{"id":"https://openalex.org/W2064641442","doi":"https://doi.org/10.1093/nar/gki415","title":"The multilocus sequence typing network: mlst.net","display_name":"The multilocus sequence typing network: mlst.net","publication_year":2005,"publication_date":"2005-06-26","ids":{"openalex":"https://openalex.org/W2064641442","doi":"https://doi.org/10.1093/nar/gki415","mag":"2064641442","pmid":"https://pubmed.ncbi.nlm.nih.gov/15980573"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gki415","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gki415","pdf_url":"https://academic.oup.com/nar/article-pdf/33/suppl_2/W728/7622990/gki415.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/33/suppl_2/W728/7622990/gki415.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5068117269","display_name":"David M. Aanensen","orcid":"https://orcid.org/0000-0001-6688-0854"},"institutions":[{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]},{"id":"https://openalex.org/I4210120729","display_name":"St Mary's Hospital","ror":"https://ror.org/02jv2qv86","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I4210120729","https://openalex.org/I4210127145"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"D. M. Aanensen","raw_affiliation_strings":["Department of Infectious Disease Epidemiology, Imperial College London, St Mary's Hospital, London W2 1PG, UK. d.aanensen@imperial.ac.uk","Department of Infectious Disease Epidemiology, Imperial College London, St Mary's Hospital, London W2 1PG, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Infectious Disease Epidemiology, Imperial College London, St Mary's Hospital, London W2 1PG, UK. d.aanensen@imperial.ac.uk","institution_ids":["https://openalex.org/I4210120729","https://openalex.org/I47508984"]},{"raw_affiliation_string":"Department of Infectious Disease Epidemiology, Imperial College London, St Mary's Hospital, London W2 1PG, UK","institution_ids":["https://openalex.org/I4210120729","https://openalex.org/I47508984"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5079737412","display_name":"Brian G. Spratt","orcid":"https://orcid.org/0000-0002-7257-4826"},"institutions":[{"id":"https://openalex.org/I4210120729","display_name":"St Mary's Hospital","ror":"https://ror.org/02jv2qv86","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I4210120729","https://openalex.org/I4210127145"]},{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"B. G. Spratt","raw_affiliation_strings":["Department of Infectious Disease Epidemiology, Imperial College London  St Mary's Hospital, London W2 1PG, UK","Department of Infectious Disease Epidemiology, Imperial College London, St Mary's Hospital, London W2 1PG, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Infectious Disease Epidemiology, Imperial College London  St Mary's Hospital, London W2 1PG, UK","institution_ids":["https://openalex.org/I4210120729","https://openalex.org/I47508984"]},{"raw_affiliation_string":"Department of Infectious Disease Epidemiology, Imperial College London, St Mary's Hospital, London W2 1PG, UK","institution_ids":["https://openalex.org/I4210120729","https://openalex.org/I47508984"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5068117269"],"corresponding_institution_ids":["https://openalex.org/I4210120729","https://openalex.org/I47508984"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":4.4227,"has_fulltext":true,"cited_by_count":266,"citation_normalized_percentile":{"value":0.95127884,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":100},"biblio":{"volume":"33","issue":"Web Server","first_page":"W728","last_page":"W733"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10873","display_name":"Bacterial Infections and Vaccines","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10150","display_name":"Antifungal resistance and susceptibility","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/multilocus-sequence-typing","display_name":"Multilocus sequence typing","score":0.9840080738067627},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.8819152116775513},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.6682044267654419},{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.6345999240875244},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.5746715068817139},{"id":"https://openalex.org/keywords/typing","display_name":"Typing","score":0.518402099609375},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.44892120361328125},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.33370041847229004},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.30683791637420654},{"id":"https://openalex.org/keywords/genotype","display_name":"Genotype","score":0.20988863706588745}],"concepts":[{"id":"https://openalex.org/C77434933","wikidata":"https://www.wikidata.org/wiki/Q4043440","display_name":"Multilocus sequence typing","level":4,"score":0.9840080738067627},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8819152116775513},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.6682044267654419},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.6345999240875244},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.5746715068817139},{"id":"https://openalex.org/C2781209916","wikidata":"https://www.wikidata.org/wiki/Q3215756","display_name":"Typing","level":2,"score":0.518402099609375},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.44892120361328125},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.33370041847229004},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.30683791637420654},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.20988863706588745},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000483","descriptor_name":"Alleles","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000483","descriptor_name":"Alleles","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000483","descriptor_name":"Alleles","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015373","descriptor_name":"Bacterial Typing Techniques","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015373","descriptor_name":"Bacterial Typing Techniques","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015373","descriptor_name":"Bacterial Typing Techniques","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016533","descriptor_name":"Mycological Typing Techniques","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016533","descriptor_name":"Mycological Typing Techniques","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016533","descriptor_name":"Mycological Typing Techniques","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/nar/gki415","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gki415","pdf_url":"https://academic.oup.com/nar/article-pdf/33/suppl_2/W728/7622990/gki415.