{"id":"https://openalex.org/W2009297402","doi":"https://doi.org/10.1093/nar/gki586","title":"MEDock: a web server for efficient prediction of ligand binding sites based on a novel optimization algorithm","display_name":"MEDock: a web server for efficient prediction of ligand binding sites based on a novel optimization algorithm","publication_year":2005,"publication_date":"2005-07-01","ids":{"openalex":"https://openalex.org/W2009297402","doi":"https://doi.org/10.1093/nar/gki586","mag":"2009297402","pmid":"https://pubmed.ncbi.nlm.nih.gov/15991337"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gki586","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gki586","pdf_url":"https://academic.oup.com/nar/article-pdf/33/suppl_2/W233/7623822/gki586.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/33/suppl_2/W233/7623822/gki586.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5030417045","display_name":"Darby Tien-Hao Chang","orcid":"https://orcid.org/0000-0002-5056-8679"},"institutions":[{"id":"https://openalex.org/I16733864","display_name":"National Taiwan University","ror":"https://ror.org/05bqach95","country_code":"TW","type":"education","lineage":["https://openalex.org/I16733864"]},{"id":"https://openalex.org/I99613584","display_name":"National Taipei University","ror":"https://ror.org/03e29r284","country_code":"TW","type":"education","lineage":["https://openalex.org/I99613584"]}],"countries":["TW"],"is_corresponding":true,"raw_author_name":"D. T.-H. Chang","raw_affiliation_strings":["Department of Computer Science and Information Engineering, National Taiwan University Taipei 106, Taiwan, ROC","Department of Computer Science and Information Engineering, National Taiwan University, Taipei 106, Taiwan, ROC#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Information Engineering, National Taiwan University Taipei 106, Taiwan, ROC","institution_ids":["https://openalex.org/I16733864","https://openalex.org/I99613584"]},{"raw_affiliation_string":"Department of Computer Science and Information Engineering, National Taiwan University, Taipei 106, Taiwan, ROC#TAB#","institution_ids":["https://openalex.org/I16733864"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025555646","display_name":"Yen\u2010Jen Oyang","orcid":null},"institutions":[{"id":"https://openalex.org/I16733864","display_name":"National Taiwan University","ror":"https://ror.org/05bqach95","country_code":"TW","type":"education","lineage":["https://openalex.org/I16733864"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Y.-J. Oyang","raw_affiliation_strings":["Department of Computer Science and Information Engineering and","Graduate Institute of Networking and Multimedia, National Taiwan University, Taipei 106, Taiwan, ROC,","National Taiwan University > > > >  >  >"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Information Engineering and","institution_ids":[]},{"raw_affiliation_string":"Graduate Institute of Networking and Multimedia, National Taiwan University, Taipei 106, Taiwan, ROC,","institution_ids":["https://openalex.org/I16733864"]},{"raw_affiliation_string":"National Taiwan University > > > >  >  >","institution_ids":["https://openalex.org/I16733864"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5075779650","display_name":"Jung\u2010Hsin Lin","orcid":"https://orcid.org/0000-0002-6712-4994"},"institutions":[{"id":"https://openalex.org/I16733864","display_name":"National Taiwan University","ror":"https://ror.org/05bqach95","country_code":"TW","type":"education","lineage":["https://openalex.org/I16733864"]},{"id":"https://openalex.org/I4210096666","display_name":"Institute of Biomedical Sciences, Academia Sinica","ror":"https://ror.org/00tk6s776","country_code":"TW","type":"facility","lineage":["https://openalex.org/I4210096666","https://openalex.org/I84653119"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"J.