{"id":"https://openalex.org/W2093245824","doi":"https://doi.org/10.1093/nar/gkl071","title":"PupaSuite: finding functional single nucleotide polymorphisms for large-scale genotyping purposes","display_name":"PupaSuite: finding functional single nucleotide polymorphisms for large-scale genotyping purposes","publication_year":2006,"publication_date":"2006-07-01","ids":{"openalex":"https://openalex.org/W2093245824","doi":"https://doi.org/10.1093/nar/gkl071","mag":"2093245824","pmid":"https://pubmed.ncbi.nlm.nih.gov/16845085"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkl071","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkl071","pdf_url":"https://academic.oup.com/nar/article-pdf/34/suppl_2/W621/7622703/gkl071.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/34/suppl_2/W621/7622703/gkl071.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5033393201","display_name":"Luc\u00eda Conde","orcid":"https://orcid.org/0000-0001-5180-543X"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"L. Conde","raw_affiliation_strings":["Department of Bioinformatics, Centro de Investigaci\u00f3n Pr\u00edncipe Felipe (CIPF), Valencia, 46013, Spain"],"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics, Centro de Investigaci\u00f3n Pr\u00edncipe Felipe (CIPF), Valencia, 46013, Spain","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041882822","display_name":"Juan M. Vaquerizas","orcid":"https://orcid.org/0000-0002-6583-6541"},"institutions":[{"id":"https://openalex.org/I4210165109","display_name":"Centro de Investigacion Principe Felipe","ror":"https://ror.org/05xr2yq54","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210165109"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"J. M. Vaquerizas","raw_affiliation_strings":["Department of Bioinformatics, Centro de Investigacio n Pr ncipe Felipe (CIPF), Valencia, 46013, Spain,","Department of Bioinformatics, Centro de Investigacio \u00b4n Pr\u0131 \u00b4ncipe Felipe (CIPF), Valencia, 46013, Spain,"],"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics, Centro de Investigacio n Pr ncipe Felipe (CIPF), Valencia, 46013, Spain,","institution_ids":["https://openalex.org/I4210165109"]},{"raw_affiliation_string":"Department of Bioinformatics, Centro de Investigacio \u00b4n Pr\u0131 \u00b4ncipe Felipe (CIPF), Valencia, 46013, Spain,","institution_ids":["https://openalex.org/I4210165109"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087451958","display_name":"Hern\u00e1n Dopazo","orcid":"https://orcid.org/0000-0001-6125-2357"},"institutions":[{"id":"https://openalex.org/I4210165109","display_name":"Centro de Investigacion Principe Felipe","ror":"https://ror.org/05xr2yq54","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210165109"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"H. Dopazo","raw_affiliation_strings":["Department of Bioinformatics, Centro de Investigacio n Pr ncipe Felipe (CIPF), Valencia, 46013, Spain,","Department of Bioinformatics, Centro de Investigacio \u00b4n Pr\u0131 \u00b4ncipe Felipe (CIPF), Valencia, 46013, Spain,"],"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics, Centro de Investigacio n Pr ncipe Felipe (CIPF), Valencia, 46013, Spain,","institution_ids":["https://openalex.org/I4210165109"]},{"raw_affiliation_string":"Department of Bioinformatics, Centro de Investigacio \u00b4n Pr\u0131 \u00b4ncipe Felipe (CIPF), Valencia, 46013, Spain,","institution_ids":["https://openalex.org/I4210165109"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030130295","display_name":"Leonardo Arbiza","orcid":null},"institutions":[{"id":"https://openalex.org/I4210165109","display_name":"Centro de Investigacion Principe Felipe","ror":"https://ror.org/05xr2yq54","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210165109"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"L. Arbiza","raw_affiliation_strings":["Department of Bioinformatics, Centro de Investigacio n Pr ncipe Felipe (CIPF), Valencia, 46013, Spain,","Department of Bioinformatics, Centro de Investigacio \u00b4n Pr\u0131 \u00b4ncipe Felipe (CIPF), Valencia, 46013, Spain,"],"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics, Centro de Investigacio n Pr ncipe Felipe (CIPF), Valencia, 46013, Spain,","institution_ids":["https://openalex.org/I4210165109"]},{"raw_affiliation_string":"Department of Bioinformatics, Centro de Investigacio \u00b4n Pr\u0131 \u00b4ncipe Felipe (CIPF), Valencia, 