{"id":"https://openalex.org/W2131465715","doi":"https://doi.org/10.1093/nar/gki397","title":"The Diamond STING server","display_name":"The Diamond STING server","publication_year":2005,"publication_date":"2005-06-26","ids":{"openalex":"https://openalex.org/W2131465715","doi":"https://doi.org/10.1093/nar/gki397","mag":"2131465715","pmid":"https://pubmed.ncbi.nlm.nih.gov/15980473"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gki397","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gki397","pdf_url":"https://academic.oup.com/nar/article-pdf/33/suppl_2/W29/7622802/gki397.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/33/suppl_2/W29/7622802/gki397.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5076918011","display_name":"Goran Neshich","orcid":"https://orcid.org/0000-0003-4982-0416"},"institutions":[{"id":"https://openalex.org/I199691007","display_name":"Brazilian Agricultural Research Corporation","ror":"https://ror.org/0482b5b22","country_code":"BR","type":"government","lineage":["https://openalex.org/I199691007"]}],"countries":["BR"],"is_corresponding":true,"raw_author_name":"G. Neshich","raw_affiliation_strings":["N\u00facleo de Bioinform\u00e1tica Estrutural, Embrapa/Inform\u00e1tica Agropecu\u00e1ria Campinas, Brazil. neshich@cnptia.embrapa.br","N\u00facleo de Bioinform\u00e1tica Estrutural, Embrapa/Inform\u00e1tica Agropecu\u00e1ria Campinas, Brazil"],"affiliations":[{"raw_affiliation_string":"N\u00facleo de Bioinform\u00e1tica Estrutural, Embrapa/Inform\u00e1tica Agropecu\u00e1ria Campinas, Brazil. neshich@cnptia.embrapa.br","institution_ids":["https://openalex.org/I199691007"]},{"raw_affiliation_string":"N\u00facleo de Bioinform\u00e1tica Estrutural, Embrapa/Inform\u00e1tica Agropecu\u00e1ria Campinas, Brazil","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068301369","display_name":"Luiz Borro","orcid":"https://orcid.org/0000-0002-8630-5950"},"institutions":[{"id":"https://openalex.org/I199691007","display_name":"Brazilian Agricultural Research Corporation","ror":"https://ror.org/0482b5b22","country_code":"BR","type":"government","lineage":["https://openalex.org/I199691007"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"L. C. Borro","raw_affiliation_strings":["Nu \u00b4cleo de Bioinforma \u00b4tica Estrutural, Embrapa/Informa \u00b4tica Agropecua \u00b4ria, Campinas, Brazil,"],"affiliations":[{"raw_affiliation_string":"Nu \u00b4cleo de Bioinforma \u00b4tica Estrutural, Embrapa/Informa \u00b4tica Agropecua \u00b4ria, Campinas, Brazil,","institution_ids":["https://openalex.org/I199691007"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113923068","display_name":"R. H. Higa","orcid":null},"institutions":[{"id":"https://openalex.org/I199691007","display_name":"Brazilian Agricultural Research Corporation","ror":"https://ror.org/0482b5b22","country_code":"BR","type":"government","lineage":["https://openalex.org/I199691007"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"R. H. Higa","raw_affiliation_strings":["Nu \u00b4cleo de Bioinforma \u00b4tica Estrutural, Embrapa/Informa \u00b4tica Agropecua \u00b4ria, Campinas, Brazil,"],"affiliations":[{"raw_affiliation_string":"Nu \u00b4cleo de Bioinforma \u00b4tica Estrutural, Embrapa/Informa \u00b4tica Agropecua \u00b4ria, Campinas, Brazil,","institution_ids":["https://openalex.org/I199691007"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058040518","display_name":"Paula R. Kuser","orcid":"https://orcid.org/0000-0002-0034-0932"},"institutions":[{"id":"https://openalex.org/I199691007","display_name":"Brazilian Agricultural Research Corporation","ror":"https://ror.org/0482b5b22","country_code":"BR","type":"government","lineage":["https://openalex.org/I199691007"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"P. R. Kuser","raw_affiliation_strings":["Nu \u00b4cleo de Bioinforma \u00b4tica Estrutural, Embrapa/Informa \u00b4tica Agropecua \u00b4ria, Campinas, Brazil,"],"affiliations":[{"raw_affiliation_string":"Nu \u00b4cleo de Bioinforma \u00b4tica Estrutural, Embrapa/Informa \u00b4tica Agropecua \u00b4ria, Campinas, Brazil,","institution_ids":["https://openalex.org/I199691007"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066373426","display_name":"M. E. B. Yamagishi","orcid":"https://orcid.org/0000-0001-7109-3038"},"institutions":[{"id":"https://openalex.org/I199691007","display_name":"Brazilian Agricultural Research