{"id":"https://openalex.org/W2142766432","doi":"https://doi.org/10.1093/nar/gki448","title":"AntiHunter 2.0: increased speed and sensitivity in searching BLAST output for EST antisense transcripts","display_name":"AntiHunter 2.0: increased speed and sensitivity in searching BLAST output for EST antisense transcripts","publication_year":2005,"publication_date":"2005-06-26","ids":{"openalex":"https://openalex.org/W2142766432","doi":"https://doi.org/10.1093/nar/gki448","mag":"2142766432","pmid":"https://pubmed.ncbi.nlm.nih.gov/15980558"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gki448","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gki448","pdf_url":"https://academic.oup.com/nar/article-pdf/33/suppl_2/W665/7623279/gki448.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/33/suppl_2/W665/7623279/gki448.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5065828467","display_name":"G Lavorgna","orcid":"https://orcid.org/0000-0002-7688-2113"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"G. Lavorgna","raw_affiliation_strings":["DIBIT-San Raffaele Scientific Institute Via Olgettina 58, 20132 Milan, Italy. giovanni.lavorgna@hsr.it","DIBIT-San Raffaele Scientific Institute Via Olgettina 58, 20132 Milan, Italy"],"affiliations":[{"raw_affiliation_string":"DIBIT-San Raffaele Scientific Institute Via Olgettina 58, 20132 Milan, Italy. giovanni.lavorgna@hsr.it","institution_ids":[]},{"raw_affiliation_string":"DIBIT-San Raffaele Scientific Institute Via Olgettina 58, 20132 Milan, Italy","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026328481","display_name":"Riccardo Triunfo","orcid":null},"institutions":[{"id":"https://openalex.org/I2800759272","display_name":"Center for Advanced Studies Research and Development in Sardinia","ror":"https://ror.org/03jdxdk20","country_code":"IT","type":"facility","lineage":["https://openalex.org/I2800759272"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"R. Triunfo","raw_affiliation_strings":["CRS4-Centro di Ricerca, Sviluppo e Studi Superiori in Sardegna and","Sviluppo e Studi Superiori in Sardegna"],"affiliations":[{"raw_affiliation_string":"CRS4-Centro di Ricerca, Sviluppo e Studi Superiori in Sardegna and","institution_ids":["https://openalex.org/I2800759272"]},{"raw_affiliation_string":"Sviluppo e Studi Superiori in Sardegna","institution_ids":["https://openalex.org/I2800759272"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084909177","display_name":"Federico Santoni","orcid":"https://orcid.org/0000-0002-3258-4747"},"institutions":[{"id":"https://openalex.org/I2800759272","display_name":"Center for Advanced Studies Research and Development in Sardinia","ror":"https://ror.org/03jdxdk20","country_code":"IT","type":"facility","lineage":["https://openalex.org/I2800759272"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"F. Santoni","raw_affiliation_strings":["CRS4-Centro di Ricerca, Sviluppo e Studi Superiori in Sardegna and","Sviluppo e Studi Superiori in Sardegna"],"affiliations":[{"raw_affiliation_string":"CRS4-Centro di Ricerca, Sviluppo e Studi Superiori in Sardegna and","institution_ids":["https://openalex.org/I2800759272"]},{"raw_affiliation_string":"Sviluppo e Studi Superiori in Sardegna","institution_ids":["https://openalex.org/I2800759272"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015510456","display_name":"Ugo Orfanelli","orcid":"https://orcid.org/0000-0003-3792-9174"},"institutions":[{"id":"https://openalex.org/I292310028","display_name":"San Raffaele University of Rome","ror":"https://ror.org/02rwycx38","country_code":"IT","type":"education","lineage":["https://openalex.org/I292310028"]},{"id":"https://openalex.org/I154387261","display_name":"Vita-Salute San Raffaele University","ror":"https://ror.org/01gmqr298","country_code":"IT","type":"education","lineage":["https://openalex.org/I154387261"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"U. Orfanelli","raw_affiliation_strings":["DIBIT-San Raffaele Scientific Institute, Via Olgettina 58, 20132 Milan, Italy,","UNIVERSIT\u00c0 VITA-SALUTE, SAN RAFFAELE"],"affiliations":[{"raw_affiliation_string":"DIBIT-San Raffaele Scientific Institute, Via Olgettina 58, 20132 Milan, Italy,","institution_ids":["https://openalex.org/I292310028"]},{"raw_affiliation_string":"UNIVERSIT\u00c0 VITA-SALUTE, SAN RAFFAELE","institution_ids":["https://openalex.org/I154387261"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080800264","display_name":"Sara Noci","orcid":"https://orcid.org/0000-0002-6227-3907"},"institutions":[{"id":"https://openalex.org/I292310028","display_name":"San Raffaele University of