{"id":"https://openalex.org/W2057899240","doi":"https://doi.org/10.1093/nar/gki400","title":"BRIGEP--the BRIDGE-based genome-transcriptome-proteome browser","display_name":"BRIGEP--the BRIDGE-based genome-transcriptome-proteome browser","publication_year":2005,"publication_date":"2005-06-26","ids":{"openalex":"https://openalex.org/W2057899240","doi":"https://doi.org/10.1093/nar/gki400","mag":"2057899240","pmid":"https://pubmed.ncbi.nlm.nih.gov/15980569"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gki400","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gki400","pdf_url":"https://academic.oup.com/nar/article-pdf/33/suppl_2/W710/7622834/gki400.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/33/suppl_2/W710/7622834/gki400.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5088085534","display_name":"Alexander Goesmann","orcid":"https://orcid.org/0000-0002-7086-2568"},"institutions":[{"id":"https://openalex.org/I20121455","display_name":"Bielefeld University","ror":"https://ror.org/02hpadn98","country_code":"DE","type":"education","lineage":["https://openalex.org/I20121455"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"A. Goesmann","raw_affiliation_strings":["Bielefeld University, Center for Biotechnology (CeBiTec), D-33594 Bielefeld, Germany. Alexander.Goesmann@CeBiTec.Uni-Bielefeld.DE","Bielefeld University, Center for Biotechnology (CeBiTec)  D-33594 Bielefeld, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bielefeld University, Center for Biotechnology (CeBiTec), D-33594 Bielefeld, Germany. Alexander.Goesmann@CeBiTec.Uni-Bielefeld.DE","institution_ids":["https://openalex.org/I20121455"]},{"raw_affiliation_string":"Bielefeld University, Center for Biotechnology (CeBiTec)  D-33594 Bielefeld, Germany","institution_ids":["https://openalex.org/I20121455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010156128","display_name":"Burkhard Linke","orcid":null},"institutions":[{"id":"https://openalex.org/I20121455","display_name":"Bielefeld University","ror":"https://ror.org/02hpadn98","country_code":"DE","type":"education","lineage":["https://openalex.org/I20121455"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"B. Linke","raw_affiliation_strings":["Bielefeld University, Center for Biotechnology (CeBiTec) D-33594 Bielefeld, Germany","Bielefeld University, Center for Biotechnology (CeBiTec)  D-33594 Bielefeld, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bielefeld University, Center for Biotechnology (CeBiTec) D-33594 Bielefeld, Germany","institution_ids":["https://openalex.org/I20121455"]},{"raw_affiliation_string":"Bielefeld University, Center for Biotechnology (CeBiTec)  D-33594 Bielefeld, Germany","institution_ids":["https://openalex.org/I20121455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076164536","display_name":"Daniela Bartels","orcid":null},"institutions":[{"id":"https://openalex.org/I20121455","display_name":"Bielefeld University","ror":"https://ror.org/02hpadn98","country_code":"DE","type":"education","lineage":["https://openalex.org/I20121455"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"D. Bartels","raw_affiliation_strings":["Bielefeld University, Center for Biotechnology (CeBiTec) D-33594 Bielefeld, Germany","Bielefeld University, Center for Biotechnology (CeBiTec)  D-33594 Bielefeld, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bielefeld University, Center for Biotechnology (CeBiTec) D-33594 Bielefeld, Germany","institution_ids":["https://openalex.org/I20121455"]},{"raw_affiliation_string":"Bielefeld University, Center for Biotechnology (CeBiTec)  D-33594 Bielefeld, Germany","institution_ids":["https://openalex.org/I20121455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033922943","display_name":"Michael Dondrup","orcid":"https://orcid.org/0000-0002-2371-5928"},"institutions":[{"id":"https://openalex.org/I20121455","display_name":"Bielefeld University","ror":"https://ror.org/02hpadn98","country_code":"DE","type":"education","lineage":["https://openalex.org/I20121455"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"M. Dondrup","raw_affiliation_strings":["Bielefeld University, Center for Biotechnology (CeBiTec) D-33594 Bielefeld, Germany","Bielefeld University, Center for Biotechnology (CeBiTec)  D-33594 Bielefeld, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bielefeld University, Center for Biotechnology (CeBiTec) D-33594 Bielefeld, Germany","institution_ids":["https://openalex.org/I20121455"]},{"raw_affiliation_string":"Bielefeld University, Center for Biotechnology (CeBiTec)  D-33594 Bielefeld, Germany","institution_ids":["https://openalex.org/I20121455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029545881","display_name":"Lutz Krause","orcid":"https://orcid.org/0000-0003-3806-0845"},"institutions":[{"id":"https://openalex.org/I20121455","display_name":"Bielefeld