Corporation","ror":"https://ror.org/0482b5b22","country_code":"BR","type":"government","lineage":["https://openalex.org/I199691007"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"M. E. B. Yamagishi","raw_affiliation_strings":["Nu \u00b4cleo de Bioinforma \u00b4tica Estrutural, Embrapa/Informa \u00b4tica Agropecua \u00b4ria, Campinas, Brazil,"],"affiliations":[{"raw_affiliation_string":"Nu \u00b4cleo de Bioinforma \u00b4tica Estrutural, Embrapa/Informa \u00b4tica Agropecua \u00b4ria, Campinas, Brazil,","institution_ids":["https://openalex.org/I199691007"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029645424","display_name":"Elisa Franco","orcid":"https://orcid.org/0000-0003-1103-2668"},"institutions":[{"id":"https://openalex.org/I199691007","display_name":"Brazilian Agricultural Research Corporation","ror":"https://ror.org/0482b5b22","country_code":"BR","type":"government","lineage":["https://openalex.org/I199691007"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"E. H. Franco","raw_affiliation_strings":["Nu \u00b4cleo de Bioinforma \u00b4tica Estrutural, Embrapa/Informa \u00b4tica Agropecua \u00b4ria, Campinas, Brazil,"],"affiliations":[{"raw_affiliation_string":"Nu \u00b4cleo de Bioinforma \u00b4tica Estrutural, Embrapa/Informa \u00b4tica Agropecua \u00b4ria, Campinas, Brazil,","institution_ids":["https://openalex.org/I199691007"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084772510","display_name":"J. N. Krauchenco","orcid":null},"institutions":[{"id":"https://openalex.org/I199691007","display_name":"Brazilian Agricultural Research Corporation","ror":"https://ror.org/0482b5b22","country_code":"BR","type":"government","lineage":["https://openalex.org/I199691007"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"J. N. Krauchenco","raw_affiliation_strings":["Nu \u00b4cleo de Bioinforma \u00b4tica Estrutural, Embrapa/Informa \u00b4tica Agropecua \u00b4ria, Campinas, Brazil,"],"affiliations":[{"raw_affiliation_string":"Nu \u00b4cleo de Bioinforma \u00b4tica Estrutural, Embrapa/Informa \u00b4tica Agropecua \u00b4ria, Campinas, Brazil,","institution_ids":["https://openalex.org/I199691007"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038836317","display_name":"R. Fileto","orcid":null},"institutions":[{"id":"https://openalex.org/I199691007","display_name":"Brazilian Agricultural Research Corporation","ror":"https://ror.org/0482b5b22","country_code":"BR","type":"government","lineage":["https://openalex.org/I199691007"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"R. Fileto","raw_affiliation_strings":["Nu \u00b4cleo de Bioinforma \u00b4tica Estrutural, Embrapa/Informa \u00b4tica Agropecua \u00b4ria, Campinas, Brazil,"],"affiliations":[{"raw_affiliation_string":"Nu \u00b4cleo de Bioinforma \u00b4tica Estrutural, Embrapa/Informa \u00b4tica Agropecua \u00b4ria, Campinas, Brazil,","institution_ids":["https://openalex.org/I199691007"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103515971","display_name":"Anthony A. Ribeiro","orcid":null},"institutions":[{"id":"https://openalex.org/I199691007","display_name":"Brazilian Agricultural Research Corporation","ror":"https://ror.org/0482b5b22","country_code":"BR","type":"government","lineage":["https://openalex.org/I199691007"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"A. A. Ribeiro","raw_affiliation_strings":["Nu \u00b4cleo de Bioinforma \u00b4tica Estrutural, Embrapa/Informa \u00b4tica Agropecua \u00b4ria, Campinas, Brazil,"],"affiliations":[{"raw_affiliation_string":"Nu \u00b4cleo de Bioinforma \u00b4tica Estrutural, Embrapa/Informa \u00b4tica Agropecua \u00b4ria, Campinas, Brazil,","institution_ids":["https://openalex.org/I199691007"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062754617","display_name":"Gislaine Barbosa Bezerra","orcid":"https://orcid.org/0000-0002-3814-6721"},"institutions":[{"id":"https://openalex.org/I199691007","display_name":"Brazilian Agricultural Research Corporation","ror":"https://ror.org/0482b5b22","country_code":"BR","type":"government","lineage":["https://openalex.org/I199691007"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"G. B. P. Bezerra","raw_affiliation_strings":["Nu \u00b4cleo de Bioinforma \u00b4tica Estrutural, Embrapa/Informa \u00b4tica Agropecua \u00b4ria, Campinas, Brazil,"],"affiliations":[{"raw_affiliation_string":"Nu \u00b4cleo de Bioinforma \u00b4tica Estrutural, Embrapa/Informa \u00b4tica Agropecua \u00b4ria, Campinas, Brazil,","institution_ids":["https://openalex.org/I199691007"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5097910508","display_name":"T. M. Velludo","orcid":null},"institutions":[{"id":"https://openalex.org/I199691007","display_name":"Brazilian Agricultural Research Corporation","ror":"https://ror.org/0482b5b22","country_code":"BR","type":"government","lineage":["https://openalex.org/I199691007"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"T. M. Velludo","raw_affiliation_strings":["Nu \u00b4cleo de Bioinforma \u00b4tica Estrutural, Embrapa/Informa \u00b4tica Agropecua \u00b4ria, Campinas, Brazil,"],"affiliations":[{"raw_affiliation_string":"Nu \u00b4cleo de Bioinforma \u00b4tica Estrutural, Embrapa/Informa \u00b4tica Agropecua \u00b4ria, Campinas, Brazil,","institution_ids":["https://openalex.org/I199691007"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111139210","display_name":"The Jimenez","orcid":null},"institutions":[{"id":"https://openalex.org/I199691007","display_name":"Brazilian Agricultural Research Corporation","ror":"https://ror.org/0482b5b22","country_code":"BR","type":"government","lineage":["https://openalex.org/I199691007"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"T. S. Jimenez","raw_affiliation_strings":["Nu \u00b4cleo de Bioinforma \u00b4tica Estrutural, Embrapa/Informa \u00b4tica Agropecua \u00b4ria, Campinas, Brazil,"],"affiliations":[{"raw_affiliation_string":"Nu \u00b4cleo de Bioinforma \u00b4tica Estrutural, Embrapa/Informa \u00b4tica Agropecua \u00b4ria, Campinas, Brazil,","institution_ids":["https://openalex.org/I199691007"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075553150","display_name":"Naohiro Furukawa","orcid":null},"institutions":[{"id":"https://openalex.org/I207014233","display_name":"Kyushu Institute of Technology","ror":"https://ror.org/02278tr80","country_code":"JP","type":"education","lineage":["https://openalex.org/I207014233"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"N. Furukawa","raw_affiliation_strings":["Department of Bioscience and Bioinformatics, Kyushu Institute of Technology (KIT), Iizuka, Japan"],"affiliations":[{"raw_affiliation_string":"Department of Bioscience and Bioinformatics, Kyushu Institute of Technology (KIT), Iizuka, Japan","institution_ids":["https://openalex.org/I207014233"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016696861","display_name":"H Teshima","orcid":null},"institutions":[{"id":"https://openalex.org/I207014233","display_name":"Kyushu Institute of Technology","ror":"https://ror.org/02278tr80","country_code":"JP","type":"education","lineage":["https://openalex.org/I207014233"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"H. Teshima","raw_affiliation_strings":["Department of Bioscience and Bioinformatics, Kyushu Institute of Technology (KIT), Iizuka, Japan"],"affiliations":[{"raw_affiliation_string":"Department of Bioscience and Bioinformatics, Kyushu Institute of Technology (KIT), Iizuka, Japan","institution_ids":["https://openalex.org/I207014233"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023575308","display_name":"K. Kitajima","orcid":null},"institutions":[{"id":"https://openalex.org/I207014233","display_name":"Kyushu Institute of Technology","ror":"https://ror.org/02278tr80","country_code":"JP","type":"education","lineage":["https://openalex.org/I207014233"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"K. Kitajima","raw_affiliation_strings":["Department of Bioscience and Bioinformatics, Kyushu Institute of Technology (KIT), Iizuka, Japan"],"affiliations":[{"raw_affiliation_string":"Department of Bioscience and Bioinformatics, Kyushu Institute of Technology (KIT), Iizuka, Japan","institution_ids":["https://openalex.org/I207014233"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033377518","display_name":"A. J. Bava","orcid":"https://orcid.org/0009-0008-4221-6391"},"institutions":[{"id":"https://openalex.org/I207014233","display_name":"Kyushu Institute of Technology","ror":"https://ror.org/02278tr80","country_code":"JP","type":"education","lineage":["https://openalex.org/I207014233"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"A. Bava","raw_affiliation_strings":["Department of Bioscience and Bioinformatics, Kyushu Institute of Technology (KIT), Iizuka, Japan"],"affiliations":[{"raw_affiliation_string":"Department of