{"id":"https://openalex.org/W2020085652","doi":"https://doi.org/10.1093/nar/gki389","title":"ProTarget: automatic prediction of protein structure novelty","display_name":"ProTarget: automatic prediction of protein structure novelty","publication_year":2005,"publication_date":"2005-06-26","ids":{"openalex":"https://openalex.org/W2020085652","doi":"https://doi.org/10.1093/nar/gki389","mag":"2020085652","pmid":"https://pubmed.ncbi.nlm.nih.gov/15980586"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gki389","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gki389","pdf_url":"https://academic.oup.com/nar/article-pdf/33/suppl_2/W81/7622732/gki389.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/33/suppl_2/W81/7622732/gki389.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5043491853","display_name":"Ori Sasson","orcid":null},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"O. Sasson","raw_affiliation_strings":["School of Computer Science and Engineering, Institute of Life Sciences, Hebrew University of Jerusalem, 91904 Israel"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Institute of Life Sciences, Hebrew University of Jerusalem, 91904 Israel","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5085924022","display_name":"Michal Linial","orcid":"https://orcid.org/0000-0002-9357-4526"},"institutions":[{"id":"https://openalex.org/I197251160","display_name":"Hebrew University of Jerusalem","ror":"https://ror.org/03qxff017","country_code":"IL","type":"education","lineage":["https://openalex.org/I197251160"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"M. Linial","raw_affiliation_strings":["Department of Biological Chemistry,","Institute of Life Sciences, Hebrew University of Jerusalem, 91904 Israel"],"affiliations":[{"raw_affiliation_string":"Department of Biological Chemistry,","institution_ids":[]},{"raw_affiliation_string":"Institute of Life Sciences, Hebrew University of Jerusalem, 91904 Israel","institution_ids":["https://openalex.org/I197251160"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5043491853"],"corresponding_institution_ids":[],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":0.3797,"has_fulltext":true,"cited_by_count":12,"citation_normalized_percentile":{"value":0.59190426,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"33","issue":"Web Server","first_page":"W81","last_page":"W84"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/structural-classification-of-proteins-database","display_name":"Structural Classification of Proteins database","score":0.7905352115631104},{"id":"https://openalex.org/keywords/protein-data-bank","display_name":"Protein Data Bank (RCSB PDB)","score":0.7216445803642273},{"id":"https://openalex.org/keywords/structural-genomics","display_name":"Structural genomics","score":0.7143605351448059},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7119531631469727},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.6429547667503357},{"id":"https://openalex.org/keywords/protein-data-bank","display_name":"Protein Data Bank","score":0.6283339262008667},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.5788502097129822},{"id":"https://openalex.org/keywords/protein-sequencing","display_name":"Protein sequencing","score":0.5496044754981995},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.5381117463111877},{"id":"https://openalex.org/keywords/protein-structure-prediction","display_name":"Protein structure prediction","score":0.5244743824005127},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.48752066493034363},{"id":"https://openalex.org/keywords/protein-structure-database","display_name":"Protein structure database","score":0.47976717352867126},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.47261691093444824},{"id":"https://openalex.org/keywords/protein-methods","display_name":"Protein methods","score":0.4647708535194397},{"id":"https://openalex.org/keywords/novelty","display_name":"Novelty","score":0.4610736668109894},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.42031145095825195},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.4194006323814392},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.4009275734424591},{"id":"https://openalex.org/keywords/sequence-analysis","display_name":"Sequence analysis","score":0.3791644275188446},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.36675918102264404},{"id":"https://openalex.org/keywords/sequence-database","display_name":"Sequence database","score":0.3250628113746643},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.30365681648254395},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.2891952395439148},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2840794324874878},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.23859870433807373},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.11206990480422974}],"concepts":[{"id":"https://openalex.org/C58773245","wikidata":"https://www.wikidata.org/wiki/Q4832556","display_name":"Structural Classification of Proteins database","level":3,"score":0.7905352115631104},{"id":"https://openalex.org/C65556437","wikidata":"https://www.wikidata.org/wiki/Q766195","display_name":"Protein Data Bank (RCSB PDB)","level":2,"score":0.7216445803642273},{"id":"https://openalex.org/C192772702","wikidata":"https://www.wikidata.org/wiki/Q2583975","display_name":"Structural genomics","level":3,"score":0.7143605351448059},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7119531631469727},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.6429547667503357},{"id":"https://openalex.org/C119145174","wikidata":"https://www.wikidata.org/wiki/Q7251429","display_name":"Protein Data Bank","level":3,"score":0.6283339262008667},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.5788502097129822},{"id":"https://openalex.org/C10010492","wikidata":"https://www.wikidata.org/wiki/Q3142557","display_name":"Protein sequencing","level":4,"score":0.5496044754981995},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.5381117463111877},{"id":"https://openalex.org/C18051474","wikidata":"https://www.wikidata.org/wiki/Q899656","display_name":"Protein structure prediction","level":3,"score":0.5244743824005127},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.48752066493034363},{"id":"https://openalex.org/C136475424","wikidata":"https://www.wikidata.org/wiki/Q7251500","display_name":"Protein structure database","level":4,"score":0.47976717352867126},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.47261691093444824},{"id":"https://openalex.org/C111364199","wikidata":"https://www.wikidata.org/wiki/Q2915896","display_name":"Protein