{"id":"https://openalex.org/W2149585737","doi":"https://doi.org/10.1093/nar/gkl066","title":"EGassembler: online bioinformatics service for large-scale processing, clustering and assembling ESTs and genomic DNA fragments","display_name":"EGassembler: online bioinformatics service for large-scale processing, clustering and assembling ESTs and genomic DNA fragments","publication_year":2006,"publication_date":"2006-07-01","ids":{"openalex":"https://openalex.org/W2149585737","doi":"https://doi.org/10.1093/nar/gkl066","mag":"2149585737","pmid":"https://pubmed.ncbi.nlm.nih.gov/16845049"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkl066","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkl066","pdf_url":"https://academic.oup.com/nar/article-pdf/34/suppl_2/W459/7622681/gkl066.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/34/suppl_2/W459/7622681/gkl066.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5030421501","display_name":"Ali Masoudi\u2010Nejad","orcid":"https://orcid.org/0000-0003-0659-5183"},"institutions":[{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]},{"id":"https://openalex.org/I4399598384","display_name":"Kyoto University Institute for Chemical Research","ror":"https://ror.org/0349bbg69","country_code":null,"type":"facility","lineage":["https://openalex.org/I22299242","https://openalex.org/I4399598384"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"A. Masoudi-Nejad","raw_affiliation_strings":["Laboratory of Bioknowledge Systems, Bioinformatics Center, Institute for Chemical Research, Kyoto University, Gokasho Uji, Kyoto 611-0011, Japan. amasoudi@kais.kyoto-u.ac.jp","Laboratory of Bioknowledge Systems, Bioinformatics Center, Institute for Chemical Research, Kyoto University, Gokasho Uji, Kyoto 611-0011, Japan,","Laboratory of Plant Genetics, Division of Applied Bioscience, Kyoto University, Kyoto 606-8502, Japan,"],"affiliations":[{"raw_affiliation_string":"Laboratory of Bioknowledge Systems, Bioinformatics Center, Institute for Chemical Research, Kyoto University, Gokasho Uji, Kyoto 611-0011, Japan. amasoudi@kais.kyoto-u.ac.jp","institution_ids":["https://openalex.org/I22299242"]},{"raw_affiliation_string":"Laboratory of Bioknowledge Systems, Bioinformatics Center, Institute for Chemical Research, Kyoto University, Gokasho Uji, Kyoto 611-0011, Japan,","institution_ids":["https://openalex.org/I22299242","https://openalex.org/I4399598384"]},{"raw_affiliation_string":"Laboratory of Plant Genetics, Division of Applied Bioscience, Kyoto University, Kyoto 606-8502, Japan,","institution_ids":["https://openalex.org/I22299242"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019139119","display_name":"K. Tonomura","orcid":null},"institutions":[{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]},{"id":"https://openalex.org/I4399598384","display_name":"Kyoto University Institute for Chemical Research","ror":"https://ror.org/0349bbg69","country_code":null,"type":"facility","lineage":["https://openalex.org/I22299242","https://openalex.org/I4399598384"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"K. Tonomura","raw_affiliation_strings":["Laboratory of Bioknowledge Systems, Bioinformatics Center, Institute for Chemical Research, Kyoto University, Gokasho Uji, Kyoto 611-0011, Japan,"],"affiliations":[{"raw_affiliation_string":"Laboratory of Bioknowledge Systems, Bioinformatics Center, Institute for Chemical Research, Kyoto University, Gokasho Uji, Kyoto 611-0011, Japan,","institution_ids":["https://openalex.org/I22299242","https://openalex.org/I4399598384"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039336067","display_name":"Shuichi Kawashima","orcid":"https://orcid.org/0000-0001-7883-3756"},"institutions":[{"id":"https://openalex.org/I74801974","display_name":"The University of Tokyo","ror":"https://ror.org/057zh3y96","country_code":"JP","type":"education","lineage":["https://openalex.org/I74801974"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"S. Kawashima","raw_affiliation_strings":["Laboratory of Genome Database, Human Genome Center, University of Tokyo, Tokyo 108-8639, Japan and"],"affiliations":[{"raw_affiliation_string":"Laboratory of Genome Database, Human Genome Center, University of Tokyo, Tokyo 108-8639, Japan and","institution_ids":["https://openalex.org/I74801974"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036198187","display_name":"Yuki Moriya","orcid":"https://orcid.org/0000-0001-8195-5893"},"institutions":[{"id":"https://openalex.org/I4399598384","display_name":"Kyoto University Institute for Chemical Research","ror":"https://ror.org/0349bbg69","country_code":null,"type":"facility","lineage":["https://openalex.org/I22299242","https://openalex.org/I4399598384"]},{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Y. Moriya","raw_affiliation_strings":["Laboratory of Bioknowledge Systems, Bioinformatics Center, Institute for Chemical Research, Kyoto University, Gokasho Uji, Kyoto 611-0011, Japan,"],"affiliations":[{"raw_affiliation_string":"Laboratory of Bioknowledge Systems, Bioinformatics Center, Institute for Chemical Research, Kyoto University, Gokasho Uji, Kyoto 