{"id":"https://openalex.org/W2096495474","doi":"https://doi.org/10.1093/nar/gki396","title":"SCRATCH: a protein structure and structural feature prediction server","display_name":"SCRATCH: a protein structure and structural feature prediction server","publication_year":2005,"publication_date":"2005-06-26","ids":{"openalex":"https://openalex.org/W2096495474","doi":"https://doi.org/10.1093/nar/gki396","mag":"2096495474","pmid":"https://pubmed.ncbi.nlm.nih.gov/15980571"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gki396","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gki396","pdf_url":"https://academic.oup.com/nar/article-pdf/33/suppl_2/W72/7622793/gki396.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/33/suppl_2/W72/7622793/gki396.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5044354277","display_name":"Jianlin Cheng","orcid":"https://orcid.org/0000-0003-0305-2853"},"institutions":[{"id":"https://openalex.org/I204250578","display_name":"University of California, Irvine","ror":"https://ror.org/04gyf1771","country_code":"US","type":"education","lineage":["https://openalex.org/I204250578"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"J. Cheng","raw_affiliation_strings":["Institute for Genomics and Bioinformatics, University of California Irvine, CA, USA","Institute for Genomics and Bioinformatics, University of California  Irvine, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Genomics and Bioinformatics, University of California Irvine, CA, USA","institution_ids":["https://openalex.org/I204250578"]},{"raw_affiliation_string":"Institute for Genomics and Bioinformatics, University of California  Irvine, CA, USA","institution_ids":["https://openalex.org/I204250578"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113274636","display_name":"Arlo Randall","orcid":null},"institutions":[{"id":"https://openalex.org/I204250578","display_name":"University of California, Irvine","ror":"https://ror.org/04gyf1771","country_code":"US","type":"education","lineage":["https://openalex.org/I204250578"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"A. Z. Randall","raw_affiliation_strings":["Institute for Genomics and Bioinformatics, University of California Irvine, CA, USA","Institute for Genomics and Bioinformatics, University of California  Irvine, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Genomics and Bioinformatics, University of California Irvine, CA, USA","institution_ids":["https://openalex.org/I204250578"]},{"raw_affiliation_string":"Institute for Genomics and Bioinformatics, University of California  Irvine, CA, USA","institution_ids":["https://openalex.org/I204250578"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007039952","display_name":"Michael J. Sweredoski","orcid":"https://orcid.org/0000-0003-0878-3831"},"institutions":[{"id":"https://openalex.org/I204250578","display_name":"University of California, Irvine","ror":"https://ror.org/04gyf1771","country_code":"US","type":"education","lineage":["https://openalex.org/I204250578"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"M. J. Sweredoski","raw_affiliation_strings":["Institute for Genomics and Bioinformatics, University of California Irvine, CA, USA","Institute for Genomics and Bioinformatics, University of California  Irvine, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Genomics and Bioinformatics, University of California Irvine, CA, USA","institution_ids":["https://openalex.org/I204250578"]},{"raw_affiliation_string":"Institute for Genomics and Bioinformatics, University of California  Irvine, CA, USA","institution_ids":["https://openalex.org/I204250578"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5088813478","display_name":"Pierre Baldi","orcid":"https://orcid.org/0000-0001-8752-4664"},"institutions":[{"id":"https://openalex.org/I204250578","display_name":"University of California, Irvine","ror":"https://ror.org/04gyf1771","country_code":"US","type":"education","lineage":["https://openalex.org/I204250578"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"P. Baldi","raw_affiliation_strings":["Institute for Genomics and Bioinformatics, University of California Irvine, CA, USA","Institute for Genomics and Bioinformatics, University of California  Irvine, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Genomics and Bioinformatics, University of California Irvine, CA, USA","institution_ids":["https://openalex.org/I204250578"]},{"raw_affiliation_string":"Institute for Genomics and Bioinformatics, University of California  Irvine, CA, USA","institution_ids":["https://openalex.org/I204250578"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5044354277"],"corresponding_institution_ids":["https://openalex.org/I204250578"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":11.377,"has_fulltext":true,"cited_by_count":1080,"citation_normalized_percentile":{"value":0.99161833,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"33","issue":"Web Server","first_page":"W72","last_page":"W76"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/scratch","display_name":"Scratch","score":0.7663754224777222},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7277404069900513},{"id":"https://openalex.org/keywords/protein-tertiary-structure","display_name":"Protein tertiary structure","score":0.6291404366493225},{"id":"https://openalex.org/keywords/server","display_name":"Server","score":0.61705482006073},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.5333345532417297},{"id":"https://openalex.org/keywords/suite","display_name":"Suite","score":0.5185835361480713},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5065287351608276},{"id":"https://openalex.org/keywords/protein-structure-prediction","display_name":"Protein structure prediction","score":0.4906803369522095},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.45039668679237366},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.44324785470962524},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.41191065311431885},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.40533724427223206},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.3881760537624359},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3662724494934082},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.24611923098564148},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.19048330187797546},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.17732983827590942}],"concepts":[{"id":"https://openalex.org/C2781235140","wikidata":"https://www.wikidata.org/wiki/Q275131","display_name":"Scratch","level":2,"score":0.7663754224777222},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7277404069900513},{"id":"https://openalex.org/C75599170","wikidata":"https://www.wikidata.org/wiki/Q898483","display_name":"Protein tertiary