{"id":"https://openalex.org/W2143685757","doi":"https://doi.org/10.1093/nar/gkj125","title":"iMOTdb--a comprehensive collection of spatially interacting motifs in proteins","display_name":"iMOTdb--a comprehensive collection of spatially interacting motifs in proteins","publication_year":2005,"publication_date":"2005-12-28","ids":{"openalex":"https://openalex.org/W2143685757","doi":"https://doi.org/10.1093/nar/gkj125","mag":"2143685757","pmid":"https://pubmed.ncbi.nlm.nih.gov/16381866"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkj125","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkj125","pdf_url":"https://academic.oup.com/nar/article-pdf/34/suppl_1/D285/3925961/gkj125.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/34/suppl_1/D285/3925961/gkj125.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5006893514","display_name":"Ganesan Pugalenthi","orcid":"https://orcid.org/0000-0002-5234-5700"},"institutions":[{"id":"https://openalex.org/I194223965","display_name":"National Centre for Biological Sciences","ror":"https://ror.org/03gf8rp76","country_code":"IN","type":"facility","lineage":["https://openalex.org/I11947397","https://openalex.org/I194223965","https://openalex.org/I2799351866","https://openalex.org/I3149292468"]}],"countries":["IN"],"is_corresponding":true,"raw_author_name":"G. Pugalenthi","raw_affiliation_strings":["National Centre for Biological Sciences, Tata Institute of Fundamental Research UAS-GKVK Campus, Bellary Road, Bangalore 560 065, India"],"affiliations":[{"raw_affiliation_string":"National Centre for Biological Sciences, Tata Institute of Fundamental Research UAS-GKVK Campus, Bellary Road, Bangalore 560 065, India","institution_ids":["https://openalex.org/I194223965"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5006893514"],"corresponding_institution_ids":["https://openalex.org/I194223965"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":0.1266,"has_fulltext":true,"cited_by_count":4,"citation_normalized_percentile":{"value":0.5158168,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"34","issue":"90001","first_page":"D285","last_page":"D286"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9833999872207642,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.9305658936500549},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.593349277973175},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3953920006752014},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.3928043842315674}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.9305658936500549},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.593349277973175},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3953920006752014},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.3928043842315674}],"mesh":[{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017124","descriptor_name":"Conserved Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017124","descriptor_name":"Conserved Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017124","descriptor_name":"Conserved Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020816","descriptor_name":"Amino Acid Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020816","descriptor_name":"Amino Acid Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020816","descriptor_name":"Amino Acid Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1093/nar/gkj125","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkj125","pdf_url":"https://academic.oup.com/nar/article-pdf/34/suppl_1/D285/3925961/gkj125.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:16381866","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/16381866","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.276.449","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.276.449","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ftp://ftp.ncbi.nlm.nih.gov/pub/pmc/32/63/Nucleic_Acids_Res_2006_Jan_1_34(Database_issue)_D285-D286.tar.gz","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.879.3900","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.879.3900","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/content/34/suppl_1/D285.full.pdf","raw_type":"text"},{"id":"pmh:oai:pubmedcentral.nih.gov:1347487","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/1347487","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkj125","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkj125","pdf_url":"https://academic.oup.com/nar/article-pdf/34/suppl_1/D285/3925961/gkj125.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","score":0.6899999976158142,"display_name":"Life in Land"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320311904","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08"},{"id":"https://openalex.org/F4320320715","display_name":"Tata Institute of Fundamental Research","ror":"https://ror.org/03ht1xw27"},{"id":"https://openalex.org/F4320335065","display_name":"National Centre for Biological Sciences","ror":"https://ror.org/03gf8rp76"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2143685757.pdf","grobid_xml":"https://content.openalex.org/works/W2143685757.grobid-xml"},"referenced_works_count":26,"referenced_works":["https://openalex.org/W1982871387","https://openalex.org/W1995260859","https://openalex.org/W1997379747","https://openalex.org/W2015180542","https://openalex.org/W2028231353","https://openalex.org/W2045777307","https://openalex.org/W2052840968","https://openalex.org/W2065385636","https://openalex.org/W2085277871","https://openalex.org/W2108067237","https://openalex.org/W2113403117","https://openalex.org/W2117019496","https://openalex.org/W2125595257","https://openalex.org/W2125806930","https://openalex.org/W2130393164","https://openalex.org/W2130479394","https://openalex.org/W2135322665","https://openalex.org/W2140524371","https://openalex.org/W2143173841","https://openalex.org/W2155479906","https://openalex.org/W2160121448","https://openalex.org/W2165495989","https://openalex.org/W2168047961","https://openalex.org/W2177861138","https://openalex.org/W4247193959","https://openalex.org/W4252878612"],"related_works":["https://openalex.org/W2082860237","https://openalex.org/W2119695867","https://openalex.org/W2130076355","https://openalex.org/W1990804418","https://openalex.org/W1993764875","https://openalex.org/W2046158694","https://openalex.org/W2788277189","https://openalex.org/W2013243191","https://openalex.org/W2151865869","https://openalex.org/W2061542922"],"abstract_inverted_index":{"Realization":[0],"of":[1,14,24,41,61,75,78,118,126],"conserved":[2,103,119],"residues":[3,32],"that":[4,95],"represent":[5],"a":[6,76,98],"protein":[7,84,93,138,143],"family":[8],"is":[9],"crucial":[10],"for":[11,20,68,132],"clearer":[12],"understanding":[13],"biological":[15],"function":[16],"as":[17,19,86,88],"well":[18,35,87],"the":[21,59,62,73,124],"better":[22],"recognition":[23],"additional":[25],"members":[26],"in":[27,43,50,82,123],"sequence":[28,109],"databases.":[29,53],"Functionally":[30],"important":[31],"are":[33,48,56,105,121],"recognized":[34],"due":[36],"to":[37,58,97,136],"their":[38,69],"high":[39],"degree":[40],"conservation":[42],"closely":[44],"related":[45,92],"sequences":[46],"and":[47,64,112,141],"annotated":[49],"functional":[51],"motif":[52],"Structural":[54],"motifs":[55,81,104,120,134],"central":[57],"integrity":[60],"fold":[63],"require":[65],"careful":[66],"analysis":[67],"identification.":[70],"We":[71],"report":[72],"availability":[74],"database":[77,129],"spatially":[79],"interacting":[80],"single":[83],"structures":[85,94],"those":[89],"among":[90],"distantly":[91],"belong":[96],"superfamily.":[99],"Spatial":[100],"interactions":[101],"amongst":[102],"automatically":[106],"measured":[107],"using":[108],"similarity":[110],"scores":[111],"distance":[113],"calculations.":[114],"Interactions":[115],"between":[116],"pairs":[117],"described":[122],"form":[125],"pseudoenergies.":[127],"iMOTdb":[128],"provides":[130],"information":[131],"854,488":[133],"corresponding":[135],"60,849":[137],"structural":[139,144],"domains":[140],"22,648":[142],"entries.":[145]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2013,"cited_by_count":1}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
