982},{"id":"https://openalex.org/keywords/microarray-analysis-techniques","display_name":"Microarray analysis techniques","score":0.481664776802063},{"id":"https://openalex.org/keywords/expression","display_name":"Expression (computer science)","score":0.47760009765625},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.4525160789489746},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.4276583790779114},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.285436749458313},{"id":"https://openalex.org/keywords/mutant","display_name":"Mutant","score":0.10599693655967712},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.09092557430267334}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.767409086227417},{"id":"https://openalex.org/C2779491563","wikidata":"https://www.wikidata.org/wiki/Q157892","display_name":"Arabidopsis","level":4,"score":0.7498092651367188},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.7107132077217102},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5906090140342712},{"id":"https://openalex.org/C167651023","wikidata":"https://www.wikidata.org/wiki/Q1474611","display_name":"Plot (graphics)","level":2,"score":0.5623649954795837},{"id":"https://openalex.org/C31462909","wikidata":"https://www.wikidata.org/wiki/Q1045782","display_name":"Scatter plot","level":2,"score":0.5450147390365601},{"id":"https://openalex.org/C548314002","wikidata":"https://www.wikidata.org/wiki/Q6839218","display_name":"Microarray databases","level":5,"score":0.5207100510597229},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5201030969619751},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.4859856069087982},{"id":"https://openalex.org/C8415881","wikidata":"https://www.wikidata.org/wiki/Q6839217","display_name":"Microarray analysis techniques","level":4,"score":0.481664776802063},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.47760009765625},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.4525160789489746},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.4276583790779114},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.285436749458313},{"id":"https://openalex.org/C143065580","wikidata":"https://www.wikidata.org/wiki/Q3285695","display_name":"Mutant","level":3,"score":0.10599693655967712},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.09092557430267334},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002940","descriptor_name":"Circadian Rhythm","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002940","descriptor_name":"Circadian Rhythm","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002940","descriptor_name":"Circadian Rhythm","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017343","descriptor_name":"Genes, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017343","descriptor_name":"Genes, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017343","descriptor_name":"Genes, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1093/nar/gkl204","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkl204","pdf_url":"https://academic.oup.com/nar/article-pdf/34/suppl_2/W504/7623112/gkl204.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:16845059","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/16845059","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:eprints.whiterose.ac.uk:107768","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306400854","display_name":"White Rose Research Online (University of Leeds, The University of Sheffield, University of York)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2800616092","host_organization_name":"White Rose University Consortium","host_organization_lineage":["https://openalex.org/I2800616092"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.276.1305","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.276.1305","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ftp://ftp.ncbi.nlm.nih.gov/pub/pmc/cd/9a/Nucleic_Acids_Res_2006_Jul_1_34(Web_Server_issue)_W504-W509.tar.gz","raw_type":"text"},{"id":"pmh:oai:europepmc.org:338374","is_oa":false,"landing_page_url":"http://europepmc.org/pmc/articles/PMC1538833","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:1538833","is_oa":true,"landing_page_url":"http://doi.org/10.1093/nar/gkl204","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"},{"id":"pmh:oai:ueaeprints.uea.ac.uk:44263","is_oa":false,"landing_page_url":"https://ueaeprints.uea.ac.uk/id/eprint/44263/","pdf_url":null,"source":{"id":"https://openalex.org/S4306400384","display_name":"UEA Digital Repository (University of East Anglia)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1118541","host_organization_name":"University of East Anglia","host_organization_lineage":["https://openalex.org/I1118541"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"PeerReviewed"}],"best_oa_location":{"id":"doi:10.1093/nar/gkl204","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkl204","pdf_url":"https://academic.oup.com/nar/article-pdf/34/suppl_2/W504/7623112/gkl204.