611-0011, Japan,","institution_ids":["https://openalex.org/I22299242","https://openalex.org/I4399598384"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002282550","display_name":"Masashi Suzuki","orcid":"https://orcid.org/0000-0002-7218-0923"},"institutions":[{"id":"https://openalex.org/I4210143417","display_name":"Public Works Research Institute","ror":"https://ror.org/04b8j4a33","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210143417"]},{"id":"https://openalex.org/I65143321","display_name":"Hitachi (Japan)","ror":"https://ror.org/02exqgm79","country_code":"JP","type":"company","lineage":["https://openalex.org/I65143321"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"M. Suzuki","raw_affiliation_strings":["Hitachi Government & Public Corporation System Engineering, Ltd. 4-18, Tokyo 2-Chome, Koto-ku, Tokyo 135-8633, Japan"],"affiliations":[{"raw_affiliation_string":"Hitachi Government & Public Corporation System Engineering, Ltd. 4-18, Tokyo 2-Chome, Koto-ku, Tokyo 135-8633, Japan","institution_ids":["https://openalex.org/I4210143417","https://openalex.org/I65143321"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020657282","display_name":"Masumi Itoh","orcid":null},"institutions":[{"id":"https://openalex.org/I4399598384","display_name":"Kyoto University Institute for Chemical Research","ror":"https://ror.org/0349bbg69","country_code":null,"type":"facility","lineage":["https://openalex.org/I22299242","https://openalex.org/I4399598384"]},{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"M. Itoh","raw_affiliation_strings":["Laboratory of Bioknowledge Systems, Bioinformatics Center, Institute for Chemical Research, Kyoto University, Gokasho Uji, Kyoto 611-0011, Japan,"],"affiliations":[{"raw_affiliation_string":"Laboratory of Bioknowledge Systems, Bioinformatics Center, Institute for Chemical Research, Kyoto University, Gokasho Uji, Kyoto 611-0011, Japan,","institution_ids":["https://openalex.org/I22299242","https://openalex.org/I4399598384"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058022821","display_name":"Minoru Kanehisa","orcid":"https://orcid.org/0000-0001-6123-540X"},"institutions":[{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]},{"id":"https://openalex.org/I4399598384","display_name":"Kyoto University Institute for Chemical Research","ror":"https://ror.org/0349bbg69","country_code":null,"type":"facility","lineage":["https://openalex.org/I22299242","https://openalex.org/I4399598384"]},{"id":"https://openalex.org/I74801974","display_name":"The University of Tokyo","ror":"https://ror.org/057zh3y96","country_code":"JP","type":"education","lineage":["https://openalex.org/I74801974"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"M. Kanehisa","raw_affiliation_strings":["Laboratory of Bioknowledge Systems, Bioinformatics Center, Institute for Chemical Research, Kyoto University, Gokasho Uji, Kyoto 611-0011, Japan,","Laboratory of Genome Database, Human Genome Center, University of Tokyo, Tokyo 108-8639, Japan and"],"affiliations":[{"raw_affiliation_string":"Laboratory of Bioknowledge Systems, Bioinformatics Center, Institute for Chemical Research, Kyoto University, Gokasho Uji, Kyoto 611-0011, Japan,","institution_ids":["https://openalex.org/I22299242","https://openalex.org/I4399598384"]},{"raw_affiliation_string":"Laboratory of Genome Database, Human Genome Center, University of Tokyo, Tokyo 108-8639, Japan and","institution_ids":["https://openalex.org/I74801974"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037461731","display_name":"Tetsuya Endo","orcid":"https://orcid.org/0000-0003-4278-5689"},"institutions":[{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"T. Endo","raw_affiliation_strings":["Laboratory of Plant Genetics, Division of Applied Bioscience, Kyoto University, Kyoto 606-8502, Japan,"],"affiliations":[{"raw_affiliation_string":"Laboratory of Plant Genetics, Division of Applied Bioscience, Kyoto University, Kyoto 606-8502, Japan,","institution_ids":["https://openalex.org/I22299242"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5006019084","display_name":"Susumu Goto","orcid":"https://orcid.org/0000-0001-7625-5438"},"institutions":[{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]},{"id":"https://openalex.org/I4399598384","display_name":"Kyoto University Institute for Chemical Research","ror":"https://ror.org/0349bbg69","country_code":null,"type":"facility","lineage":["https://openalex.org/I22299242","https://openalex.org/I4399598384"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"S. Goto","raw_affiliation_strings":["Laboratory of Bioknowledge Systems, Bioinformatics Center, Institute for Chemical Research, Kyoto University, Gokasho Uji, Kyoto 611-0011, Japan,"],"affiliations":[{"raw_affiliation_string":"Laboratory of Bioknowledge Systems, Bioinformatics Center, Institute for Chemical Research, Kyoto University, Gokasho Uji, Kyoto 611-0011, Japan,","institution_ids":["https://openalex.org/I22299242","https://openalex.org/I4399598384"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5030421501"],"corresponding_institution_ids":["https://openalex.org/I22299242","https://openalex.org/I4399598384"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":4.3591,"has_fulltext":true,"cited_by_count":169,"citation_normalized_percentile":{"value":0.95035867,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"34","issue":"Web