University","ror":"https://ror.org/02hpadn98","country_code":"DE","type":"education","lineage":["https://openalex.org/I20121455"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"L. Krause","raw_affiliation_strings":["Bielefeld University, Center for Biotechnology (CeBiTec) D-33594 Bielefeld, Germany","Bielefeld University, Center for Biotechnology (CeBiTec)  D-33594 Bielefeld, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bielefeld University, Center for Biotechnology (CeBiTec) D-33594 Bielefeld, Germany","institution_ids":["https://openalex.org/I20121455"]},{"raw_affiliation_string":"Bielefeld University, Center for Biotechnology (CeBiTec)  D-33594 Bielefeld, Germany","institution_ids":["https://openalex.org/I20121455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055733947","display_name":"Heiko Neuweger","orcid":null},"institutions":[{"id":"https://openalex.org/I20121455","display_name":"Bielefeld University","ror":"https://ror.org/02hpadn98","country_code":"DE","type":"education","lineage":["https://openalex.org/I20121455"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"H. Neuweger","raw_affiliation_strings":["Bielefeld University, Center for Biotechnology (CeBiTec) D-33594 Bielefeld, Germany","Bielefeld University, Center for Biotechnology (CeBiTec)  D-33594 Bielefeld, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bielefeld University, Center for Biotechnology (CeBiTec) D-33594 Bielefeld, Germany","institution_ids":["https://openalex.org/I20121455"]},{"raw_affiliation_string":"Bielefeld University, Center for Biotechnology (CeBiTec)  D-33594 Bielefeld, Germany","institution_ids":["https://openalex.org/I20121455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034680715","display_name":"Sebastian Oehm","orcid":"https://orcid.org/0000-0002-7099-0578"},"institutions":[{"id":"https://openalex.org/I20121455","display_name":"Bielefeld University","ror":"https://ror.org/02hpadn98","country_code":"DE","type":"education","lineage":["https://openalex.org/I20121455"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"S. Oehm","raw_affiliation_strings":["Bielefeld University, Center for Biotechnology (CeBiTec) D-33594 Bielefeld, Germany","Bielefeld University, Center for Biotechnology (CeBiTec)  D-33594 Bielefeld, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bielefeld University, Center for Biotechnology (CeBiTec) D-33594 Bielefeld, Germany","institution_ids":["https://openalex.org/I20121455"]},{"raw_affiliation_string":"Bielefeld University, Center for Biotechnology (CeBiTec)  D-33594 Bielefeld, Germany","institution_ids":["https://openalex.org/I20121455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029013346","display_name":"Tobias Paczian","orcid":null},"institutions":[{"id":"https://openalex.org/I20121455","display_name":"Bielefeld University","ror":"https://ror.org/02hpadn98","country_code":"DE","type":"education","lineage":["https://openalex.org/I20121455"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"T. Paczian","raw_affiliation_strings":["Bielefeld University, Center for Biotechnology (CeBiTec) D-33594 Bielefeld, Germany","Bielefeld University, Center for Biotechnology (CeBiTec)  D-33594 Bielefeld, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bielefeld University, Center for Biotechnology (CeBiTec) D-33594 Bielefeld, Germany","institution_ids":["https://openalex.org/I20121455"]},{"raw_affiliation_string":"Bielefeld University, Center for Biotechnology (CeBiTec)  D-33594 Bielefeld, Germany","institution_ids":["https://openalex.org/I20121455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027887614","display_name":"Andreas Wilke","orcid":"https://orcid.org/0000-0002-7699-2267"},"institutions":[{"id":"https://openalex.org/I20121455","display_name":"Bielefeld University","ror":"https://ror.org/02hpadn98","country_code":"DE","type":"education","lineage":["https://openalex.org/I20121455"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"A. Wilke","raw_affiliation_strings":["Bielefeld University, Center for Biotechnology (CeBiTec) D-33594 Bielefeld, Germany","Bielefeld University, Center for Biotechnology (CeBiTec)  D-33594 Bielefeld, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bielefeld University, Center for Biotechnology (CeBiTec) D-33594 Bielefeld, Germany","institution_ids":["https://openalex.org/I20121455"]},{"raw_affiliation_string":"Bielefeld University, Center for Biotechnology (CeBiTec)  D-33594 Bielefeld, Germany","institution_ids":["https://openalex.org/I20121455"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5086419862","display_name":"Folker Meyer","orcid":"https://orcid.org/0000-0003-1112-2284"},"institutions":[{"id":"https://openalex.org/I20121455","display_name":"Bielefeld University","ror":"https://ror.org/02hpadn98","country_code":"DE","type":"education","lineage":["https://openalex.org/I20121455"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"F. Meyer","raw_affiliation_strings":["Bielefeld University, Center for Biotechnology (CeBiTec) D-33594 