{"id":"https://openalex.org/W2048249183","doi":"https://doi.org/10.1093/nar/gki130","title":"MDS_IES_DB: a database of macronuclear and micronuclear genes in spirotrichous ciliates","display_name":"MDS_IES_DB: a database of macronuclear and micronuclear genes in spirotrichous ciliates","publication_year":2004,"publication_date":"2004-12-17","ids":{"openalex":"https://openalex.org/W2048249183","doi":"https://doi.org/10.1093/nar/gki130","mag":"2048249183","pmid":"https://pubmed.ncbi.nlm.nih.gov/15608224"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gki130","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gki130","pdf_url":"https://academic.oup.com/nar/article-pdf/33/suppl_1/D396/7622492/gki130.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/nar/article-pdf/33/suppl_1/D396/7622492/gki130.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5075135655","display_name":"Andr\u00e9 R.O. Cavalcanti","orcid":"https://orcid.org/0000-0001-8708-6932"},"institutions":[{"id":"https://openalex.org/I20089843","display_name":"Princeton University","ror":"https://ror.org/00hx57361","country_code":"US","type":"education","lineage":["https://openalex.org/I20089843"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"A. R. O. Cavalcanti","raw_affiliation_strings":["Department of Ecology and Evolutionary Biology, Princeton University, NJ 08544, USA","Department of Ecology and Evolutionary Biology, Princeton University, NJ 08544 USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Ecology and Evolutionary Biology, Princeton University, NJ 08544, USA","institution_ids":["https://openalex.org/I20089843"]},{"raw_affiliation_string":"Department of Ecology and Evolutionary Biology, Princeton University, NJ 08544 USA","institution_ids":["https://openalex.org/I20089843"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5075135655"],"corresponding_institution_ids":["https://openalex.org/I20089843"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":1.447,"has_fulltext":true,"cited_by_count":35,"citation_normalized_percentile":{"value":0.79883796,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"33","issue":"Database issue","first_page":"D396","last_page":"D398"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11879","display_name":"Protist diversity and phylogeny","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11879","display_name":"Protist diversity and phylogeny","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9825000166893005,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.9272801876068115},{"id":"https://openalex.org/keywords/ciliate","display_name":"Ciliate","score":0.8009478449821472},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.6590816378593445},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.5371644496917725},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.5282531976699829},{"id":"https://openalex.org/keywords/macronucleus","display_name":"Macronucleus","score":0.49358928203582764}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.9272801876068115},{"id":"https://openalex.org/C2777334866","wikidata":"https://www.wikidata.org/wiki/Q106345","display_name":"Ciliate","level":2,"score":0.8009478449821472},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.6590816378593445},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5371644496917725},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.5282531976699829},{"id":"https://openalex.org/C56683836","wikidata":"https://www.wikidata.org/wiki/Q1886511","display_name":"Macronucleus","level":3,"score":0.49358928203582764},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016798","descriptor_name":"Ciliophora","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016798","descriptor_name":"Ciliophora","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016798","descriptor_name":"Ciliophora","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017125","descriptor_name":"Genes, Protozoan","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017125","descriptor_name":"Genes, Protozoan","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017125","descriptor_name":"Genes, Protozoan","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D048631","descriptor_name":"Micronucleus, Germline","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D048631","descriptor_name":"Micronucleus, Germline","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D048631","descriptor_name":"Micronucleus, Germline","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D048648","descriptor_name":"Macronucleus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D048648","descriptor_name":"Macronucleus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D048648","descriptor_name":"Macronucleus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gki130","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gki130","pdf_url":"https://academic.oup.com/nar/article-pdf/33/suppl_1/D396/7622492/gki130.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:15608224","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/15608224","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:540084","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/540084","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gki130","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gki130","pdf_url":"https://academic.oup.com/nar/article-pdf/33/suppl_1/D396/7622492/gki130.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Life in Land","score":0.4000000059604645,"id":"https://metadata.un.org/sdg/15"}],"awards":[{"id":"https://openalex.org/G232496113","display_name":null,"funder_award_id":"GM59708","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G264559447","display_name":"ITR/SY Molecular Computation in Ciliates","funder_award_id":"0121422","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6719086280","display_name":null,"funder_award_id":"R01 GM059708","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2048249183.pdf","grobid_xml":"https://content.openalex.org/works/W2048249183.grobid-xml"},"referenced_works_count":15,"referenced_works":["https://openalex.org/W1502570864","https://openalex.org/W1912524364","https://openalex.org/W1988043538","https://openalex.org/W2004600852","https://openalex.org/W2009081534","https://openalex.org/W2010256574","https://openalex.org/W2017521503","https://openalex.org/W2048483518","https://openalex.org/W2053333642","https://openalex.org/W2072316964","https://openalex.org/W2087442891","https://openalex.org/W2088089212","https://openalex.org/W2096893503","https://openalex.org/W2143681706","https://openalex.org/W4248801972"],"related_works":["https://openalex.org/W2043885475","https://openalex.org/W306473793","https://openalex.org/W2524748896","https://openalex.org/W2487621842","https://openalex.org/W390894984","https://openalex.org/W2025442761","https://openalex.org/W243882456","https://openalex.org/W652936862","https://openalex.org/W2100977512","https://openalex.org/W1035889064"],"abstract_inverted_index":{"Ciliated":[0],"protozoa":[1],"have":[2],"two":[3],"kinds":[4],"of":[5,24,31,42],"nuclei:":[6],"Macronuclei":[7],"(MAC)":[8],"and":[9,44,61,69],"Micronuclei":[10],"(MIC).":[11],"In":[12],"some":[13],"ciliate":[14],"classes,":[15],"such":[16,32],"as":[17],"spirotrichs,":[18],"most":[19],"genes":[20,56],"undergo":[21],"several":[22],"layers":[23],"DNA":[25],"rearrangement":[26],"during":[27],"macronuclear":[28],"development.":[29],"Because":[30],"processes,":[33],"these":[34],"organisms":[35],"provide":[36],"ideal":[37],"systems":[38],"for":[39,57],"studying":[40],"mechanisms":[41],"recombination":[43],"gene":[45],"rearrangement.":[46],"Here,":[47],"we":[48],"describe":[49],"a":[50],"database":[51,81],"that":[52],"contains":[53],"all":[54,73],"spirotrich":[55],"which":[58],"both":[59],"MAC":[60],"MIC":[62],"versions":[63],"are":[64],"sequenced,":[65],"with":[66],"consistent":[67],"annotation":[68],"easy":[70],"access":[71],"to":[72,78],"the":[74,80],"features.":[75],"An":[76],"interface":[77],"query":[79],"is":[82],"available":[83],"at":[84],"http://oxytricha.princeton.edu/dimorphism/database.htm.":[85]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":2},{"year":2012,"cited_by_count":2}],"updated_date":"2026-06-24T13:16:06.693445","created_date":"2025-10-10T00:00:00"}