Rome","ror":"https://ror.org/02rwycx38","country_code":"IT","type":"education","lineage":["https://openalex.org/I292310028"]},{"id":"https://openalex.org/I154387261","display_name":"Vita-Salute San Raffaele University","ror":"https://ror.org/01gmqr298","country_code":"IT","type":"education","lineage":["https://openalex.org/I154387261"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"S. Noci","raw_affiliation_strings":["DIBIT-San Raffaele Scientific Institute, Via Olgettina 58, 20132 Milan, Italy,","UNIVERSIT\u00c0 VITA-SALUTE, SAN RAFFAELE"],"affiliations":[{"raw_affiliation_string":"DIBIT-San Raffaele Scientific Institute, Via Olgettina 58, 20132 Milan, Italy,","institution_ids":["https://openalex.org/I292310028"]},{"raw_affiliation_string":"UNIVERSIT\u00c0 VITA-SALUTE, SAN RAFFAELE","institution_ids":["https://openalex.org/I154387261"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016966812","display_name":"Alessandro Bulfone","orcid":null},"institutions":[{"id":"https://openalex.org/I2799613648","display_name":"Parco Tecnologico Padano","ror":"https://ror.org/05bamms85","country_code":"IT","type":"archive","lineage":["https://openalex.org/I2799613648"]},{"id":"https://openalex.org/I292310028","display_name":"San Raffaele University of Rome","ror":"https://ror.org/02rwycx38","country_code":"IT","type":"education","lineage":["https://openalex.org/I292310028"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"A. Bulfone","raw_affiliation_strings":["Bio-flag Srl, Parco Scientifico e Tecnologico POLARIS, Loc. Pixina Manna, 09010 Pula (CA), Italy","DIBIT-San Raffaele Scientific Institute, Via Olgettina 58, 20132 Milan, Italy,","Bioflag Srl"],"affiliations":[{"raw_affiliation_string":"Bio-flag Srl, Parco Scientifico e Tecnologico POLARIS, Loc. Pixina Manna, 09010 Pula (CA), Italy","institution_ids":["https://openalex.org/I2799613648"]},{"raw_affiliation_string":"DIBIT-San Raffaele Scientific Institute, Via Olgettina 58, 20132 Milan, Italy,","institution_ids":["https://openalex.org/I292310028"]},{"raw_affiliation_string":"Bioflag Srl","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073829656","display_name":"Gianluigi Zanetti","orcid":"https://orcid.org/0000-0003-1683-7350"},"institutions":[{"id":"https://openalex.org/I2800759272","display_name":"Center for Advanced Studies Research and Development in Sardinia","ror":"https://ror.org/03jdxdk20","country_code":"IT","type":"facility","lineage":["https://openalex.org/I2800759272"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"G. Zanetti","raw_affiliation_strings":["CRS4-Centro di Ricerca, Sviluppo e Studi Superiori in Sardegna and","Sviluppo e Studi Superiori in Sardegna"],"affiliations":[{"raw_affiliation_string":"CRS4-Centro di Ricerca, Sviluppo e Studi Superiori in Sardegna and","institution_ids":["https://openalex.org/I2800759272"]},{"raw_affiliation_string":"Sviluppo e Studi Superiori in Sardegna","institution_ids":["https://openalex.org/I2800759272"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5083188517","display_name":"Giorgio Casari","orcid":"https://orcid.org/0000-0002-0115-8980"},"institutions":[{"id":"https://openalex.org/I4210133214","display_name":"IRCCS Ospedale San Raffaele","ror":"https://ror.org/039zxt351","country_code":"IT","type":"healthcare","lineage":["https://openalex.org/I4210133214","https://openalex.org/I4210153126"]},{"id":"https://openalex.org/I292310028","display_name":"San Raffaele University of Rome","ror":"https://ror.org/02rwycx38","country_code":"IT","type":"education","lineage":["https://openalex.org/I292310028"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"G. Casari","raw_affiliation_strings":["DIBIT-San Raffaele Scientific Institute, Via Olgettina 58, 20132 Milan, Italy,","IRCCS Ospedale San Raffaele"],"affiliations":[{"raw_affiliation_string":"DIBIT-San Raffaele Scientific Institute, Via Olgettina 58, 20132 Milan, Italy,","institution_ids":["https://openalex.org/I292310028"]},{"raw_affiliation_string":"IRCCS Ospedale San Raffaele","institution_ids":["https://openalex.org/I4210133214"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5065828467"],"corresponding_institution_ids":[],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":0.5041,"has_fulltext":true,"cited_by_count":16,"citation_normalized_percentile":{"value":0.64245052,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"33","issue":"Web Server","first_page":"W665","last_page":"W668"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10207","display_name":"Advanced biosensing and bioanalysis techniques","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10878","display_name":"CRISPR