Bielefeld, Germany","Bielefeld University, Center for Biotechnology (CeBiTec)  D-33594 Bielefeld, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bielefeld University, Center for Biotechnology (CeBiTec) D-33594 Bielefeld, Germany","institution_ids":["https://openalex.org/I20121455"]},{"raw_affiliation_string":"Bielefeld University, Center for Biotechnology (CeBiTec)  D-33594 Bielefeld, Germany","institution_ids":["https://openalex.org/I20121455"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5088085534"],"corresponding_institution_ids":["https://openalex.org/I20121455"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":1.3814,"has_fulltext":true,"cited_by_count":24,"citation_normalized_percentile":{"value":0.79340971,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"33","issue":"Web Server","first_page":"W710","last_page":"W716"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9889000058174133,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9886000156402588,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/file-transfer-protocol","display_name":"File Transfer Protocol","score":0.820132315158844},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6711462736129761},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.6357206106185913},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5863178968429565},{"id":"https://openalex.org/keywords/proteome","display_name":"Proteome","score":0.552920937538147},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.42241203784942627},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4215448498725891},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.3881928324699402},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3515925407409668},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3229399621486664},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1611064076423645},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.14193546772003174},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.09529426693916321}],"concepts":[{"id":"https://openalex.org/C169485995","wikidata":"https://www.wikidata.org/wiki/Q42283","display_name":"File Transfer Protocol","level":3,"score":0.820132315158844},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6711462736129761},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.6357206106185913},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5863178968429565},{"id":"https://openalex.org/C104397665","wikidata":"https://www.wikidata.org/wiki/Q860947","display_name":"Proteome","level":2,"score":0.552920937538147},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.42241203784942627},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4215448498725891},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.3881928324699402},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3515925407409668},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3229399621486664},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1611064076423645},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.14193546772003174},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.09529426693916321}],"mesh":[{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012329","descriptor_name":"RNA, Bacterial","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D012329","descriptor_name":"RNA, Bacterial","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D012329","descriptor_name":"RNA, Bacterial","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D012329","descriptor_name":"RNA, Bacterial","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012329","descriptor_name":"RNA, Bacterial","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012329","descriptor_name":"RNA, Bacterial","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014158","descriptor_name":"Transcription, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014158","descriptor_name":"Transcription, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014158","descriptor_name":"Transcription, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016962","descriptor_name":"Sinorhizobium meliloti","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016962","descriptor_name":"Sinorhizobium meliloti","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016962","descriptor_name":"Sinorhizobium meliloti","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/nar/gki400","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gki400","pdf_url":"https://academic.oup.com/nar/article-pdf/33/suppl_2/W710/7622834/gki400.