{"id":"https://openalex.org/W2162135725","doi":"https://doi.org/10.1093/nar/gki429","title":"PubFinder: a tool for improving retrieval rate of relevant PubMed abstracts","display_name":"PubFinder: a tool for improving retrieval rate of relevant PubMed abstracts","publication_year":2005,"publication_date":"2005-06-26","ids":{"openalex":"https://openalex.org/W2162135725","doi":"https://doi.org/10.1093/nar/gki429","mag":"2162135725","pmid":"https://pubmed.ncbi.nlm.nih.gov/15980583"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gki429","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gki429","pdf_url":"https://academic.oup.com/nar/article-pdf/33/suppl_2/W774/7623114/gki429.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/33/suppl_2/W774/7623114/gki429.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5109893199","display_name":"Thomas Goetz","orcid":null},"institutions":[{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]},{"id":"https://openalex.org/I17937529","display_name":"German Cancer Research Center","ror":"https://ror.org/04cdgtt98","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I17937529"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"T. Goetz","raw_affiliation_strings":["Central Spectroscopy Department (B090)-Molecular, Modeling, German Cancer Research Center, Heidelberg Im Neuenheimer Feld 280, D-69120 Heidelberg, Germany","Central Spectroscopy Department (B090)\u2013Molecular, Modeling, German Cancer Research Center Heidelberg  Im Neuenheimer Feld 280, D-69120 Heidelberg, Germany"],"affiliations":[{"raw_affiliation_string":"Central Spectroscopy Department (B090)-Molecular, Modeling, German Cancer Research Center, Heidelberg Im Neuenheimer Feld 280, D-69120 Heidelberg, Germany","institution_ids":[]},{"raw_affiliation_string":"Central Spectroscopy Department (B090)\u2013Molecular, Modeling, German Cancer Research Center Heidelberg  Im Neuenheimer Feld 280, D-69120 Heidelberg, Germany","institution_ids":["https://openalex.org/I17937529","https://openalex.org/I223822909"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5112246179","display_name":"C.-W. von der Lieth","orcid":null},"institutions":[{"id":"https://openalex.org/I17937529","display_name":"German Cancer Research Center","ror":"https://ror.org/04cdgtt98","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I17937529"]},{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"C.-W. von der Lieth","raw_affiliation_strings":["Central Spectroscopy Department (B090)\u2013Molecular, Modeling, German Cancer Research Center Heidelberg  Im Neuenheimer Feld 280, D-69120 Heidelberg, Germany"],"affiliations":[{"raw_affiliation_string":"Central Spectroscopy Department (B090)\u2013Molecular, Modeling, German Cancer Research Center Heidelberg  Im Neuenheimer Feld 280, D-69120 Heidelberg, Germany","institution_ids":["https://openalex.org/I17937529","https://openalex.org/I223822909"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5109893199"],"corresponding_institution_ids":["https://openalex.org/I17937529","https://openalex.org/I223822909"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":1.7722,"has_fulltext":true,"cited_by_count":44,"citation_normalized_percentile":{"value":0.84106904,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"33","issue":"Web Server","first_page":"W774","last_page":"W778"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.984000027179718,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10102","display_name":"scientometrics and bibliometrics research","score":0.949999988079071,"subfield":{"id":"https://openalex.org/subfields/1804","display_name":"Statistics, Probability and Uncertainty"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.9179466962814331},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.48598751425743103},{"id":"https://openalex.org/keywords/medline","display_name":"MEDLINE","score":0.43549612164497375},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.38780489563941956},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.11632618308067322},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.11213913559913635}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.9179466962814331},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.48598751425743103},{"id":"https://openalex.org/C2779473830","wikidata":"https://www.wikidata.org/wiki/Q1540899","display_name":"MEDLINE","level":2,"score":0.43549612164497375},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.38780489563941956},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.11632618308067322},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.11213913559913635}],"mesh":[{"descriptor_ui":"D000043","descriptor_name":"Abstracting and Indexing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000043","descriptor_name":"Abstracting and Indexing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000043","descriptor_name":"Abstracting and Indexing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gki429","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gki429","pdf_url":"https://academic.oup.com/nar/article-pdf/33/suppl_2/W774/7623114/gki429.