methods","level":4,"score":0.4647708535194397},{"id":"https://openalex.org/C2778738651","wikidata":"https://www.wikidata.org/wiki/Q16546687","display_name":"Novelty","level":2,"score":0.4610736668109894},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.42031145095825195},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.4194006323814392},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.4009275734424591},{"id":"https://openalex.org/C61053724","wikidata":"https://www.wikidata.org/wiki/Q1154615","display_name":"Sequence analysis","level":3,"score":0.3791644275188446},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.36675918102264404},{"id":"https://openalex.org/C41584329","wikidata":"https://www.wikidata.org/wiki/Q175902","display_name":"Sequence database","level":3,"score":0.3250628113746643},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.30365681648254395},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.2891952395439148},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2840794324874878},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.23859870433807373},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.11206990480422974},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C27206212","wikidata":"https://www.wikidata.org/wiki/Q34178","display_name":"Theology","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017510","descriptor_name":"Protein Folding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017510","descriptor_name":"Protein Folding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017510","descriptor_name":"Protein Folding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1093/nar/gki389","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gki389","pdf_url":"https://academic.oup.com/nar/article-pdf/33/suppl_2/W81/7622732/gki389.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:15980586","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/15980586","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:ink.library.smu.edu.sg:sis_research-1089","is_oa":true,"landing_page_url":"https://ink.library.smu.edu.sg/sis_research/90","pdf_url":null,"source":{"id":"https://openalex.org/S4377196871","display_name":"Institutional Knowledge (InK) - Institutional Knowledge at Singapore Management University (Singapore Management University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I79891267","host_organization_name":"Singapore Management University","host_organization_lineage":["https://openalex.org/I79891267"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://dx.doi.org/10.1093/nar/gki389","raw_type":"Journal Article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.128.7176","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.128.7176","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.ls.huji.ac.il/~michall/papers/Protarget-Linial.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.594.8745","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.594.8745","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/content/33/suppl_2/W81.full-text-lowres.pdf","raw_type":"text"},{"id":"pmh:oai:pubmedcentral.nih.gov:1160150","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/1160150","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gki389","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gki389","pdf_url":"https://academic.oup.com/nar/article-pdf/33/suppl_2/W81/7622732/gki389.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.47999998927116394,"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17"}],"awards":[{"id":"https://openalex.org/G1836573911","display_name":"ITR: Discovering Regulatory Elements in Biological Sequences","funder_award_id":"0218798","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G848032724","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320321950","display_name":"Hebrew University of Jerusalem","ror":"https://ror.org/03qxff017"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2020085652.pdf","grobid_xml":"https://content.openalex.org/works/W2020085652.grobid-xml"},"referenced_works_count":11,"referenced_works":["https://openalex.org/W1521398555","https://openalex.org/W1582255757","https://openalex.org/W1992305340","https://openalex.org/W2004231585","https://openalex.org/W2020481171","https://openalex.org/W2096039184","https://openalex.org/W2107302432","https://openalex.org/W2109199414","https://openalex.org/W2155480785","https://openalex.org/W2158714788","https://openalex.org/W2165206687"],"related_works":["https://openalex.org/W2113091268","https://openalex.org/W2166372707","https://openalex.org/W1979707045","https://openalex.org/W4235583582","https://openalex.org/W4285340733","https://openalex.org/W1997379747","https://openalex.org/W3132544722","https://openalex.org/W2926533301","https://openalex.org/W1973462822","https://openalex.org/W2584773272"],"abstract_inverted_index":{"ProTarget":[0,43,121,144,162],"is":[1,78,101,122,145,163],"a":[2,18,82,95,123,136,140],"Web-based":[3],"tool":[4],"for":[5,20,34],"the":[6,14,85,90,104,107,110,127,133,157],"automatic":[7],"prediction":[8],"of":[9,28,52,75,84,92,120,126,129],"fold":[10],"novelty.":[11],"It":[12],"offers":[13],"structural":[15,97,142],"genomics":[16],"community":[17],"method":[19],"target":[21],"selection":[22],"by":[23],"providing":[24],"an":[25,47,60],"online":[26],"analysis":[27],"any":[29,38],"new":[30,96],"or":[31,71],"pre-existing":[32],"sequence":[33,54,66,138],"its":[35,93],"relationship":[36],"to":[37,59,88],"previously":[39],"solved":[40],"three-dimensional":[41],"structure.":[42],"takes":[44],"as":[45],"input":[46],"amino":[48],"acid":[49],"sequence.":[50],"Regions":[51],"this":[53],"that":[55,114,135],"exhibit":[56],"high":[57],"similarity":[58],"existing":[61],"PDB":[62,160],"(Protein":[63],"Data":[64],"Bank)":[65],"are":[67],"removed,":[68],"leaving":[69],"one":[70],"more":[72],"subsequences.":[73],"Each":[74],"these":[76],"subsequences":[77],"then":[79],"analyzed":[80],"against":[81],"clustering":[83,108],"protein":[86,128,137,154],"space":[87],"determine":[89],"likelihood":[91,100,134],"representing":[94],"superfamily.":[98,143],"This":[99],"derived":[102],"from":[103,156],"distance":[105],"in":[106],"between":[109],"(sub)sequence":[111],"and":[112,148,159],"sequences":[113,155],"have":[115],"known":[116],"structures.":[117],"The":[118],"output":[119],"graphical":[124],"visualization":[125],"interest":[130],"together":[131],"with":[132],"represents":[139],"novel":[141],"updated":[146],"regularly":[147],"currently":[149],"covers":[150],"over":[151],"160":[152],"000":[153],"SwissProt":[158],"databases.":[161],"available":[164],"at":[165],"http://www.protarget.cs.huji.ac.il.":[166]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":3},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":1}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}