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:15980569","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/15980569","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:espace.library.uq.edu.au:UQ:372471","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306402388","display_name":"Queensland's institutional digital repository (The University of Queensland)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I165143802","host_organization_name":"The University of Queensland","host_organization_lineage":["https://openalex.org/I165143802"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"},{"id":"pmh:oai:europepmc.org:155187","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/1160161","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:pub.librecat.org:1773644","is_oa":true,"landing_page_url":"https://pub.uni-bielefeld.de/record/1773644","pdf_url":null,"source":{"id":"https://openalex.org/S4306401671","display_name":"PUB \u2013 Publications at Bielefeld University (Bielefeld University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I20121455","host_organization_name":"Bielefeld University","host_organization_lineage":["https://openalex.org/I20121455"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Goesmann A, Linke B, Bartels D, et al. BRIGEP - the BRIDGE-based genome-transcriptome-proteome browser. &lt;em&gt;Nucleic Acids Research&lt;/em&gt;. 2005;33(Web Server):W710-W716.","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/nar/gki400","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gki400","pdf_url":"https://academic.oup.com/nar/article-pdf/33/suppl_2/W710/7622834/gki400.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9","score":0.4699999988079071}],"awards":[],"funders":[{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"},{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"},{"id":"https://openalex.org/F4320323389","display_name":"Universit\u00e4t Bielefeld","ror":"https://ror.org/02hpadn98"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2057899240.pdf","grobid_xml":"https://content.openalex.org/works/W2057899240.grobid-xml"},"referenced_works_count":26,"referenced_works":["https://openalex.org/W1486283310","https://openalex.org/W1972101418","https://openalex.org/W1981593008","https://openalex.org/W1988175703","https://openalex.org/W1994994140","https://openalex.org/W1996423252","https://openalex.org/W1998401575","https://openalex.org/W2026465178","https://openalex.org/W2053150867","https://openalex.org/W2101269698","https://openalex.org/W2103017472","https://openalex.org/W2125347557","https://openalex.org/W2131089714","https://openalex.org/W2133253129","https://openalex.org/W2133645055","https://openalex.org/W2135557996","https://openalex.org/W2145385227","https://openalex.org/W2148474327","https://openalex.org/W2151831732","https://openalex.org/W2158714788","https://openalex.org/W2159482845","https://openalex.org/W2164926676","https://openalex.org/W2166699767","https://openalex.org/W2169929748","https://openalex.org/W2170488656","https://openalex.org/W4390804443"],"related_works":["https://openalex.org/W2349516242","https://openalex.org/W2378353542","https://openalex.org/W2358003099","https://openalex.org/W2373243130","https://openalex.org/W2479761186","https://openalex.org/W3088189910","https://openalex.org/W2389928460","https://openalex.org/W646151359","https://openalex.org/W625983845","https://openalex.org/W623643430"],"abstract_inverted_index":{"The":[0],"growing":[1],"amount":[2],"of":[3,10,21,40,47,62,83,96],"information":[4],"resulting":[5],"from":[6],"the":[7,19,34,58,81,92,97],"increasing":[8],"number":[9],"publicly":[11],"available":[12,121],"genomes":[13],"and":[14,27,37,53,60,66,69,104,114,128],"experimental":[15],"results":[16],"thereof":[17],"necessitates":[18],"development":[20],"comprehensive":[22],"systems":[23],"for":[24,99,126],"data":[25,68,113],"processing":[26,59],"analysis.":[28],"In":[29],"this":[30],"paper,":[31],"we":[32],"describe":[33],"current":[35],"state":[36],"latest":[38],"developments":[39],"our":[41,133,138],"BRIGEP":[42,88],"bioinformatics":[43],"software":[44],"system":[45],"consisting":[46],"three":[48,118],"web-based":[49],"applications:":[50],"GenDB,":[51],"EMMA":[52],"ProDB.":[54],"These":[55],"applications":[56],"facilitate":[57],"analysis":[61],"bacterial":[63],"genome,":[64],"transcriptome":[65],"proteome":[67],"are":[70,78,135],"actively":[71],"used":[72],"by":[73],"numerous":[74],"international":[75],"groups.":[76],"We":[77],"currently":[79],"in":[80,91,132],"process":[82],"extensively":[84],"interconnecting":[85],"these":[86,127],"applications.":[87],"was":[89],"developed":[90,131],"Bioinformatics":[93],"Resource":[94],"Facility":[95],"Center":[98],"Biotechnology":[100],"at":[101,122,141],"Bielefeld":[102],"University":[103],"is":[105,120],"freely":[106],"available.":[107],"A":[108],"demo":[109],"project":[110],"with":[111],"sample":[112],"access":[115],"to":[116],"all":[117],"tools":[119,130],"https://www.cebitec.uni-bielefeld.de/groups/brf/software/brigep/.":[123],"Code":[124],"bundles":[125],"other":[129],"group":[134],"accessible":[136],"on":[137],"FTP":[139],"server":[140],"ftp.cebitec.uni-bielefeld.de/pub/software/.":[142]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-06-16T07:32:37.131356","created_date":"2025-10-10T00:00:00"}