Bioscience and Bioinformatics, Kyushu Institute of Technology (KIT), Iizuka, Japan","institution_ids":["https://openalex.org/I207014233"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033360131","display_name":"Akinori Sarai","orcid":null},"institutions":[{"id":"https://openalex.org/I207014233","display_name":"Kyushu Institute of Technology","ror":"https://ror.org/02278tr80","country_code":"JP","type":"education","lineage":["https://openalex.org/I207014233"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"A. Sarai","raw_affiliation_strings":["Department of Bioscience and Bioinformatics, Kyushu Institute of Technology (KIT), Iizuka, Japan"],"affiliations":[{"raw_affiliation_string":"Department of Bioscience and Bioinformatics, Kyushu Institute of Technology (KIT), Iizuka, Japan","institution_ids":["https://openalex.org/I207014233"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087789032","display_name":"Roberto Coiti Togawa","orcid":"https://orcid.org/0000-0001-7179-3210"},"institutions":[{"id":"https://openalex.org/I199691007","display_name":"Brazilian Agricultural Research Corporation","ror":"https://ror.org/0482b5b22","country_code":"BR","type":"government","lineage":["https://openalex.org/I199691007"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"R. C. Togawa","raw_affiliation_strings":["Laborato rio de Bioinforma tica, Embrapa/Recursos Gene ticos e Biotecnologia, Brasilia, Brazil and","Laborato \u00b4rio de Bioinforma \u00b4tica, Embrapa/Recursos Gene \u00b4ticos e Biotecnologia, Brasilia, Brazil and"],"affiliations":[{"raw_affiliation_string":"Laborato rio de Bioinforma tica, Embrapa/Recursos Gene ticos e Biotecnologia, Brasilia, Brazil and","institution_ids":["https://openalex.org/I199691007"]},{"raw_affiliation_string":"Laborato \u00b4rio de Bioinforma \u00b4tica, Embrapa/Recursos Gene \u00b4ticos e Biotecnologia, Brasilia, Brazil and","institution_ids":["https://openalex.org/I199691007"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5038294401","display_name":"A. L. Mancini","orcid":null},"institutions":[{"id":"https://openalex.org/I199691007","display_name":"Brazilian Agricultural Research Corporation","ror":"https://ror.org/0482b5b22","country_code":"BR","type":"government","lineage":["https://openalex.org/I199691007"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"A. L. Mancini","raw_affiliation_strings":["Nu \u00b4cleo de Bioinforma \u00b4tica Estrutural, Embrapa/Informa \u00b4tica Agropecua \u00b4ria, Campinas, Brazil,"],"affiliations":[{"raw_affiliation_string":"Nu \u00b4cleo de Bioinforma \u00b4tica Estrutural, Embrapa/Informa \u00b4tica Agropecua \u00b4ria, Campinas, Brazil,","institution_ids":["https://openalex.org/I199691007"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":19,"corresponding_author_ids":["https://openalex.org/A5076918011"],"corresponding_institution_ids":["https://openalex.org/I199691007"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":3.2869,"has_fulltext":true,"cited_by_count":44,"citation_normalized_percentile":{"value":0.92130539,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"33","issue":"Web Server","first_page":"W29","last_page":"W35"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12047","display_name":"Viral Infections and Vectors","score":0.8628000020980835,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T12047","display_name":"Viral Infections and Vectors","score":0.8628000020980835,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11581","display_name":"Viral Infections and Outbreaks Research","score":0.8528000116348267,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T13650","display_name":"Computational Physics and Python Applications","score":0.7520999908447266,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.9288945198059082},{"id":"https://openalex.org/keywords/sting","display_name":"Sting","score":0.6624131202697754},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.37114089727401733},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.07580047845840454}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.9288945198059082},{"id":"https://openalex.org/C2779300339","wikidata":"https://www.wikidata.org/wiki/Q7617409","display_name":"Sting","level":2,"score":0.6624131202697754},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.37114089727401733},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.07580047845840454},{"id":"https://openalex.org/C146978453","wikidata":"https://www.wikidata.org/wiki/Q3798668","display_name":"Aerospace