{"id":"https://openalex.org/W2049114051","doi":"https://doi.org/10.1093/nar/gkj116","title":"ABS: a database of Annotated regulatory Binding Sites from orthologous promoters","display_name":"ABS: a database of Annotated regulatory Binding Sites from orthologous promoters","publication_year":2005,"publication_date":"2005-12-28","ids":{"openalex":"https://openalex.org/W2049114051","doi":"https://doi.org/10.1093/nar/gkj116","mag":"2049114051","pmid":"https://pubmed.ncbi.nlm.nih.gov/16381947"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkj116","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkj116","pdf_url":"https://academic.oup.com/nar/article-pdf/34/suppl_1/D63/3925703/gkj116.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/34/suppl_1/D63/3925703/gkj116.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5046391546","display_name":"Enrique Blanco","orcid":"https://orcid.org/0000-0001-6261-7370"},"institutions":[{"id":"https://openalex.org/I170486558","display_name":"Universitat Pompeu Fabra","ror":"https://ror.org/04n0g0b29","country_code":"ES","type":"education","lineage":["https://openalex.org/I170486558"]},{"id":"https://openalex.org/I2801864671","display_name":"Barcelona Biomedical Research Park","ror":"https://ror.org/05sajct49","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2801864671"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"E. Blanco","raw_affiliation_strings":["Grup de Recerca en Inform\u00e0tica Biom\u00e8dica, Institut Municipal d'Investigaci\u00f3 M\u00e8dica/Universitat Pompeu Fabra/Centre de Regulaci\u00f3 Gen\u00f2mica C/Doctor Aiguader 80, 08003 Barcelona, Spain. eblanco@imim.es","Grup de Recerca en Inform\u00e0tica Biom\u00e8dica, Institut Municipal d'Investigaci\u00f3 M\u00e8dica/Universitat Pompeu Fabra/Centre de Regulaci\u00f3 Gen\u00f2mica C/Doctor Aiguader 80, 08003 Barcelona, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Grup de Recerca en Inform\u00e0tica Biom\u00e8dica, Institut Municipal d'Investigaci\u00f3 M\u00e8dica/Universitat Pompeu Fabra/Centre de Regulaci\u00f3 Gen\u00f2mica C/Doctor Aiguader 80, 08003 Barcelona, Spain. eblanco@imim.es","institution_ids":["https://openalex.org/I170486558"]},{"raw_affiliation_string":"Grup de Recerca en Inform\u00e0tica Biom\u00e8dica, Institut Municipal d'Investigaci\u00f3 M\u00e8dica/Universitat Pompeu Fabra/Centre de Regulaci\u00f3 Gen\u00f2mica C/Doctor Aiguader 80, 08003 Barcelona, Spain","institution_ids":["https://openalex.org/I2801864671"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5046391546"],"corresponding_institution_ids":["https://openalex.org/I170486558","https://openalex.org/I2801864671"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":2.2742,"has_fulltext":false,"cited_by_count":73,"citation_normalized_percentile":{"value":0.87502534,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"34","issue":"90001","first_page":"D63","last_page":"D67"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7898800373077393},{"id":"https://openalex.org/keywords/promoter","display_name":"Promoter","score":0.7316306233406067},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.6760071516036987},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5859760046005249},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5845157504081726},{"id":"https://openalex.org/keywords/dna-binding-site","display_name":"DNA binding site","score":0.5768108367919922},{"id":"https://openalex.org/keywords/binding-site","display_name":"Binding site","score":0.5179504156112671},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.5039193034172058},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.4917135536670685},{"id":"https://openalex.org/keywords/transcription-factor","display_name":"Transcription factor","score":0.4696566164493561},{"id":"https://openalex.org/keywords/genome-browser","display_name":"Genome browser","score":0.4539262652397156},{"id":"https://openalex.org/keywords/sequence-motif","display_name":"Sequence motif","score":0.4466691315174103},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.35961318016052246},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.15247586369514465},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.13585057854652405}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7898800373077393},{"id":"https://openalex.org/C101762097","wikidata":"https://www.wikidata.org/wiki/Q224093","display_name":"Promoter","level":4,"score":0.7316306233406067},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.6760071516036987},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5859760046005249},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5845157504081726},{"id":"https://openalex.org/C3662595","wikidata":"https://www.wikidata.org/wiki/Q5205743","display_name":"DNA binding site","level":5,"score":0.5768108367919922},{"id":"https://openalex.org/C107824862","wikidata":"https://www.wikidata.org/wiki/Q616005","display_name":"Binding site","level":2,"score":0.5179504156112671},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5039193034172058},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.4917135536670685},{"id":"https://openalex.org/C86339819","wikidata":"https://www.wikidata.org/wiki/Q407384","display_name":"Transcription factor","level":3,"score":0.4696566164493561},{"id":"https://openalex.org/C2781148417","wikidata":"https://www.wikidata.org/wiki/Q5533486","display_name":"Genome browser","level":5,"score":0.4539262652397156},{"id":"https://openalex.org/C117745874","wikidata":"https://www.wikidata.org/wiki/Q901612","display_name":"Sequence motif","level":3,"score":0.4466691315174103},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.35961318016052246},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.15247586369514465},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.13585057854652405}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002645","descriptor_name":"Chickens","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002645","descriptor_name":"Chickens","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002645","descriptor_name":"Chickens","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011401","descriptor_name":"Promoter Regions, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011401","descriptor_name":"Promoter Regions, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011401","descriptor_name":"Promoter Regions, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051381","descriptor_name":"Rats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051381","descriptor_name":"Rats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051381","descriptor_name":"Rats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":8,"locations":[{"id":"doi:10.1093/nar/gkj116","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkj116","pdf_url":"https://academic.oup.com/nar/article-pdf/34/suppl_1/D63/3925703/gkj116.