{"id":"https://openalex.org/W2915985519","doi":"https://doi.org/10.1093/nar/gkj144","title":"The UCSC Genome Browser Database: update 2006","display_name":"The UCSC Genome Browser Database: update 2006","publication_year":2005,"publication_date":"2005-12-28","ids":{"openalex":"https://openalex.org/W2915985519","doi":"https://doi.org/10.1093/nar/gkj144","mag":"2915985519","pmid":"https://pubmed.ncbi.nlm.nih.gov/16381938"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkj144","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkj144","pdf_url":"https://academic.oup.com/nar/article-pdf/34/suppl_1/D590/3926288/gkj144.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/34/suppl_1/D590/3926288/gkj144.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5031905987","display_name":"Angie S. Hinrichs","orcid":"https://orcid.org/0000-0002-1697-1130"},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"A. S. Hinrichs","raw_affiliation_strings":["Center for Biomolecular Science and Engineering, School of Engineering, University of California Santa Cruz (UCSC), Santa Cruz, CA 95064, USA. angie@soe.ucsc.edu"],"affiliations":[{"raw_affiliation_string":"Center for Biomolecular Science and Engineering, School of Engineering, University of California Santa Cruz (UCSC), Santa Cruz, CA 95064, USA. angie@soe.ucsc.edu","institution_ids":["https://openalex.org/I185103710"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5031905987"],"corresponding_institution_ids":["https://openalex.org/I185103710"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":22.1444,"has_fulltext":false,"cited_by_count":1737,"citation_normalized_percentile":{"value":0.99784737,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"34","issue":"90001","first_page":"D590","last_page":"D598"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genome-browser","display_name":"Genome browser","score":0.9421610832214355},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.6667464375495911},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6237677335739136},{"id":"https://openalex.org/keywords/gene-annotation","display_name":"Gene Annotation","score":0.5069079995155334},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.4824731647968292},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.48218005895614624},{"id":"https://openalex.org/keywords/ensembl","display_name":"Ensembl","score":0.47725221514701843},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.4044773578643799},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.38979512453079224},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3447340130805969},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3095307946205139},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2754756808280945}],"concepts":[{"id":"https://openalex.org/C2781148417","wikidata":"https://www.wikidata.org/wiki/Q5533486","display_name":"Genome browser","level":5,"score":0.9421610832214355},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.6667464375495911},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6237677335739136},{"id":"https://openalex.org/C2908923196","wikidata":"https://www.wikidata.org/wiki/Q5205742","display_name":"Gene Annotation","level":4,"score":0.5069079995155334},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.4824731647968292},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.48218005895614624},{"id":"https://openalex.org/C141674004","wikidata":"https://www.wikidata.org/wiki/Q1344256","display_name":"Ensembl","level":5,"score":0.47725221514701843},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.4044773578643799},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.38979512453079224},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3447340130805969},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3095307946205139},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2754756808280945}],"mesh":[{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002140","descriptor_name":"California","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002140","descriptor_name":"California","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002140","descriptor_name":"California","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004285","descriptor_name":"Dogs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004285","descriptor_name":"Dogs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004285","descriptor_name":"Dogs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051381","descriptor_name":"Rats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051381","descriptor_name":"Rats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051381","descriptor_name":"Rats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1093/nar/gkj144","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkj144","pdf_url":"https://academic.oup.com/nar/article-pdf/34/suppl_1/D590/3926288/gkj144.