{"id":"https://openalex.org/W2067975843","doi":"https://doi.org/10.1093/nar/gkj153","title":"BIOZON: a hub of heterogeneous biological data","display_name":"BIOZON: a hub of heterogeneous biological data","publication_year":2005,"publication_date":"2005-12-28","ids":{"openalex":"https://openalex.org/W2067975843","doi":"https://doi.org/10.1093/nar/gkj153","mag":"2067975843","pmid":"https://pubmed.ncbi.nlm.nih.gov/16381854"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkj153","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkj153","pdf_url":"https://academic.oup.com/nar/article-pdf/34/suppl_1/D235/3926467/gkj153.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/34/suppl_1/D235/3926467/gkj153.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5056511747","display_name":"Aaron Birkland","orcid":null},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"A. Birkland","raw_affiliation_strings":["Cornell University, Ithaca, NY, USA","Cornell Univ, Ithaca, NY, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Cornell University, Ithaca, NY, USA","institution_ids":["https://openalex.org/I205783295"]},{"raw_affiliation_string":"Cornell Univ, Ithaca, NY, USA","institution_ids":["https://openalex.org/I205783295"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5056511747"],"corresponding_institution_ids":["https://openalex.org/I205783295"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":1.7809,"has_fulltext":false,"cited_by_count":48,"citation_normalized_percentile":{"value":0.83663307,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"34","issue":"90001","first_page":"D235","last_page":"D242"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9962999820709229,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9941999912261963,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/uniprot","display_name":"UniProt","score":0.6559087634086609},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6336814761161804},{"id":"https://openalex.org/keywords/biological-data","display_name":"Biological data","score":0.625786542892456},{"id":"https://openalex.org/keywords/genbank","display_name":"GenBank","score":0.5662968158721924},{"id":"https://openalex.org/keywords/protein-data-bank","display_name":"Protein Data Bank","score":0.5369624495506287},{"id":"https://openalex.org/keywords/data-integration","display_name":"Data integration","score":0.4822264611721039},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.42277249693870544},{"id":"https://openalex.org/keywords/biological-database","display_name":"Biological database","score":0.4187059700489044},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4119275212287903},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.32301461696624756},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3144422769546509},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.27918165922164917},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.271090567111969},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.17088845372200012},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.09686025977134705}],"concepts":[{"id":"https://openalex.org/C202264299","wikidata":"https://www.wikidata.org/wiki/Q905695","display_name":"UniProt","level":3,"score":0.6559087634086609},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6336814761161804},{"id":"https://openalex.org/C201797286","wikidata":"https://www.wikidata.org/wiki/Q4914986","display_name":"Biological data","level":2,"score":0.625786542892456},{"id":"https://openalex.org/C79029880","wikidata":"https://www.wikidata.org/wiki/Q901755","display_name":"GenBank","level":3,"score":0.5662968158721924},{"id":"https://openalex.org/C119145174","wikidata":"https://www.wikidata.org/wiki/Q7251429","display_name":"Protein Data Bank","level":3,"score":0.5369624495506287},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.4822264611721039},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.42277249693870544},{"id":"https://openalex.org/C20901353","wikidata":"https://www.wikidata.org/wiki/Q4117139","display_name":"Biological database","level":2,"score":0.4187059700489044},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4119275212287903},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.32301461696624756},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3144422769546509},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.27918165922164917},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.271090567111969},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.17088845372200012},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.09686025977134705},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gkj153","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkj153","pdf_url":"https://academic.oup.com/nar/article-pdf/34/suppl_1/D235/3926467/gkj153.