engineering","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000097024","descriptor_name":"Acylphosphatase","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000097024","descriptor_name":"Acylphosphatase","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000097024","descriptor_name":"Acylphosphatase","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000097024","descriptor_name":"Acylphosphatase","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000596","descriptor_name":"Amino Acids","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000596","descriptor_name":"Amino Acids","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000596","descriptor_name":"Amino Acids","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000596","descriptor_name":"Amino Acids","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017766","descriptor_name":"Acid Anhydride Hydrolases","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D017766","descriptor_name":"Acid Anhydride Hydrolases","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D017766","descriptor_name":"Acid Anhydride Hydrolases","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D017766","descriptor_name":"Acid Anhydride Hydrolases","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019427","descriptor_name":"HIV Integrase","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D019427","descriptor_name":"HIV Integrase","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D019427","descriptor_name":"HIV Integrase","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D019427","descriptor_name":"HIV Integrase","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":7,"locations":[{"id":"doi:10.1093/nar/gki397","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gki397","pdf_url":"https://academic.oup.com/nar/article-pdf/33/suppl_2/W29/7622802/gki397.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:15980473","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/15980473","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:americanae.aecid.es:2116691","is_oa":true,"landing_page_url":"http://www.alice.cnptia.embrapa.br/handle/doc/9085","pdf_url":null,"source":{"id":"https://openalex.org/S4306400786","display_name":"Americanae (AECID Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"reponame:Reposit\u00f3rio Institucional da EMBRAPA","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:europepmc.org:155184","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/1160158","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.102.6403","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.102.6403","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/cgi/reprint/33/suppl_2/W29.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.594.6015","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.594.6015","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/content/33/suppl_2/W29.full-text-lowres.pdf","raw_type":"text"},{"id":"pmh:oai:www.alice.cnptia.embrapa.br:doc/9085","is_oa":true,"landing_page_url":"http://www.alice.cnptia.embrapa.br/alice/handle/doc/9085","pdf_url":null,"source":{"id":"https://openalex.org/S4306402641","display_name":"LA Referencia (Red Federada de Repositorios Institucionales de Publicaciones Cient\u00edficas)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4383465926","host_organization_name":"LA Referencia","host_organization_lineage":["https://openalex.org/I4383465926"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"instacron:EMBRAPA","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/nar/gki397","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gki397","pdf_url":"https://academic.oup.com/nar/article-pdf/33/suppl_2/W29/7622802/gki397.