46013, Spain,","institution_ids":["https://openalex.org/I4210165109"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068993139","display_name":"Joke Reumers","orcid":"https://orcid.org/0000-0001-5434-6515"},"institutions":[{"id":"https://openalex.org/I13469542","display_name":"Vrije Universiteit Brussel","ror":"https://ror.org/006e5kg04","country_code":"BE","type":"education","lineage":["https://openalex.org/I13469542"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"J. Reumers","raw_affiliation_strings":["Switch laboratory, Flanders Interuniversity Institute for Biotechnology. (VIB), Vrije Universiteit Brussel, Pleinlaan 2, 1050 Brussels, Belgium and"],"affiliations":[{"raw_affiliation_string":"Switch laboratory, Flanders Interuniversity Institute for Biotechnology. (VIB), Vrije Universiteit Brussel, Pleinlaan 2, 1050 Brussels, Belgium and","institution_ids":["https://openalex.org/I13469542"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051751538","display_name":"Fran\u00e7oise Rousseau-Hans","orcid":"https://orcid.org/0000-0002-0382-6815"},"institutions":[{"id":"https://openalex.org/I13469542","display_name":"Vrije Universiteit Brussel","ror":"https://ror.org/006e5kg04","country_code":"BE","type":"education","lineage":["https://openalex.org/I13469542"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"F. Rousseau","raw_affiliation_strings":["Switch laboratory, Flanders Interuniversity Institute for Biotechnology. (VIB), Vrije Universiteit Brussel, Pleinlaan 2, 1050 Brussels, Belgium and"],"affiliations":[{"raw_affiliation_string":"Switch laboratory, Flanders Interuniversity Institute for Biotechnology. (VIB), Vrije Universiteit Brussel, Pleinlaan 2, 1050 Brussels, Belgium and","institution_ids":["https://openalex.org/I13469542"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031589452","display_name":"Joost Schymkowitz","orcid":"https://orcid.org/0000-0003-2020-0168"},"institutions":[{"id":"https://openalex.org/I13469542","display_name":"Vrije Universiteit Brussel","ror":"https://ror.org/006e5kg04","country_code":"BE","type":"education","lineage":["https://openalex.org/I13469542"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"J. Schymkowitz","raw_affiliation_strings":["Switch laboratory, Flanders Interuniversity Institute for Biotechnology. (VIB), Vrije Universiteit Brussel, Pleinlaan 2, 1050 Brussels, Belgium and"],"affiliations":[{"raw_affiliation_string":"Switch laboratory, Flanders Interuniversity Institute for Biotechnology. (VIB), Vrije Universiteit Brussel, Pleinlaan 2, 1050 Brussels, Belgium and","institution_ids":["https://openalex.org/I13469542"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5074140420","display_name":"Joaqu\u0131\u0301n Dopazo","orcid":"https://orcid.org/0000-0003-3318-120X"},"institutions":[{"id":"https://openalex.org/I4210165109","display_name":"Centro de Investigacion Principe Felipe","ror":"https://ror.org/05xr2yq54","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210165109"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"J. Dopazo","raw_affiliation_strings":["Department of Bioinformatics, Centro de Investigacio n Pr ncipe Felipe (CIPF), Valencia, 46013, Spain,","Functional Genomics Node, INB, CIPF Valencia 46013, Spain","Department of Bioinformatics, Centro de Investigacio \u00b4n Pr\u0131 \u00b4ncipe Felipe (CIPF), Valencia, 46013, Spain,"],"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics, Centro de Investigacio n Pr ncipe Felipe (CIPF), Valencia, 46013, Spain,","institution_ids":["https://openalex.org/I4210165109"]},{"raw_affiliation_string":"Functional Genomics Node, INB, CIPF Valencia 46013, Spain","institution_ids":["https://openalex.org/I4210165109"]},{"raw_affiliation_string":"Department of Bioinformatics, Centro de Investigacio \u00b4n Pr\u0131 \u00b4ncipe Felipe (CIPF), Valencia, 46013, Spain,","institution_ids":["https://openalex.org/I4210165109"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5033393201"],"corresponding_institution_ids":[],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":12.6305,"has_fulltext":true,"cited_by_count":202,"citation_normalized_percentile":{"value":0.99000106,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"34","issue":"Web Server","first_page":"W621","last_page":"W625"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.795356035232544},{"id":"https://openalex.org/keywords/single-nucleotide-polymorphism","display_name":"Single-nucleotide