Server","first_page":"W459","last_page":"W462"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9918000102043152,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.9447520971298218},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.6213535666465759},{"id":"https://openalex.org/keywords/genomic-dna","display_name":"genomic DNA","score":0.5517687797546387},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5397039651870728},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.5389429330825806},{"id":"https://openalex.org/keywords/scale","display_name":"Scale (ratio)","score":0.49094322323799133},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.4629097580909729},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.4527287483215332},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3817954361438751},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.08333733677864075},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.07765457034111023}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.9447520971298218},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.6213535666465759},{"id":"https://openalex.org/C17757408","wikidata":"https://www.wikidata.org/wiki/Q4135516","display_name":"genomic DNA","level":3,"score":0.5517687797546387},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5397039651870728},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.5389429330825806},{"id":"https://openalex.org/C2778755073","wikidata":"https://www.wikidata.org/wiki/Q10858537","display_name":"Scale (ratio)","level":2,"score":0.49094322323799133},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4629097580909729},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.4527287483215332},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3817954361438751},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.08333733677864075},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.07765457034111023},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020224","descriptor_name":"Expressed Sequence Tags","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020224","descriptor_name":"Expressed Sequence Tags","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020224","descriptor_name":"Expressed Sequence Tags","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gkl066","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkl066","pdf_url":"https://academic.oup.com/nar/article-pdf/34/suppl_2/W459/7622681/gkl066.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:16845049","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/16845049","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:europepmc.org:338329","is_oa":false,"landing_page_url":"http://europepmc.org/pmc/articles/PMC1538775","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:1538775","is_oa":true,"landing_page_url":"http://doi.org/10.1093/nar/gkl066","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkl066","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkl066","pdf_url":"https://academic.oup.com/nar/article-pdf/34/suppl_2/W459/7622681/gkl066.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Responsible consumption and production","score":0.4099999964237213,"id":"https://metadata.un.org/sdg/12"}],"awards":[{"id":"https://openalex.org/G1165140526","display_name":"Analysis of Structure and Dynamics of Biological Information Networks","funder_award_id":"17017019","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G1197677136","display_name":null,"funder_award_id":"a Grant-in-Aid for Scientific Research (A) (No. 1","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G2983449479","display_name":null,"funder_award_id":"Scientific Research","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G3236194794","display_name":null,"funder_award_id":"Grant-in-Aid","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G3459562248","display_name":null,"funder_award_id":"Grant","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G3764346968","display_name":"\u6771\u4eac\u6e7e\u6cbf\u5cb8\u306e\u571f\u5730\u9020\u6210\u306e\u5730\u7406\u5b66\u7684\u7814\u7a76\u2015\u660e\u6cbb\u4ee5\u5f8c\u306e\u5834\u5408","funder_award_id":"17017","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G4269490780","display_name":null,"funder_award_id":"Grant-in-Aid for Scientific Research (A)","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G4392852050","display_name":"\u9999\u5ddd\u6771\u90e8\u306b\u304a\u3051\u308b\u7e04\u6587\u6d77\u9032\u306b\u3064\u3044\u3066","funder_award_id":"23066","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G4577404222","display_name":"\u846f\u57f9\u990a\u6cd5\u306b\u3088\u308b disomic haploid (n+1) \u30b7\u30ea\u30fc\u30ba\u306e\u80b2\u6210","funder_award_id":"066001","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G4764645121","display_name":"Backbone Database for Understanding the Biological Systems","funder_award_id":"17020005","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G4874944895","display_name":null,"funder_award_id":"-in-Aid","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G6214486782","display_name":null,"funder_award_id":"Kyoto