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:16381854","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/16381854","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:europepmc.org:156936","is_oa":false,"landing_page_url":"http://europepmc.org/pmc/articles/PMC1347515","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:1347515","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/1347515","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkj153","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkj153","pdf_url":"https://academic.oup.com/nar/article-pdf/34/suppl_1/D235/3926467/gkj153.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320320290","display_name":"University of Oxford","ror":"https://ror.org/052gg0110"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":25,"referenced_works":["https://openalex.org/W1509844421","https://openalex.org/W1854214752","https://openalex.org/W1968766436","https://openalex.org/W1983594585","https://openalex.org/W1991809396","https://openalex.org/W2003144438","https://openalex.org/W2022058405","https://openalex.org/W2094010958","https://openalex.org/W2097932035","https://openalex.org/W2101351842","https://openalex.org/W2103538877","https://openalex.org/W2118676023","https://openalex.org/W2123280311","https://openalex.org/W2130687290","https://openalex.org/W2137045431","https://openalex.org/W2147809382","https://openalex.org/W2152326664","https://openalex.org/W2158714788","https://openalex.org/W2159482845","https://openalex.org/W2160453515","https://openalex.org/W2160948978","https://openalex.org/W4213149192","https://openalex.org/W4213208922","https://openalex.org/W4245051455","https://openalex.org/W4256647194"],"related_works":["https://openalex.org/W2307569040","https://openalex.org/W2131941936","https://openalex.org/W2022209941","https://openalex.org/W4205671017","https://openalex.org/W2541393756","https://openalex.org/W2060096282","https://openalex.org/W2385643360","https://openalex.org/W2739872940","https://openalex.org/W115596161","https://openalex.org/W1983206747"],"abstract_inverted_index":{"Biological":[0],"entities":[1],"are":[2,66,83],"strongly":[3],"related":[4],"and":[5,19,25,55,58,138,150,167,190],"mutually":[6],"dependent":[7],"on":[8,68,179,195],"each":[9,86],"other.":[10],"Therefore,":[11],"there":[12],"is":[13,37],"a":[14,38,70,92,99,108],"growing":[15],"need":[16],"to":[17,32,69,186,202],"corroborate":[18],"integrate":[20],"data":[21,45,65,155,159],"from":[22,115,140],"different":[23],"resources":[24],"aspects":[26],"of":[27,79,103,107,197],"biological":[28,40,80],"systems":[29],"in":[30,91],"order":[31],"analyze":[33],"them":[34],"effectively.":[35],"Biozon":[36,120,152],"unified":[39],"database":[41],"that":[42,82,97,111],"integrates":[43,121],"heterogeneous":[44],"types":[46],"such":[47,142,160],"as":[48,143,161],"proteins,":[49],"structures,":[50,135],"domain":[51],"families,":[52],"protein-protein":[53],"interactions":[54,137],"cellular":[56],"pathways,":[57],"establishes":[59],"the":[60,76,104,180,192,198],"relationships":[61],"between":[62],"them.":[63],"All":[64],"integrated":[67],"single":[71],"graph":[72,95,181],"schema":[73],"centered":[74],"around":[75],"non-redundant":[77],"set":[78],"objects":[81],"shared":[84],"by":[85],"source.":[87,118],"This":[88],"integration":[89],"results":[90,193],"highly":[93],"connected":[94],"structure":[96,200],"provides":[98],"more":[100,139],"complete":[101],"picture":[102],"known":[105],"context":[106],"given":[109],"object":[110],"cannot":[112],"be":[113],"determined":[114],"any":[116],"one":[117],"Currently,":[119],"roughly":[122],"2":[123],"million":[124,128,169],"protein":[125,134,165],"sequences,":[126,132],"42":[127],"DNA":[129],"or":[130],"RNA":[131],"32,000":[133],"150,000":[136],"sources":[141],"GenBank,":[144],"UniProt,":[145],"Protein":[146],"Data":[147],"Bank":[148],"(PDB)":[149],"BIND.":[151],"augments":[153],"source":[154],"with":[156],"locally":[157],"derived":[158],"5":[162],"billion":[163],"pairwise":[164],"alignments":[166],"8":[168],"structural":[170],"alignments.":[171],"The":[172],"user":[173],"may":[174],"form":[175,187],"complex":[176],"cross-type":[177],"queries":[178,189],"structure,":[182],"add":[183],"similarity":[184],"relations":[185],"fuzzy":[188],"rank":[191],"based":[194],"analysis":[196],"edge":[199],"similar":[201],"Google":[203],"PageRank,":[204],"online":[205],"at":[206],"Biozon.org.":[207]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":6},{"year":2012,"cited_by_count":4}],"updated_date":"2026-07-30T17:31:21.811387","created_date":"2025-10-10T00:00:00"}