-H. Lin","raw_affiliation_strings":["Institute of Biomedical Sciences, Academia Sinica, Taipei, 115, Taiwan, ROC","School of Pharmacy, National Taiwan University, Taipei 100, Taiwan, ROC and","Institute of Biomedical Sciences Academia Sinica Taiwan","National Taiwan University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Biomedical Sciences, Academia Sinica, Taipei, 115, Taiwan, ROC","institution_ids":["https://openalex.org/I4210096666"]},{"raw_affiliation_string":"School of Pharmacy, National Taiwan University, Taipei 100, Taiwan, ROC and","institution_ids":["https://openalex.org/I16733864"]},{"raw_affiliation_string":"Institute of Biomedical Sciences Academia Sinica Taiwan","institution_ids":["https://openalex.org/I4210096666"]},{"raw_affiliation_string":"National Taiwan University","institution_ids":["https://openalex.org/I16733864"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5030417045"],"corresponding_institution_ids":["https://openalex.org/I16733864","https://openalex.org/I99613584"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":4.1425,"has_fulltext":true,"cited_by_count":91,"citation_normalized_percentile":{"value":0.94400442,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"33","issue":"Web Server","first_page":"W233","last_page":"W238"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10274","display_name":"Synthesis and biological activity","score":0.9958000183105469,"subfield":{"id":"https://openalex.org/subfields/1605","display_name":"Organic Chemistry"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11440","display_name":"Click Chemistry and Applications","score":0.9905999898910522,"subfield":{"id":"https://openalex.org/subfields/1605","display_name":"Organic Chemistry"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.889803409576416},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5709601044654846},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.5611401200294495},{"id":"https://openalex.org/keywords/ligand","display_name":"Ligand (biochemistry)","score":0.5242450833320618},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.33816957473754883},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.331479549407959},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.26898229122161865},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.26193612813949585},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.1659778356552124},{"id":"https://openalex.org/keywords/receptor","display_name":"Receptor","score":0.08931884169578552}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.889803409576416},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5709601044654846},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.5611401200294495},{"id":"https://openalex.org/C116569031","wikidata":"https://www.wikidata.org/wiki/Q899107","display_name":"Ligand (biochemistry)","level":3,"score":0.5242450833320618},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.33816957473754883},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.331479549407959},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.26898229122161865},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.26193612813949585},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.1659778356552124},{"id":"https://openalex.org/C170493617","wikidata":"https://www.wikidata.org/wiki/Q208467","display_name":"Receptor","level":2,"score":0.08931884169578552}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019277","descriptor_name":"Entropy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019277","descriptor_name":"Entropy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019277","descriptor_name":"Entropy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gki586","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gki586","pdf_url":"https://academic.oup.com/nar/article-pdf/33/suppl_2/W233/7623822/gki586.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:15991337","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/15991337","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:europepmc.org:155261","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/1160262","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gki586","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gki586","pdf_url":"https://academic.oup.com/nar/article-pdf/33/suppl_2/W233/7623822/gki586.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.8399999737739563,"id":"https://metadata.un.org/sdg/7","display_name":"Affordable and clean energy"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320321040","display_name":"National Science