structure","level":2,"score":0.6291404366493225},{"id":"https://openalex.org/C93996380","wikidata":"https://www.wikidata.org/wiki/Q44127","display_name":"Server","level":2,"score":0.61705482006073},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.5333345532417297},{"id":"https://openalex.org/C79581498","wikidata":"https://www.wikidata.org/wiki/Q1367530","display_name":"Suite","level":2,"score":0.5185835361480713},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5065287351608276},{"id":"https://openalex.org/C18051474","wikidata":"https://www.wikidata.org/wiki/Q899656","display_name":"Protein structure prediction","level":3,"score":0.4906803369522095},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.45039668679237366},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.44324785470962524},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.41191065311431885},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.40533724427223206},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.3881760537624359},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3662724494934082},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.24611923098564148},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.19048330187797546},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.17732983827590942},{"id":"https://openalex.org/C95457728","wikidata":"https://www.wikidata.org/wiki/Q309","display_name":"History","level":0,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C166957645","wikidata":"https://www.wikidata.org/wiki/Q23498","display_name":"Archaeology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D004220","descriptor_name":"Disulfides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004220","descriptor_name":"Disulfides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004220","descriptor_name":"Disulfides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012997","descriptor_name":"Solvents","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012997","descriptor_name":"Solvents","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012997","descriptor_name":"Solvents","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1093/nar/gki396","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gki396","pdf_url":"https://academic.oup.com/nar/article-pdf/33/suppl_2/W72/7622793/gki396.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:15980571","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/15980571","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:authors.library.caltech.edu:103022","is_oa":false,"landing_page_url":"https://resolver.caltech.edu/CaltechAUTHORS:20200506-085432552","pdf_url":null,"source":{"id":"https://openalex.org/S4306402161","display_name":"CaltechAUTHORS (California Institute of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I122411786","host_organization_name":"California Institute of Technology","host_organization_lineage":["https://openalex.org/I122411786"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.103.8119","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.103.8119","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/cgi/screenpdf/33/suppl_2/W72.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.110.8937","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.110.8937","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.cs.ucf.edu/~jcheng/scratch.pdf","raw_type":"text"},{"id":"pmh:oai:escholarship.org/ark:/13030/qt7vd07274","is_oa":true,"landing_page_url":"https://escholarship.org/uc/item/7vd07274","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Research, vol 33, iss Web Server issue","raw_type":"article"},{"id":"pmh:oai:europepmc.org:1783463","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/1160157","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gki396","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gki396","pdf_url":"https://academic.oup.com/nar/article-pdf/33/suppl_2/W72/7622793/gki396.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G6622250571","display_name":null,"funder_award_id":"T15 LM007443","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"},{"id":"https://openalex.org/G7355214454","display_name":"Acquisition of Cluster and Server for Computational Biology at the University of California, Irvine","funder_award_id":"0321390","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G77261453","display_name":null,"funder_award_id":"LM-07443-01","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2096495474.pdf","grobid_xml":"https://content.openalex.org/works/W2096495474.grobid-xml"},"referenced_works_count":19,"referenced_works":["https://openalex.org/W1508596864","https://openalex.org/W2008708467","https://openalex.org/W2015403140","https://openalex.org/W2015470526","https://openalex.org/W2072649575","https://openalex.org/W2106116715","https://openalex.org/W2107538253","https://openalex.org/W2108305262","https://openalex.org/W2130479394","https://openalex.org/W2137259082","https://openalex.org/W2152064613","https://openalex.org/W2154106236","https://openalex.org/W2156798505","https://openalex.org/W2158714788","https://openalex.org/W2167197805","https://openalex.org/W2587025074","https://openalex.org/W3200464911","https://openalex.org/W4243691575","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W51493542","https://openalex.org/W1885320193","https://openalex.org/W4206825711","https://openalex.org/W2802527233","https://openalex.org/W2114568928","https://openalex.org/W1505512047","https://openalex.org/W240264496","https://openalex.org/W4236642748","https://openalex.org/W2327175913","https://openalex.org/W2751015859"],"abstract_inverted_index":{"SCRATCH":[0,13],"is":[1,68],"a":[2],"server":[3,67],"for":[4,18],"predicting":[5],"protein":[6],"tertiary":[7,40],"structure":[8],"and":[9,39,50],"structural":[10],"features.":[11],"The":[12,42,66],"software":[14],"suite":[15],"includes":[16],"predictors":[17],"secondary":[19],"structure,":[20],"relative":[21],"solvent":[22],"accessibility,":[23],"disordered":[24],"regions,":[25],"domains,":[26],"disulfide":[27],"bridges,":[28],"single":[29],"mutation":[30],"stability,":[31],"residue":[32,37],"contacts":[33,38],"versus":[34],"average,":[35],"individual":[36],"structure.":[41],"user":[43],"simply":[44],"provides":[45],"an":[46],"amino":[47],"acid":[48],"sequence":[49],"selects":[51],"the":[52,58,64],"desired":[53],"predictions,":[54],"then":[55],"submits":[56],"to":[57,63],"server.":[59],"Results":[60],"are":[61],"emailed":[62],"user.":[65],"available":[69],"at":[70],"http://www.igb.uci.edu/servers/psss.html.":[71]},"counts_by_year":[{"year":2026,"cited_by_count":23},{"year":2025,"cited_by_count":55},{"year":2024,"cited_by_count":61},{"year":2023,"cited_by_count":52},{"year":2022,"cited_by_count":77},{"year":2021,"cited_by_count":84},{"year":2020,"cited_by_count":78},{"year":2019,"cited_by_count":63},{"year":2018,"cited_by_count":32},{"year":2017,"cited_by_count":45},{"year":2016,"cited_by_count":42},{"year":2015,"cited_by_count":42},{"year":2014,"cited_by_count":60},{"year":2013,"cited_by_count":51},{"year":2012,"cited_by_count":47}],"updated_date":"2026-06-26T08:34:08.712188","created_date":"2025-10-10T00:00:00"}