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:16381938","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/16381938","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:europepmc.org:156931","is_oa":false,"landing_page_url":"http://europepmc.org/pmc/articles/PMC1347506","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:1347506","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/1347506","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"},{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/1d67a250-4dc5-11dd-8d9f-000ea68e967b","is_oa":false,"landing_page_url":"https://researchprofiles.ku.dk/da/publications/1d67a250-4dc5-11dd-8d9f-000ea68e967b","pdf_url":null,"source":{"id":"https://openalex.org/S4306401983","display_name":"Research at the University of Copenhagen (University of Copenhagen)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I124055696","host_organization_name":"University of Copenhagen","host_organization_lineage":["https://openalex.org/I124055696"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Hinrichs , A S , Karolchik , D , Baertsch , R , Barber , G P , Bejerano , G , Clawson , H , Diekhans , M , Furey , T S , Harte , R A , Hsu , F , Hillman-Jackson , J , Kuhn , R M , Pedersen , J S , Pohl , A , Raney , B J , Rosenbloom , K R , Siepel , A , Smith , K E , Sugnet , C W , Sultan-Qurraie , A , Thomas , D J , Trumbower , H , Weber , R J , Weirauch , M , Zweig , A S , Haussler , D & Kent , W J 2006 , ' The UCSC Genome Browser Database: update 2006. ' , Nucleic Acids Research , vol. 34 , no. Database issue , pp. D590-8 . https://doi.org/10.1093/nar/gkj144","raw_type":"article"},{"id":"pmh:oai:pure.atira.dk:publications/1d67a250-4dc5-11dd-8d9f-000ea68e967b","is_oa":false,"landing_page_url":"https://curis.ku.dk/portal/da/publications/the-ucsc-genome-browser-database-update-2006(1d67a250-4dc5-11dd-8d9f-000ea68e967b).html","pdf_url":null,"source":{"id":"https://openalex.org/S4306401983","display_name":"Research at the University of Copenhagen (University of Copenhagen)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I124055696","host_organization_name":"University of Copenhagen","host_organization_lineage":["https://openalex.org/I124055696"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Hinrichs , A S , Karolchik , D , Baertsch , R , Barber , G P , Bejerano , G , Clawson , H , Diekhans , M , Furey , T S , Harte , R A , Hsu , F , Hillman-Jackson , J , Kuhn , R M , Pedersen , J S , Pohl , A , Raney , B J , Rosenbloom , K R , Siepel , A , Smith , K E , Sugnet , C W , Sultan-Qurraie , A , Thomas , D J , Trumbower , H , Weber , R J , Weirauch , M , Zweig , A S , Haussler , D & Kent , W J 2006 , ' The UCSC Genome Browser Database: update 2006. ' , Nucleic Acids Research , vol. 34 , no. Database issue , pp. D590-8 . https://doi.org/10.1093/nar/gkj144","raw_type":"article"},{"id":"pmh:oai:pure.atira.dk:publications/c6f1b198-8bf7-4668-a887-d770ce7dbdc3","is_oa":false,"landing_page_url":"https://pure.au.dk/portal/en/publications/c6f1b198-8bf7-4668-a887-d770ce7dbdc3","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Hinrichs, A S, Karolchik, D, Baertsch, R, Barber, G P, Bejerano, G, Clawson, H, Diekhans, M, Furey, T S, Harte, R A, Hsu, F, Hillman-Jackson, J, Kuhn, R M, Pedersen, J S, Pohl, A, Raney, B J, Rosenbloom, K R, Siepel, A, Smith, K E, Sugnet, C W, Sultan-Qurraie, A, Thomas, D J, Trumbower, H, Weber, R J, Weirauch, M, Zweig, A S, Haussler, D, Kent, W J & Pedersen, J S 2006, 'The UCSC Genome Browser Database : update 2006', Nucleic Acids Research, vol. 34, no. Database issue, pp. D590-8. https://doi.org/10.1093/nar/gkj144","raw_type":"info:eu-repo/semantics/publishedVersion"}],"best_oa_location":{"id":"doi:10.1093/nar/gkj144","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkj144","pdf_url":"https://academic.oup.com/nar/article-pdf/34/suppl_1/D590/3926288/gkj144.