polymorphism","score":0.7408143281936646},{"id":"https://openalex.org/keywords/genotyping","display_name":"Genotyping","score":0.6744798421859741},{"id":"https://openalex.org/keywords/selection","display_name":"Selection (genetic algorithm)","score":0.5608279705047607},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.5198884010314941},{"id":"https://openalex.org/keywords/haplotype","display_name":"Haplotype","score":0.5186742544174194},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.48043060302734375},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.45266470313072205},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.4040832221508026},{"id":"https://openalex.org/keywords/genotype","display_name":"Genotype","score":0.24783629179000854},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.22986343502998352},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.13609102368354797},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.09275442361831665}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.795356035232544},{"id":"https://openalex.org/C153209595","wikidata":"https://www.wikidata.org/wiki/Q501128","display_name":"Single-nucleotide polymorphism","level":4,"score":0.7408143281936646},{"id":"https://openalex.org/C31467283","wikidata":"https://www.wikidata.org/wiki/Q912147","display_name":"Genotyping","level":4,"score":0.6744798421859741},{"id":"https://openalex.org/C81917197","wikidata":"https://www.wikidata.org/wiki/Q628760","display_name":"Selection (genetic algorithm)","level":2,"score":0.5608279705047607},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.5198884010314941},{"id":"https://openalex.org/C197754878","wikidata":"https://www.wikidata.org/wiki/Q80711","display_name":"Haplotype","level":4,"score":0.5186742544174194},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.48043060302734375},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.45266470313072205},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4040832221508026},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.24783629179000854},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.22986343502998352},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.13609102368354797},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.09275442361831665},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C58226133","wikidata":"https://www.wikidata.org/wiki/Q1324199","display_name":"Pulmonary surfactant","level":2,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C55352822","wikidata":"https://www.wikidata.org/wiki/Q5558978","display_name":"Gibbs isotherm","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006239","descriptor_name":"Haplotypes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006239","descriptor_name":"Haplotypes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006239","descriptor_name":"Haplotypes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015810","descriptor_name":"Linkage Disequilibrium","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015810","descriptor_name":"Linkage Disequilibrium","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015810","descriptor_name":"Linkage Disequilibrium","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1093/nar/gkl071","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkl071","pdf_url":"https://academic.oup.com/nar/article-pdf/34/suppl_2/W621/7622703/gkl071.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:16845085","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/16845085","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:eprints.ucl.ac.uk.OAI2:1482872","is_oa":false,"landing_page_url":"http://discovery.ucl.ac.uk/1482872/","pdf_url":null,"source":{"id":"https://openalex.org/S4306400024","display_name":"UCL Discovery (University College London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I45129253","host_organization_name":"University College London","host_organization_lineage":["https://openalex.org/I45129253"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"   NUCLEIC ACIDS RESEARCH , 34    W621-W625.   (2006)      ","raw_type":"Article"},{"id":"pmh:oai:europepmc.org:338401","is_oa":false,"landing_page_url":"http://europepmc.org/pmc/articles/PMC1538854","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:lirias2repo.kuleuven.be:123456789/247046","is_oa":true,"landing_page_url":"http://gateway.isiknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=DOISource&SrcApp=PRODUCT_NAME&KeyAID=10.1093%2Fnar%2Fgkl071&DestApp=DOI&SrcAppSID=APP_SID&SrcJTitle=WURS_TITLE","pdf_url":null,"source":{"id":"https://openalex.org/S4306401954","display_name":"Lirias (KU Leuven)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I99464096","host_organization_name":"KU Leuven","host_organization_lineage":["https://openalex.org/I99464096"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic acids research, vol. 34 (Web Server issue), (W621-W625)","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:pubmedcentral.nih.gov:1538854","is_oa":true,"landing_page_url":"http://doi.org/10.1093/nar/gkl071","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkl071","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkl071","pdf_url":"https://academic.oup.com/nar/article-pdf/34/suppl_2/W621/7622703/gkl071.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9","score":0.5600000023841858}],"awards":[],"funders":[{"id":"https://openalex.org/F4320321837","display_name":"Ministerio de Econom\u00eda y Competitividad","ror":"https://ror.org/034900433"},{"id":"https://openalex.org/F4320323113","display_name":"Banco Bilbao Vizcaya Argentaria","ror":"https://ror.org/0537dnd74"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2093245824.pdf","grobid_xml":"https://content.openalex.org/works/W2093245824.grobid-xml"},"referenced_works_count":32,"referenced_works":["https://openalex.org/W1551600243","https://openalex.org/W1973769499","https://openalex.org/W1985849948","https://openalex.org/W1994458586","https://openalex.org/W2014978182","https://openalex.org/W2023490488","https://openalex.org/W2027839322","https://openalex.org/W2029549914","https://openalex.org/W2042413629","https://openalex.org/W2044740902","https://openalex.org/W2046508931","https://openalex.org/W2057998009","https://openalex.org/W2062699991","https://openalex.org/W2063318299","https://openalex.org/W2085344563","https://openalex.org/W2096525273","https://openalex.org/W2105585336","https://openalex.org/W2108514550","https://openalex.org/W2118675686","https://openalex.org/W2119326915","https://openalex.org/W2119632499","https://openalex.org/W2142890842","https://openalex.org/W2149195137","https://openalex.org/W2152664025","https://openalex.org/W2155635136","https://openalex.org/W2160364329","https://openalex.org/W2161741985","https://openalex.org/W2162530578","https://openalex.org/W2170565120","https://openalex.org/W2217809488","https://openalex.org/W4239678514","https://openalex.org/W4248160505"],"related_works":["https://openalex.org/W2378369506","https://openalex.org/W3146762847","https://openalex.org/W2398263405","https://openalex.org/W2056886854","https://openalex.org/W2025446304","https://openalex.org/W2353370357","https://openalex.org/W2806032235","https://openalex.org/W2166354960","https://openalex.org/W1888102361","https://openalex.org/W1499399347"],"abstract_inverted_index":{"We":[0],"have":[1,107],"developed":[2],"a":[3,32,42,50],"web":[4,112],"tool,":[5],"PupaSuite,":[6],"for":[7,55],"the":[8,24,64,77],"selection":[9],"of":[10,26,34,45,60,66,79,91,94],"single":[11],"nucleotide":[12],"polymorphisms":[13,95],"(SNPs)":[14],"with":[15,85],"potential":[16],"phenotypic":[17],"effect,":[18],"specifically":[19],"oriented":[20],"to":[21,48,82],"help":[22],"in":[23],"design":[25],"large-scale":[27],"genotyping":[28],"projects.":[29],"PupaSuite":[30,111],"uses":[31,100],"collection":[33],"data":[35,81],"on":[36],"SNPs":[37],"from":[38],"heterogeneous":[39],"sources":[40],"and":[41,52,68,71,118],"large":[43],"number":[44],"pre-calculated":[46],"predictions":[47,106],"offer":[49],"flexible":[51],"intuitive":[53],"interface":[54,113],"selecting":[56],"an":[57],"optimal":[58],"set":[59],"SNPs.":[61],"It":[62],"improves":[63],"functionality":[65],"PupaSNP":[67],"PupasView":[69],"programs":[70],"implements":[72],"new":[73,89],"facilities":[74],"such":[75],"as":[76],"analysis":[78],"user's":[80],"derive":[83],"haplotypes":[84],"functional":[86],"information.":[87,102],"A":[88],"estimator":[90],"putative":[92],"effect":[93],"has":[96],"been":[97,108],"included":[98],"that":[99],"evolutionary":[101],"Also":[103],"SNPeffect":[104],"database":[105],"included.":[109],"The":[110],"is":[114],"accessible":[115],"through":[116,119],"http://pupasuite.bioinfo.cipf.es":[117],"http://www.pupasnp.org.":[120]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":9},{"year":2014,"cited_by_count":19},{"year":2013,"cited_by_count":22},{"year":2012,"cited_by_count":19}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