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:15980573","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/15980573","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.833.3823","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.833.3823","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/content/33/suppl_2/W728.full.pdf","raw_type":"text"},{"id":"pmh:oai:pubmedcentral.nih.gov:1160176","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/1160176","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"},{"id":"pmh:oai:spiral.imperial.ac.uk:10044/1/32332","is_oa":true,"landing_page_url":"http://hdl.handle.net/10044/1/32332","pdf_url":null,"source":{"id":"https://openalex.org/S4306401396","display_name":"Spiral (Imperial College London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I47508984","host_organization_name":"Imperial College London","host_organization_lineage":["https://openalex.org/I47508984"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"W733","raw_type":"Journal Article"}],"best_oa_location":{"id":"doi:10.1093/nar/gki415","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gki415","pdf_url":"https://academic.oup.com/nar/article-pdf/33/suppl_2/W728/7622990/gki415.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being","score":0.47999998927116394}],"awards":[],"funders":[{"id":"https://openalex.org/F4320311904","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2064641442.pdf","grobid_xml":"https://content.openalex.org/works/W2064641442.grobid-xml"},"referenced_works_count":17,"referenced_works":["https://openalex.org/W2074044001","https://openalex.org/W2075371279","https://openalex.org/W2083587510","https://openalex.org/W2134606926","https://openalex.org/W2136211808","https://openalex.org/W2142503351","https://openalex.org/W2145240901","https://openalex.org/W2148047088","https://openalex.org/W2149057166","https://openalex.org/W2149615908","https://openalex.org/W2149652290","https://openalex.org/W2151371624","https://openalex.org/W2156434383","https://openalex.org/W2166642025","https://openalex.org/W2168973227","https://openalex.org/W2170770076","https://openalex.org/W4399232674"],"related_works":["https://openalex.org/W2771955576","https://openalex.org/W2566631254","https://openalex.org/W2023410356","https://openalex.org/W1984563346","https://openalex.org/W4210384666","https://openalex.org/W2002948709","https://openalex.org/W2110199419","https://openalex.org/W3184364899","https://openalex.org/W4309720653","https://openalex.org/W2080410528"],"abstract_inverted_index":{"The":[0],"unambiguous":[1],"characterization":[2,75,143],"of":[3,5,39,44,64,129,133,138,144,155,190,195],"strains":[4,27,81,106,151,154],"a":[6,61,120,127,136,173,183],"pathogen":[7],"is":[8,198],"crucial":[9],"for":[10,41,60,73,140,148,178],"addressing":[11],"questions":[12],"relating":[13,108,149],"to":[14,103,110,116,126,152],"its":[15],"epidemiology,":[16],"population":[17,118],"and":[18,47,52,55,66,107,115,146,172,185],"evolutionary":[19],"biology.":[20],"Multilocus":[21],"sequence":[22],"typing":[23,43],"(MLST),":[24],"which":[25,134],"defines":[26],"from":[28,97],"the":[29,37,89,99,117,124,141,156,187,191],"sequences":[30],"at":[31,200],"seven":[32,100],"house-keeping":[33],"loci,":[34],"has":[35],"become":[36],"method":[38,176],"choice":[40],"molecular":[42],"many":[45],"bacterial":[46],"fungal":[48],"pathogens":[49],"(and":[50],"non-pathogens),":[51],"MLST":[53,93,130,196],"schemes":[54],"strain":[56,74],"databases":[57],"are":[58,71,78],"available":[59,199],"growing":[62],"number":[63,128],"prokaryotic":[65],"eukaryotic":[67],"organisms.":[68],"Sequence":[69],"data":[70],"ideal":[72],"as":[76,119],"they":[77],"unambiguous,":[79],"meaning":[80],"can":[82,94],"readily":[83],"be":[84],"compared":[85],"between":[86],"laboratories":[87],"via":[88],"Internet.":[90],"Laboratories":[91],"undertaking":[92],"quickly":[95],"progress":[96],"sequencing":[98],"gene":[101],"fragments":[102],"characterizing":[104],"their":[105],"them":[109],"those":[111],"submitted":[112],"by":[113],"others":[114],"whole.":[121],"We":[122],"provide":[123],"gateway":[125],"schemes,":[131],"each":[132],"contain":[135],"set":[137],"tools":[139],"initial":[142],"strains,":[145],"methods":[147],"query":[150],"other":[153],"species,":[157],"including":[158],"clustering":[159],"based":[160,168],"on":[161,169],"differences":[162],"in":[163],"allelic":[164],"profiles,":[165],"phylogenetic":[166],"trees":[167],"concatenated":[170],"sequences,":[171],"recently":[174],"developed":[175],"(eBURST)":[177],"identifying":[179],"clonal":[180],"complexes":[181],"within":[182],"species":[184],"displaying":[186],"overall":[188],"structure":[189],"population.":[192],"This":[193],"network":[194],"websites":[197],"http://www.mlst.net.":[201]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":8},{"year":2023,"cited_by_count":12},{"year":2022,"cited_by_count":9},{"year":2021,"cited_by_count":8},{"year":2020,"cited_by_count":9},{"year":2019,"cited_by_count":12},{"year":2018,"cited_by_count":22},{"year":2017,"cited_by_count":9},{"year":2016,"cited_by_count":18},{"year":2015,"cited_by_count":15},{"year":2014,"cited_by_count":17},{"year":2013,"cited_by_count":23},{"year":2012,"cited_by_count":19}],"updated_date":"2026-06-05T09:01:59.212387","created_date":"2025-10-10T00:00:00"}