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/10","score":0.4300000071525574,"display_name":"Reduced inequalities"}],"awards":[{"id":"https://openalex.org/G1990576317","display_name":null,"funder_award_id":"BBSRC","funder_id":"https://openalex.org/F4320334626","funder_display_name":"Medical Research Council"}],"funders":[{"id":"https://openalex.org/F4320320298","display_name":"University of Leeds","ror":"https://ror.org/024mrxd33"},{"id":"https://openalex.org/F4320332167","display_name":"Directorate for Biological Sciences","ror":"https://ror.org/001xhss06"},{"id":"https://openalex.org/F4320334626","display_name":"Medical Research Council","ror":"https://ror.org/03x94j517"},{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2014978570.pdf","grobid_xml":"https://content.openalex.org/works/W2014978570.grobid-xml"},"referenced_works_count":23,"referenced_works":["https://openalex.org/W1788633327","https://openalex.org/W1954784702","https://openalex.org/W1968610642","https://openalex.org/W1997530554","https://openalex.org/W2056780622","https://openalex.org/W2065996794","https://openalex.org/W2066299394","https://openalex.org/W2069611131","https://openalex.org/W2074403192","https://openalex.org/W2116007667","https://openalex.org/W2116027790","https://openalex.org/W2120037909","https://openalex.org/W2125776280","https://openalex.org/W2128667600","https://openalex.org/W2136067601","https://openalex.org/W2137970956","https://openalex.org/W2139703939","https://openalex.org/W2146872370","https://openalex.org/W2147090904","https://openalex.org/W2150926065","https://openalex.org/W2152035950","https://openalex.org/W2610493035","https://openalex.org/W4245337778"],"related_works":["https://openalex.org/W4320303648","https://openalex.org/W3112288064","https://openalex.org/W2489311714","https://openalex.org/W3214510223","https://openalex.org/W2263439615","https://openalex.org/W2490137852","https://openalex.org/W2056932428","https://openalex.org/W3023720143","https://openalex.org/W1483316219","https://openalex.org/W2412120523"],"abstract_inverted_index":{"The":[0,84],"Arabidopsis":[1],"Co-expression":[2],"Tool,":[3],"ACT,":[4],"ranks":[5],"the":[6,20,61,95,113,149,175,178,182],"genes":[7,35,71,102,118,137,144,154,161,180,196],"across":[8,79],"a":[9,23,80,108,124],"large":[10],"microarray":[11],"dataset":[12],"according":[13],"to":[14,90,171,191],"how":[15],"closely":[16],"their":[17],"expression":[18,21],"follows":[19],"of":[22,50,56,70,101,134,136,143,153,160,177,195],"query":[24],"gene.":[25],"A":[26],"database":[27],"stores":[28],"pre-calculated":[29],"co-expression":[30,51,82],"results":[31,44,52],"for":[32,53,98,116,131,197],"approximately":[33],"21,800":[34],"based":[36],"on":[37,123,148],"data":[38],"from":[39,60],"over":[40],"300":[41],"arrays.":[42],"These":[43],"can":[45,86,128,145,187],"be":[46,87,129,146,172,189],"corroborated":[47],"by":[48],"calculation":[49],"user-defined":[54,81],"sub-sets":[55],"arrays":[57],"or":[58],"experiments":[59],"NASC/GARNet":[62],"array":[63],"dataset.":[64],"Clique":[65],"Finder":[66],"(CF)":[67],"identifies":[68],"groups":[69,142],"which":[72,127],"are":[73],"consistently":[74],"co-expressed":[75],"with":[76,103,138,155],"each":[77],"other":[78,179],"list.":[83],"parameters":[85],"altered":[88],"easily":[89],"adjust":[91],"cluster":[92],"size":[93],"and":[94,165,184],"output":[96],"examined":[97],"optimal":[99],"inclusion":[100],"known":[104,156],"biological":[105],"roles.":[106],"Alternatively,":[107],"Scatter":[109,166],"Plot":[110,167],"tool":[111],"displays":[112],"correlation":[114],"coefficients":[115],"all":[117],"against":[119],"two":[120],"user-selected":[121],"queries":[122],"scatter":[125,150],"plot":[126],"useful":[130],"visual":[132],"identification":[133],"clusters":[135],"similar":[139],"r-values.":[140],"User-input":[141],"highlighted":[147],"plots.":[151],"Inclusion":[152],"biology":[157],"in":[158,181],"sets":[159],"identified":[162],"using":[163],"CF":[164],"tools":[168,186],"allows":[169],"inferences":[170],"made":[173],"about":[174],"roles":[176],"set":[183],"both":[185],"therefore":[188],"used":[190],"generate":[192],"short":[193],"lists":[194],"further":[198],"characterization.":[199],"ACT":[200],"is":[201],"freely":[202],"available":[203],"at":[204],"www.Arabidopsis.leeds.ac.uk/ACT.":[205]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":3},{"year":2017,"cited_by_count":5},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":11},{"year":2013,"cited_by_count":16},{"year":2012,"cited_by_count":12}],"updated_date":"2026-04-22T08:38:42.863108","created_date":"2025-10-10T00:00:00"}