{"id":"https://openalex.org/W2141681998","doi":"https://doi.org/10.1093/nar/gkl1004","title":"Genome Information Broker for Viruses (GIB-V): database for comparative analysis of virus genomes","display_name":"Genome Information Broker for Viruses (GIB-V): database for comparative analysis of virus genomes","publication_year":2006,"publication_date":"2006-12-07","ids":{"openalex":"https://openalex.org/W2141681998","doi":"https://doi.org/10.1093/nar/gkl1004","mag":"2141681998","pmid":"https://pubmed.ncbi.nlm.nih.gov/17158166"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkl1004","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkl1004","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/nar/gkl1004","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5066545955","display_name":"M. Hirahata","orcid":null},"institutions":[{"id":"https://openalex.org/I47232531","display_name":"Bank of Japan","ror":"https://ror.org/04zmdqe71","country_code":"JP","type":"other","lineage":["https://openalex.org/I47232531"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"M. Hirahata","raw_affiliation_strings":["Center for Information Biology and DNA Data Bank of Japan National Institute of Genetics and Sokendai, Shizuoka, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Information Biology and DNA Data Bank of Japan National Institute of Genetics and Sokendai, Shizuoka, Japan","institution_ids":["https://openalex.org/I47232531"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074203320","display_name":"Takuya Abe","orcid":"https://orcid.org/0000-0001-5298-082X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"T. Abe","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056192178","display_name":"Naoto Tanaka","orcid":"https://orcid.org/0000-0001-7312-0239"},"institutions":[{"id":"https://openalex.org/I74801974","display_name":"The University of Tokyo","ror":"https://ror.org/057zh3y96","country_code":"JP","type":"education","lineage":["https://openalex.org/I74801974"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"N. Tanaka","raw_affiliation_strings":["1Faculty of Pharmaceutical Sciences, Tokyo University of ScienceChiba, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1Faculty of Pharmaceutical Sciences, Tokyo University of ScienceChiba, Japan","institution_ids":["https://openalex.org/I74801974"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051621651","display_name":"Yasuhiro Kuwana","orcid":null},"institutions":[{"id":"https://openalex.org/I2252096349","display_name":"Fujitsu (Japan)","ror":"https://ror.org/038e2g226","country_code":"JP","type":"company","lineage":["https://openalex.org/I2252096349"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Y. Kuwana","raw_affiliation_strings":["2Life Science Systems Division, Fujitsu LimitedTokyo, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"2Life Science Systems Division, Fujitsu LimitedTokyo, Japan","institution_ids":["https://openalex.org/I2252096349"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019978984","display_name":"Yasumasa Shigemoto","orcid":null},"institutions":[{"id":"https://openalex.org/I2252096349","display_name":"Fujitsu (Japan)","ror":"https://ror.org/038e2g226","country_code":"JP","type":"company","lineage":["https://openalex.org/I2252096349"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Y. Shigemoto","raw_affiliation_strings":["2Life Science Systems Division, Fujitsu LimitedTokyo, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"2Life Science Systems Division, Fujitsu LimitedTokyo, Japan","institution_ids":["https://openalex.org/I2252096349"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017921849","display_name":"Satoru Miyazaki","orcid":"https://orcid.org/0000-0001-8803-7980"},"institutions":[{"id":"https://openalex.org/I74801974","display_name":"The University of Tokyo","ror":"https://ror.org/057zh3y96","country_code":"JP","type":"education","lineage":["https://openalex.org/I74801974"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"S. Miyazaki","raw_affiliation_strings":["1Faculty of Pharmaceutical Sciences, Tokyo University of ScienceChiba, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1Faculty of Pharmaceutical Sciences, Tokyo University of ScienceChiba, Japan","institution_ids":["https://openalex.org/I74801974"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101401420","display_name":"Y. Suzuki","orcid":"https://orcid.org/0000-0002-5732-4888"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Y. Suzuki","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5029713640","display_name":"Hideaki Sugawara","orcid":"https://orcid.org/0000-0002-1278-6317"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"H. Sugawara","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":1.6647,"has_fulltext":false,"cited_by_count":23,"citation_normalized_percentile":{"value":0.86912361,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"35","issue":"Database","first_page":"D339","last_page":"D342"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10494","display_name":"Plant Virus Research Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10494","display_name":"Plant Virus