and Genetic Engineering","score":0.996399998664856,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7805429697036743},{"id":"https://openalex.org/keywords/false-positive-paradox","display_name":"False positive paradox","score":0.6163363456726074},{"id":"https://openalex.org/keywords/expressed-sequence-tag","display_name":"Expressed sequence tag","score":0.6138775944709778},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5094278454780579},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.44852370023727417},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4339381456375122},{"id":"https://openalex.org/keywords/transcription","display_name":"Transcription (linguistics)","score":0.42802396416664124},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.41572442650794983},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.24241837859153748},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.23479709029197693},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.09616631269454956}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7805429697036743},{"id":"https://openalex.org/C64869954","wikidata":"https://www.wikidata.org/wiki/Q1859747","display_name":"False positive paradox","level":2,"score":0.6163363456726074},{"id":"https://openalex.org/C149034497","wikidata":"https://www.wikidata.org/wiki/Q1384835","display_name":"Expressed sequence tag","level":4,"score":0.6138775944709778},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5094278454780579},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.44852370023727417},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4339381456375122},{"id":"https://openalex.org/C179926584","wikidata":"https://www.wikidata.org/wiki/Q207714","display_name":"Transcription (linguistics)","level":2,"score":0.42802396416664124},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.41572442650794983},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.24241837859153748},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.23479709029197693},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.09616631269454956},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013997","descriptor_name":"Time Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013997","descriptor_name":"Time Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013997","descriptor_name":"Time Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016372","descriptor_name":"RNA, Antisense","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016372","descriptor_name":"RNA, Antisense","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016372","descriptor_name":"RNA, Antisense","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020224","descriptor_name":"Expressed Sequence Tags","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D020224","descriptor_name":"Expressed Sequence Tags","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D020224","descriptor_name":"Expressed Sequence Tags","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/nar/gki448","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gki448","pdf_url":"https://academic.oup.com/nar/article-pdf/33/suppl_2/W665/7623279/gki448.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:15980558","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/15980558","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:europepmc.org:155224","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/1160209","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:serval.unil.ch:BIB_A90618315C4A","is_oa":true,"landing_page_url":"https://serval.unil.ch/notice/serval:BIB_A90618315C4A","pdf_url":null,"source":{"id":"https://openalex.org/S4306401797","display_name":"SERVAL (Universit\u00e9 de Lausanne)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210093590","host_organization_name":"Swiss School of Archaeology in Greece","host_organization_lineage":["https://openalex.org/I4210093590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Res, vol. 33, no. Web Server issue, pp. W665-8","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:iris.unil.ch:iris/185955","is_oa":true,"landing_page_url":"https://iris.unil.ch/handle/iris/185955","pdf_url":"https://iris.unil.ch/bitstreams/272cfbde-76ac-4803-82f8-0331676b0db1/download","source":{"id":"https://openalex.org/S7407055444","display_name":"IRIS","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"journal article"}],"best_oa_location":{"id":"doi:10.1093/nar/gki448","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gki448","pdf_url":"https://academic.oup.com/nar/article-pdf/33/suppl_2/W665/7623279/gki448.