Council","ror":"https://ror.org/02kv4zf79"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2009297402.pdf","grobid_xml":"https://content.openalex.org/works/W2009297402.grobid-xml"},"referenced_works_count":35,"referenced_works":["https://openalex.org/W1497256448","https://openalex.org/W1515975222","https://openalex.org/W1548802052","https://openalex.org/W1585090495","https://openalex.org/W1659842140","https://openalex.org/W1969554454","https://openalex.org/W1985588649","https://openalex.org/W1986240377","https://openalex.org/W2003127541","https://openalex.org/W2011952909","https://openalex.org/W2019732485","https://openalex.org/W2035753075","https://openalex.org/W2041721370","https://openalex.org/W2044442377","https://openalex.org/W2047399603","https://openalex.org/W2050273205","https://openalex.org/W2056611993","https://openalex.org/W2057846043","https://openalex.org/W2058190282","https://openalex.org/W2061843861","https://openalex.org/W2074978477","https://openalex.org/W2091734240","https://openalex.org/W2099111195","https://openalex.org/W2114367386","https://openalex.org/W2126714395","https://openalex.org/W2129187661","https://openalex.org/W2158534713","https://openalex.org/W2167041509","https://openalex.org/W2171755502","https://openalex.org/W2765326491","https://openalex.org/W2797816625","https://openalex.org/W4211083646","https://openalex.org/W4235148468","https://openalex.org/W4243603320","https://openalex.org/W4244581603"],"related_works":["https://openalex.org/W2051487156","https://openalex.org/W2073681303","https://openalex.org/W2053286651","https://openalex.org/W2065457896","https://openalex.org/W2181743346","https://openalex.org/W3173234801","https://openalex.org/W2187401768","https://openalex.org/W2181413294","https://openalex.org/W2989452537","https://openalex.org/W2167984027"],"abstract_inverted_index":{"The":[0,86,102],"prediction":[1],"of":[2,10,18,33,47,79,88,117,125,131,169,172,183,194,215,227,230,244],"ligand":[3,99,173],"binding":[4,19,48,100,174,209],"sites":[5,20],"is":[6,59,84,91,142,190,252],"an":[7,94],"essential":[8],"part":[9],"the":[11,16,23,27,31,38,45,53,61,77,80,113,118,123,132,136,181,184,191,195,207,219,228,235,242],"drug":[12],"discovery":[13],"process.":[14],"Knowing":[15],"location":[17],"greatly":[21,240],"facilitates":[22],"search":[24,109,134],"for":[25,40,64,97,247],"hits,":[26],"lead":[28],"optimization":[29,137],"process,":[30],"design":[32,78],"site-directed":[34],"mutagenesis":[35],"experiments":[36],"and":[37,256],"hunt":[39],"structural":[41],"features":[42],"that":[43,111,164,202],"influence":[44],"selectivity":[46],"in":[49,122,140,234],"order":[50],"to":[51,92,206],"minimize":[52],"drug's":[54],"adverse":[55],"effects.":[56],"However,":[57],"docking":[58,236],"still":[60],"rate-limiting":[62],"step":[63],"such":[65],"predictions;":[66],"consequently,":[67],"much":[68],"more":[69],"efficient":[70,95],"algorithms":[71],"are":[72],"required.":[73,221],"In":[74],"this":[75,89],"article,":[76],"MEDock":[81,103,141,203,238,251],"web":[82,104],"server":[83,105],"described.":[85],"goal":[87],"sever":[90],"provide":[93],"utility":[96],"predicting":[98],"sites.":[101],"incorporates":[106],"a":[107,129,166,225],"global":[108,133],"strategy":[110],"exploits":[112],"maximum":[114],"entropy":[115],"property":[116],"Gaussian":[119],"probability":[120],"distribution":[121],"context":[124],"information":[126],"theory.":[127],"As":[128],"result":[130],"strategy,":[135],"algorithm":[138,187],"incorporated":[139],"significantly":[143,212],"superior":[144],"when":[145],"dealing":[146],"with":[147,180,211],"very":[148],"rugged":[149],"energy":[150,216,231],"landscapes,":[151],"which":[152,189],"usually":[153],"have":[154],"insurmountable":[155],"barriers.":[156],"This":[157],"article":[158],"describes":[159],"four":[160],"different":[161,170],"benchmark":[162,249],"cases":[163],"span":[165],"diverse":[167],"set":[168],"types":[171],"interactions.":[175],"These":[176,199],"benchmarks":[177],"were":[178],"compared":[179],"use":[182],"Lamarckian":[185],"genetic":[186],"(LGA),":[188],"major":[192],"workhorse":[193],"well-known":[196],"AutoDock":[197],"program.":[198],"results":[200],"demonstrate":[201],"consistently":[204],"converged":[205],"correct":[208],"modes":[210],"smaller":[213],"numbers":[214],"evaluations":[217,232],"than":[218],"LGA":[220],"When":[222],"judged":[223],"by":[224],"threshold":[226],"number":[229],"consumed":[233],"simulation,":[237],"also":[239],"elevates":[241],"rate":[243],"accurate":[245],"predictions":[246],"all":[248],"cases.":[250],"available":[253],"at":[254],"http://medock.csie.ntu.edu.tw/":[255],"http://bioinfo.mc.ntu.edu.tw/medock/.":[257]},"counts_by_year":[{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":10},{"year":2018,"cited_by_count":10},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":5},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":6},{"year":2013,"cited_by_count":6},{"year":2012,"cited_by_count":5}],"updated_date":"2026-07-27T08:26:11.824852","created_date":"2025-10-10T00:00:00"}