Research Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genbank","display_name":"GenBank","score":0.8591297268867493},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.8301593065261841},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7647620439529419},{"id":"https://openalex.org/keywords/virus","display_name":"Virus","score":0.45180028676986694},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.45002323389053345},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3693719506263733},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.34792256355285645},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.34438663721084595},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.11119478940963745}],"concepts":[{"id":"https://openalex.org/C79029880","wikidata":"https://www.wikidata.org/wiki/Q901755","display_name":"GenBank","level":3,"score":0.8591297268867493},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.8301593065261841},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7647620439529419},{"id":"https://openalex.org/C2522874641","wikidata":"https://www.wikidata.org/wiki/Q808","display_name":"Virus","level":2,"score":0.45180028676986694},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.45002323389053345},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3693719506263733},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.34792256355285645},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.34438663721084595},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.11119478940963745}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":6,"locations":[{"id":"doi:10.1093/nar/gkl1004","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkl1004","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:17158166","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17158166","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.628.5733","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.628.5733","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/content/early/2006/12/07/nar.gkl1004.full-text-lowres.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.629.505","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.629.505","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/content/early/2006/12/07/nar.gkl1004.full.pdf","raw_type":"text"},{"id":"pmh:oai:europepmc.org:414338","is_oa":true,"landing_page_url":"http://europepmc.org/pmc/articles/PMC1781101","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:1781101","is_oa":true,"landing_page_url":"http://doi.org/10.1093/nar/gkl1004","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkl1004","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkl1004","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/17","score":0.6200000047683716,"display_name":"Partnerships for the goals"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320334789","display_name":"Japan Science and Technology Agency","ror":"https://ror.org/00097mb19"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":11,"referenced_works":["https://openalex.org/W1532331378","https://openalex.org/W1947111251","https://openalex.org/W1968872877","https://openalex.org/W2025476381","https://openalex.org/W2055043387","https://openalex.org/W2056110883","https://openalex.org/W2074534580","https://openalex.org/W2133054458","https://openalex.org/W2133883537","https://openalex.org/W2149133482","https://openalex.org/W2150722107"],"related_works":["https://openalex.org/W1993070549","https://openalex.org/W4250169950","https://openalex.org/W1906885765","https://openalex.org/W4232951075","https://openalex.org/W4386946098","https://openalex.org/W4238968199","https://openalex.org/W4240231372","https://openalex.org/W4256072927","https://openalex.org/W4212865600","https://openalex.org/W4256333965"],"abstract_inverted_index":{"Genome":[0],"Information":[1],"Broker":[2],"for":[3,60],"Viruses":[4],"(GIB-V)":[5],"is":[6,49,73],"a":[7,76],"comprehensive":[8],"virus":[9,17,68,107],"genome/segment":[10,61,108],"database.":[11],"We":[12],"extracted":[13],"18":[14],"418":[15],"complete":[16],"genomes/segments":[18],"from":[19],"the":[20,91,99,103,114],"International":[21],"Nucleotide":[22],"Sequence":[23],"Database":[24],"Collaboration":[25],"(INSDC,":[26],"http://www.insdc.org/)":[27],"by":[28,113],"DNA":[29],"Data":[30],"Bank":[31],"of":[32,46,66,102],"Japan":[33],"(DDBJ),":[34],"EMBL":[35],"and":[36,38,80],"GenBank":[37],"stored":[39,69],"them":[40],"in":[41,70,87],"our":[42],"system.":[43],"The":[44],"list":[45,88],"registered":[47],"viruses":[48],"arranged":[50],"hierarchically":[51],"according":[52],"to":[53],"taxonomy.":[54],"Keyword":[55],"searches":[56],"can":[57,94,110,119],"be":[58,95,111,120],"performed":[59],"data":[62,109],"or":[63,86],"biological":[64],"features":[65],"any":[67],"GIB-V.":[71],"GIB-V":[72,115,118],"equipped":[74],"with":[75,98],"BLAST":[77,92],"search":[78,81],"function,":[79],"results":[82,93],"are":[83],"displayed":[84],"graphically":[85],"form.":[89],"Moreover,":[90],"used":[96],"online":[97],"ClustalW":[100],"feature":[101],"DDBJ.":[104],"All":[105],"available":[106],"collected":[112],"download":[116],"function.":[117],"accessed":[121],"at":[122,125],"no":[123],"charge":[124],"http://gib-v.genes.nig.ac.jp/.":[126]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":2},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