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5400000214576721,"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320321873","display_name":"Ministero dell\u2019Istruzione, dell\u2019Universit\u00e0 e della Ricerca","ror":"https://ror.org/0166hxq48"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2142766432.pdf","grobid_xml":"https://content.openalex.org/works/W2142766432.grobid-xml"},"referenced_works_count":14,"referenced_works":["https://openalex.org/W1522230146","https://openalex.org/W1532161523","https://openalex.org/W1535914077","https://openalex.org/W1964789204","https://openalex.org/W1968101073","https://openalex.org/W1998028567","https://openalex.org/W2010419186","https://openalex.org/W2055666215","https://openalex.org/W2081873181","https://openalex.org/W2108408370","https://openalex.org/W2134739697","https://openalex.org/W2158156090","https://openalex.org/W2166593443","https://openalex.org/W2168909179"],"related_works":["https://openalex.org/W1557094818","https://openalex.org/W2183246718","https://openalex.org/W2099261052","https://openalex.org/W3209204065","https://openalex.org/W2095438057","https://openalex.org/W2383815826","https://openalex.org/W2105707930","https://openalex.org/W1755711892","https://openalex.org/W2164205946","https://openalex.org/W2160907113"],"abstract_inverted_index":{"An":[0],"increasing":[1],"number":[2,167],"of":[3,63,89,94,110,142,154,168,192,226],"eukaryotic":[4],"and":[5,92,221],"prokaryotic":[6],"genes":[7],"are":[8],"being":[9],"found":[10,211],"to":[11,22,43,75,130,151,159,163,203,254,269,278],"have":[12,38,148],"natural":[13],"antisense":[14,25,68,127,169,182],"transcripts":[15,69],"(NATs).":[16],"There":[17],"is":[18,286],"also":[19,197],"growing":[20],"evidence":[21],"suggest":[23],"that":[24,124,212],"transcription":[26],"could":[27,230],"play":[28],"a":[29,82,107,165,172,213,265],"key":[30],"role":[31],"in":[32,113,157,189],"many":[33],"human":[34],"diseases.":[35],"Consequently,":[36],"there":[37],"been":[39,149],"several":[40],"recent":[41],"attempts":[42],"set":[44],"up":[45,268],"computational":[46],"procedures":[47],"aimed":[48],"at":[49,289],"identifying":[50],"novel":[51],"NATs.":[52],"Our":[53],"group":[54],"has":[55],"developed":[56,139],"the":[57,61,79,95,100,103,114,121,131,137,143,155,190,193,199,217,222,227,235,238,245,259,276],"AntiHunter":[58,144,174,284],"program":[59,80,104,156,218],"for":[60],"identification":[62],"expressed":[64],"sequence":[65,84,112,229,267],"tag":[66],"(EST)":[67],"from":[70],"BLAST":[71,246],"output.":[72],"In":[73],"order":[74,158],"perform":[76],"an":[77,86,126],"analysis,":[78],"requires":[81],"genomic":[83,96],"plus":[85],"associated":[87],"list":[88],"transcript":[90,128],"names":[91],"coordinates":[93],"region.":[97],"After":[98],"masking":[99],"repeated":[101],"regions,":[102],"carries":[105],"out":[106],"BLASTN":[108],"search":[109,219],"this":[111,152,251],"selected":[115],"EST":[116,122],"database,":[117],"reporting":[118],"via":[119],"email":[120],"entries":[123],"reveal":[125],"according":[129],"user-supplied":[132],"list.":[133],"Here,":[134],"we":[135,210],"present":[136],"newly":[138],"version":[140,153],"2.0":[141],"tool.":[145],"Several":[146],"improvements":[147],"added":[150],"increase":[160,188],"its":[161],"ability":[162],"detect":[164],"larger":[166],"ESTs.":[170],"As":[171],"result,":[173],"can":[175,263],"now":[176,249],"detect,":[177],"on":[178],"average,":[179],">45%":[180],"more":[181],"ESTs":[183],"with":[184,237],"little":[185],"or":[186],"no":[187],"percentage":[191],"false":[194],"positives.":[195],"We":[196,248],"raised":[198],"maximum":[200,223],"query":[201,266,281],"size":[202,225],"3":[204],"Mb":[205,271],"(previously":[206],"1":[207],"Mb).":[208],"Moreover,":[209],"reasonable":[214],"trade-off":[215],"between":[216],"sensitivity":[220],"allowed":[224],"input-query":[228],"be":[231],"obtained":[232],"by":[233,243],"querying":[234],"database":[236],"MEGABLAST":[239,260],"program,":[240],"rather":[241],"than":[242],"using":[244],"one.":[247],"offer":[250],"new":[252],"opportunity":[253],"users,":[255],"i.e.":[256],"if":[257],"choosing":[258],"option,":[261],"users":[262],"input":[264],"30":[270],"long,":[272],"thus":[273],"considerably":[274],"improving":[275],"possibility":[277],"analyze":[279],"longer":[280],"regions.":[282],"The":[283],"tool":[285],"freely":[287],"available":[288],"http://bioinfo.crs4.it/AH2.0.":[290]},"counts_by_year":[{"year":2020,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":2},{"year":2014,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