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:15980583","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/15980583","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:europepmc.org:155208","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/1160190","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gki429","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gki429","pdf_url":"https://academic.oup.com/nar/article-pdf/33/suppl_2/W774/7623114/gki429.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Reduced inequalities","score":0.6600000262260437,"id":"https://metadata.un.org/sdg/10"}],"awards":[{"id":"https://openalex.org/G6052429835","display_name":null,"funder_award_id":"(DFG)","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G8330397625","display_name":null,"funder_award_id":"Funding","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"}],"funders":[{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2162135725.pdf","grobid_xml":"https://content.openalex.org/works/W2162135725.grobid-xml"},"referenced_works_count":10,"referenced_works":["https://openalex.org/W58375769","https://openalex.org/W1848220807","https://openalex.org/W2016398181","https://openalex.org/W2053673723","https://openalex.org/W2104768328","https://openalex.org/W2109365359","https://openalex.org/W2112236650","https://openalex.org/W2112441656","https://openalex.org/W2132744551","https://openalex.org/W2398842282"],"related_works":["https://openalex.org/W2082860237","https://openalex.org/W2119695867","https://openalex.org/W2130076355","https://openalex.org/W1990804418","https://openalex.org/W1993764875","https://openalex.org/W2046158694","https://openalex.org/W2788277189","https://openalex.org/W1971568933","https://openalex.org/W2013243191","https://openalex.org/W2117258802"],"abstract_inverted_index":{"Since":[0],"it":[1],"is":[2,36,66,81,93,97],"becoming":[3,24],"increasingly":[4],"laborious":[5],"to":[6,29,43,111],"manually":[7],"extract":[8],"useful":[9],"information":[10],"embedded":[11],"in":[12,31,118,123,136,156],"the":[13,45,58,79,85,112,124,139],"ever-growing":[14],"volumes":[15],"of":[16,48,60,64,90,109,121,127,145],"literature,":[17],"automated":[18],"intelligent":[19],"text":[20],"analysis":[21],"tools":[22],"are":[23,69],"more":[25,27],"and":[26,133],"essential":[28],"assist":[30],"this":[32],"task.":[33],"PubFinder":[34,137],"(www.glycosciences.de/tools/PubFinder)":[35],"a":[37,53,61,72,88,119,153],"publicly":[38],"available":[39],"web":[40],"tool":[41],"designed":[42],"improve":[44],"retrieval":[46],"rate":[47],"scientific":[49,55,73,114],"abstracts":[50,65,105],"relevant":[51],"for":[52,71,100,106,142],"specific":[54,154],"topic.":[56,74,115],"Only":[57],"selection":[59],"representative":[62],"set":[63],"required,":[67],"which":[68,96],"central":[70],"No":[75],"special":[76],"knowledge":[77],"concerning":[78],"query-syntax":[80],"necessary.":[82],"Based":[83],"on":[84],"selected":[86],"abstracts,":[87],"list":[89],"discriminating":[91],"words":[92],"automatically":[94],"calculated,":[95],"subsequently":[98],"used":[99],"scoring":[101],"all":[102],"defined":[103,113],"PubMed":[104],"their":[107,128],"probability":[108],"belonging":[110],"This":[116],"results":[117],"hit-list":[120],"references":[122],"descending":[125],"order":[126],"likelihood":[129],"score.":[130],"The":[131],"algorithms":[132],"procedures":[134],"implemented":[135],"facilitate":[138],"perpetual":[140],"task":[141],"every":[143],"scientist":[144],"staying":[146],"up-to-date":[147],"with":[148,152],"current":[149],"publications":[150],"dealing":[151],"subject":[155],"biomedicine.":[157]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2017,"cited_by_count":3},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":4},{"year":2012,"cited_by_count":3}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