University","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G7167128334","display_name":null,"funder_award_id":"Grant-in-Aid for Scientific Researc","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G7170925704","display_name":"\u90e1\u5f79\u6240\u4f4d\u7f6e\u306e\u653f\u6cbb\u5730\u7406\u7684\u7814\u7a76","funder_award_id":"17019","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G7337825077","display_name":null,"funder_award_id":"Grant-in-Aid for Sc","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G7752643416","display_name":null,"funder_award_id":"Japan","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G8759943101","display_name":null,"funder_award_id":"rant-in-Aid for Scientific Research","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G8952296632","display_name":"\u7d44\u7e54\u57f9\u990a\u5229\u7528\u306b\u3088\u308b\u80b2\u7a2e\u306e\u57fa\u790e\u7814\u7a76","funder_award_id":"66001","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G895899434","display_name":null,"funder_award_id":"17020","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"}],"funders":[{"id":"https://openalex.org/F4320334764","display_name":"Japan Society for the Promotion of Science","ror":"https://ror.org/00hhkn466"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2149585737.pdf","grobid_xml":"https://content.openalex.org/works/W2149585737.grobid-xml"},"referenced_works_count":18,"referenced_works":["https://openalex.org/W1966585515","https://openalex.org/W1987820419","https://openalex.org/W2033711017","https://openalex.org/W2041902006","https://openalex.org/W2088706346","https://openalex.org/W2094448442","https://openalex.org/W2096525273","https://openalex.org/W2114049512","https://openalex.org/W2121016876","https://openalex.org/W2142605306","https://openalex.org/W2158810446","https://openalex.org/W2159549123","https://openalex.org/W2164395223","https://openalex.org/W2165674132","https://openalex.org/W2166265186","https://openalex.org/W4232543784","https://openalex.org/W4245803912","https://openalex.org/W6608097372"],"related_works":["https://openalex.org/W2804364458","https://openalex.org/W4298130764","https://openalex.org/W2132641928","https://openalex.org/W2090259340","https://openalex.org/W4310225030","https://openalex.org/W2083665254","https://openalex.org/W2393816671","https://openalex.org/W1534720161","https://openalex.org/W2382592496","https://openalex.org/W2367024683"],"abstract_inverted_index":{"Expressed":[0],"sequence":[1,195],"tag":[2],"(EST)":[3],"sequencing":[4,26],"has":[5],"proven":[6],"to":[7,34,145,149,154,158,166,171,173,184,197],"be":[8,132,143],"an":[9,67,180,192],"economically":[10],"feasible":[11],"alternative":[12],"for":[13,31,45,49,76,109,194],"gene":[14],"discovery":[15],"in":[16,134,187],"species":[17],"lacking":[18],"a":[19,42,46,62,72,102,120,125,135],"draft":[20],"genome":[21],"sequence.":[22],"Ongoing":[23],"large-scale":[24,110],"EST":[25,37],"projects":[27],"feel":[28],"the":[29,100,156],"need":[30],"bioinformatics":[32,182,198],"tools":[33],"facilitate":[35,150],"uniform":[36],"handling.":[38],"This":[39],"brings":[40],"about":[41],"renewed":[43],"importance":[44],"universal":[47],"tool":[48,75,183],"processing":[50],"and":[51,85,89,98,112,116,160,170],"functional":[52],"annotation":[53],"of":[54,57,87,129,138],"large":[55,127],"sets":[56],"ESTs.":[58],"EGassembler":[59],"(http://egassembler.hgc.jp/)":[60],"is":[61,95],"web":[63,93,107],"server,":[64],"which":[65],"provides":[66,99,179],"automated":[68],"as":[69,71,189,191],"well":[70,190],"user-customized":[73],"analysis":[74,169],"cleaning,":[77],"repeat":[78],"masking,":[79,83],"vector":[80],"trimming,":[81],"organelle":[82],"clustering":[84,115],"assembling":[86],"ESTs":[88,111],"genomic":[90,113],"fragments.":[91],"The":[92,140,177],"server":[94],"publicly":[96],"available":[97],"community":[101],"unique":[103],"all-in-one":[104],"online":[105],"application":[106],"service":[108,178],"DNA":[114],"assembling.":[117],"Running":[118],"on":[119],"Sun":[121],"Fire":[122],"15K":[123],"supercomputer,":[124],"significantly":[126],"volume":[128],"data":[130],"can":[131,142],"processed":[133],"short":[136],"period":[137],"time.":[139],"results":[141],"used":[144],"functionally":[146],"annotate":[147],"genes,":[148],"splice":[151],"alignment":[152],"analysis,":[153],"link":[155],"transcripts":[157],"genetic":[159],"physical":[161],"maps,":[162],"design":[163],"microarray":[164],"chips,":[165],"perform":[167],"transcriptome":[168],"map":[172],"KEGG":[174],"metabolic":[175],"pathways.":[176],"excellent":[181],"research":[185],"groups":[186],"wet-lab":[188],"all-in-one-tool":[193],"handling":[196],"researchers.":[199]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":9},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":6},{"year":2019,"cited_by_count":10},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":9},{"year":2016,"cited_by_count":11},{"year":2015,"cited_by_count":5},{"year":2014,"cited_by_count":8},{"year":2013,"cited_by_count":18},{"year":2012,"cited_by_count":10}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