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320309018","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2915985519.pdf","grobid_xml":"https://content.openalex.org/works/W2915985519.grobid-xml"},"referenced_works_count":58,"referenced_works":["https://openalex.org/W189143987","https://openalex.org/W1491989688","https://openalex.org/W1977828801","https://openalex.org/W1985738984","https://openalex.org/W2013221974","https://openalex.org/W2022756254","https://openalex.org/W2044110911","https://openalex.org/W2055043387","https://openalex.org/W2057998009","https://openalex.org/W2076780928","https://openalex.org/W2077007445","https://openalex.org/W2096144498","https://openalex.org/W2096497741","https://openalex.org/W2103017472","https://openalex.org/W2107903949","https://openalex.org/W2108491719","https://openalex.org/W2108871359","https://openalex.org/W2112132489","https://openalex.org/W2113677672","https://openalex.org/W2115829389","https://openalex.org/W2116753165","https://openalex.org/W2118970397","https://openalex.org/W2119195082","https://openalex.org/W2122598328","https://openalex.org/W2122732537","https://openalex.org/W2124873881","https://openalex.org/W2128016314","https://openalex.org/W2130919037","https://openalex.org/W2131074700","https://openalex.org/W2131736388","https://openalex.org/W2136145671","https://openalex.org/W2136725005","https://openalex.org/W2137257434","https://openalex.org/W2141144953","https://openalex.org/W2141729174","https://openalex.org/W2141828080","https://openalex.org/W2141885858","https://openalex.org/W2142237411","https://openalex.org/W2145191876","https://openalex.org/W2147714160","https://openalex.org/W2149138213","https://openalex.org/W2151318268","https://openalex.org/W2155225302","https://openalex.org/W2155438379","https://openalex.org/W2160649592","https://openalex.org/W2161062388","https://openalex.org/W2164683872","https://openalex.org/W2166458835","https://openalex.org/W2166898290","https://openalex.org/W2168783124","https://openalex.org/W2247766769","https://openalex.org/W4210400672","https://openalex.org/W4230932396","https://openalex.org/W4233912639","https://openalex.org/W4238737563","https://openalex.org/W4240921265","https://openalex.org/W4248160505","https://openalex.org/W4251079740"],"related_works":["https://openalex.org/W3111061871","https://openalex.org/W4309908782","https://openalex.org/W2464717012","https://openalex.org/W4302309198","https://openalex.org/W2096403311","https://openalex.org/W2161069068","https://openalex.org/W4384561511","https://openalex.org/W1976142521","https://openalex.org/W4383032973","https://openalex.org/W4200520333"],"abstract_inverted_index":{"The":[0,54,77,98,117,124,170],"University":[1],"of":[2,18,84,131],"California":[3],"Santa":[4],"Cruz":[5],"Genome":[6,29,78],"Browser":[7,79,100,119],"Database":[8],"(GBD)":[9],"contains":[10],"sequence":[11,35,44,109],"and":[12,24,38,42,51,70,108,129,139,144,161,168,177,181],"annotation":[13],"data":[14,138,175],"for":[15,73,149],"the":[16,75,105],"genomes":[17,153],"about":[19],"a":[20,81,95],"dozen":[21],"vertebrate":[22],"species":[23],"several":[25,134,140],"major":[26],"model":[27],"organisms.":[28],"annotations":[30,85],"typically":[31],"include":[32],"assembly":[33],"data,":[34,110],"composition,":[36],"genes":[37,132],"gene":[39,141],"predictions,":[40],"mRNA":[41],"expressed":[43],"tag":[45],"evidence,":[46],"comparative":[47],"genomics,":[48],"regulation,":[49],"expression":[50,137],"variation":[52],"data.":[53,76],"database":[55,106],"is":[56],"optimized":[57],"to":[58,94,104,165,179],"support":[59],"fast":[60],"interactive":[61],"performance":[62],"with":[63],"web":[64],"tools":[65,157],"that":[66],"provide":[67,162],"powerful":[68],"visualization":[69],"querying":[71],"capabilities":[72],"mining":[74],"displays":[80,121],"wide":[82],"variety":[83],"at":[86,187],"all":[87],"scales":[88],"from":[89],"single":[90],"nucleotide":[91],"level":[92],"up":[93],"full":[96],"chromosome.":[97],"Table":[99],"provides":[101],"direct":[102],"access":[103],"tables":[107],"enabling":[111],"complex":[112],"queries":[113],"on":[114],"genome-wide":[115],"datasets.":[116],"Proteome":[118],"graphically":[120],"protein":[122],"properties.":[123,142],"Gene":[125],"Sorter":[126],"allows":[127],"filtering":[128],"comparison":[130],"by":[133],"metrics":[135],"including":[136],"BLAT":[143],"In":[145],"Silico":[146],"PCR":[147],"search":[148],"sequences":[150],"in":[151,154],"entire":[152],"seconds.":[155],"These":[156],"are":[158],"highly":[159],"integrated":[160],"many":[163],"hyperlinks":[164],"other":[166,182],"databases":[167],"websites.":[169],"GBD,":[171],"browsing":[172],"tools,":[173],"downloadable":[174],"files":[176],"links":[178],"documentation":[180],"information":[183],"can":[184],"be":[185],"found":[186],"http://genome.ucsc.edu/.":[188]},"counts_by_year":[{"year":2026,"cited_by_count":39},{"year":2025,"cited_by_count":252},{"year":2024,"cited_by_count":218},{"year":2023,"cited_by_count":168},{"year":2022,"cited_by_count":131},{"year":2021,"cited_by_count":132},{"year":2020,"cited_by_count":115},{"year":2019,"cited_by_count":115},{"year":2018,"cited_by_count":73},{"year":2017,"cited_by_count":42},{"year":2016,"cited_by_count":44},{"year":2015,"cited_by_count":43},{"year":2014,"cited_by_count":42},{"year":2013,"cited_by_count":34},{"year":2012,"cited_by_count":19}],"updated_date":"2026-03-13T16:22:10.518609","created_date":"2025-10-10T00:00:00"}