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:16381947","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/16381947","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:recercat.cat:2072/213161","is_oa":true,"landing_page_url":"http://hdl.handle.net/10230/13148","pdf_url":null,"source":{"id":"https://openalex.org/S4306402147","display_name":"RECERCAT (Consorci de Serveis Universitaris de Catalunya)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210090028","host_organization_name":"Consorci de Serveis Universitaris de Catalunya","host_organization_lineage":["https://openalex.org/I4210090028"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.897.1073","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.897.1073","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/content/34/suppl_1/D63.full.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.95.4873","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.95.4873","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/cgi/reprint/34/suppl_1/D63.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.99.3457","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.99.3457","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/cgi/screenpdf/34/suppl_1/D63.pdf","raw_type":"text"},{"id":"pmh:oai:europepmc.org:156914","is_oa":false,"landing_page_url":"http://europepmc.org/pmc/articles/PMC1347478","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:1347478","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/1347478","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkj116","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkj116","pdf_url":"https://academic.oup.com/nar/article-pdf/34/suppl_1/D63/3925703/gkj116.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/17","display_name":"Partnerships for the goals","score":0.4399999976158142}],"awards":[],"funders":[{"id":"https://openalex.org/F4320309764","display_name":"Fundaci\u00f3n BBVA","ror":"https://ror.org/01jzs3b90"},{"id":"https://openalex.org/F4320323737","display_name":"Ministerio de Ciencia y Tecnolog\u00eda","ror":"https://ror.org/034900433"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W2049114051.pdf"},"referenced_works_count":20,"referenced_works":["https://openalex.org/W1966833356","https://openalex.org/W1987122345","https://openalex.org/W1996423252","https://openalex.org/W2015471909","https://openalex.org/W2041726559","https://openalex.org/W2051333589","https://openalex.org/W2055043387","https://openalex.org/W2072775378","https://openalex.org/W2075363163","https://openalex.org/W2083479872","https://openalex.org/W2084620487","https://openalex.org/W2106882534","https://openalex.org/W2110291136","https://openalex.org/W2141408320","https://openalex.org/W2144857133","https://openalex.org/W2155144061","https://openalex.org/W2155237411","https://openalex.org/W2158266834","https://openalex.org/W2166898290","https://openalex.org/W4213167074"],"related_works":["https://openalex.org/W1971216836","https://openalex.org/W2146517458","https://openalex.org/W2128402543","https://openalex.org/W2901448061","https://openalex.org/W2124433786","https://openalex.org/W2162836426","https://openalex.org/W2115577355","https://openalex.org/W4306179651","https://openalex.org/W2734802753","https://openalex.org/W2130750927"],"abstract_inverted_index":{"Information":[0],"about":[1],"the":[2,6,126,130,144,149,158,161],"genomic":[3],"coordinates":[4],"and":[5,38,88,103,115,151,160],"sequence":[7],"of":[8,21,26,29,59,66,125,133,139,163],"experimentally":[9],"identified":[10,63],"transcription":[11,86],"factor":[12],"binding":[13,45,61,82],"sites":[14,62,83,146],"is":[15,33,55],"found":[16],"scattered":[17],"under":[18],"a":[19,56,136],"variety":[20],"diverse":[22],"formats.":[23],"The":[24],"availability":[25],"standard":[27],"collections":[28],"such":[30],"high-quality":[31],"data":[32,120],"important":[34],"to":[35,43,155],"design,":[36],"evaluate":[37],"improve":[39],"novel":[40],"computational":[41],"approaches":[42],"identify":[44],"motifs":[46],"on":[47,143],"promoter":[48,104],"sequences":[49],"from":[50,75,84],"related":[51],"genes.":[52],"ABS":[53,134],"(http://genome.imim.es/datasets/abs2005/index.html)":[54],"public":[57],"database":[58],"known":[60,145],"in":[64,93,148],"promoters":[65],"orthologous":[67,90],"vertebrate":[68],"genes":[69,92],"that":[70],"have":[71,78],"been":[72],"manually":[73],"curated":[74],"bibliography.":[76],"We":[77],"annotated":[79],"650":[80],"experimental":[81],"68":[85],"factors":[87],"100":[89],"target":[91],"human,":[94],"mouse,":[95],"rat":[96],"or":[97],"chicken":[98],"genome":[99],"sequences.":[100],"Computational":[101],"predictions":[102],"alignment":[105],"information":[106],"are":[107],"also":[108],"provided":[109],"for":[110],"each":[111],"entry.":[112],"A":[113],"simple":[114],"easy-to-use":[116],"web":[117],"interface":[118],"facilitates":[119],"retrieval":[121],"allowing":[122],"different":[123],"views":[124],"information.":[127],"In":[128],"addition,":[129],"release":[131],"1.0":[132],"includes":[135],"customizable":[137],"generator":[138],"artificial":[140],"datasets":[141],"based":[142],"contained":[147],"collection":[150],"an":[152],"evaluation":[153],"tool":[154],"aid":[156],"during":[157],"training":[159],"assessment":[162],"motif-finding":[164],"programs.":[165]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":5},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":7},{"year":2012,"cited_by_count":8}],"updated_date":"2026-05-22T06:13:13.366637","created_date":"2025-10-10T00:00:00"}