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G120275728","display_name":null,"funder_award_id":"Univer","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"},{"id":"https://openalex.org/G2531298479","display_name":"Criacao de um centro para a pesquisa e oferta de servicos em bioinformatica (cb).","funder_award_id":"01/08895-0","funder_id":"https://openalex.org/F4320320997","funder_display_name":"Funda\u00e7\u00e3o de Amparo \u00e0 Pesquisa do Estado de S\u00e3o Paulo"},{"id":"https://openalex.org/G5079005330","display_name":null,"funder_award_id":"support","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"},{"id":"https://openalex.org/G6111631661","display_name":null,"funder_award_id":"Pesquisa","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"}],"funders":[{"id":"https://openalex.org/F4320320997","display_name":"Funda\u00e7\u00e3o de Amparo \u00e0 Pesquisa do Estado de S\u00e3o Paulo","ror":"https://ror.org/02ddkpn78"},{"id":"https://openalex.org/F4320322025","display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico","ror":"https://ror.org/03swz6y49"},{"id":"https://openalex.org/F4320322904","display_name":"Financiadora de Estudos e Projetos","ror":"https://ror.org/030w99567"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2131465715.pdf","grobid_xml":"https://content.openalex.org/works/W2131465715.grobid-xml"},"referenced_works_count":22,"referenced_works":["https://openalex.org/W159602724","https://openalex.org/W1536428180","https://openalex.org/W2008708467","https://openalex.org/W2028231353","https://openalex.org/W2089869950","https://openalex.org/W2099254366","https://openalex.org/W2104863267","https://openalex.org/W2113428012","https://openalex.org/W2133034723","https://openalex.org/W2133179696","https://openalex.org/W2133662205","https://openalex.org/W2139079647","https://openalex.org/W2152705200","https://openalex.org/W2157007944","https://openalex.org/W2158934671","https://openalex.org/W2166233246","https://openalex.org/W2166636467","https://openalex.org/W2916078022","https://openalex.org/W2916858871","https://openalex.org/W3140730010","https://openalex.org/W4213393525","https://openalex.org/W4239198058"],"related_works":["https://openalex.org/W4225487095","https://openalex.org/W2082860237","https://openalex.org/W2119695867","https://openalex.org/W3034580303","https://openalex.org/W2130076355","https://openalex.org/W1990804418","https://openalex.org/W1993764875","https://openalex.org/W345289938","https://openalex.org/W2046158694","https://openalex.org/W2788277189"],"abstract_inverted_index":{"Diamond":[0,133,183],"STING":[1,8,42,57,72,101,107,115,134,184],"is":[2,67,170,185],"a":[3,13,17,29,118,164,175],"new":[4,32,64,114],"version":[5,116],"of":[6,10,16,31,70,112,120,166,180],"the":[7,41,47,56,68,71,88,99,113,136,160,171],"suite":[9],"programs":[11],"for":[12,49,163],"comprehensive":[14],"analysis":[15],"relationship":[18],"between":[19],"protein":[20,79],"sequence,":[21],"structure,":[22],"function":[23],"and":[24,44,106,117,141,190],"stability.":[25],"We":[26,127],"have":[27,128],"added":[28],"number":[30],"functionalities":[33],"by":[34,45,98,149,151,158],"both":[35],"providing":[36],"more":[37,176],"structure":[38],"parameters":[39],"to":[40,74,87],"Database":[43],"improving/expanding":[46],"interface":[48],"enhanced":[50],"data":[51],"handling.":[52],"The":[53,109],"integration":[54],"among":[55],"components":[58],"has":[59],"also":[60],"been":[61],"improved.":[62],"A":[63],"key":[65],"feature":[66],"ability":[69],"server":[73],"handle":[75],"local":[76],"files":[77],"containing":[78],"structures":[80],"(either":[81],"modeled":[82],"or":[83],"not":[84],"yet":[85],"deposited":[86],"Protein":[89],"Data":[90],"Bank)":[91],"so":[92],"that":[93],"they":[94],"can":[95],"be":[96],"used":[97],"principal":[100],"components:":[102],"(Java)Protein":[103],"Dossier":[104],"((J)PD)":[105],"Report.":[108],"current":[110],"capabilities":[111],"couple":[119],"biologically":[121],"relevant":[122],"applications":[123],"are":[124],"described":[125],"here.":[126],"provided":[129],"an":[130],"example":[131],"where":[132],"identifies":[135],"active":[137],"site":[138],"amino":[139,144],"acids":[140,145],"folding":[142],"essential":[143],"(both":[146],"previously":[147],"determined":[148],"experiments)":[150],"filtering":[152],"out":[153],"all":[154],"but":[155],"those":[156],"residues":[157],"selecting":[159],"numerical":[161],"values/ranges":[162],"set":[165],"corresponding":[167],"parameters.":[168],"This":[169],"fundamental":[172],"step":[173],"toward":[174],"interesting":[177],"endeavor-the":[178],"prediction":[179],"such":[181],"residues.":[182],"freely":[186],"accessible":[187],"at":[188],"http://sms.cbi.cnptia.embrapa.br":[189],"http://trantor.bioc.columbia.edu/SMS.":[191]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":2},{"year":2014,"cited_by_count":4}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
